KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:44 2014 Check: 00 .. Name: ENSP00000360268/1-795 Len: 1304 Check: 3182 Weight: 1.00 Name: ENSTTRP00000003055/1-795 Len: 1304 Check: 4571 Weight: 1.00 Name: ENSBTAP00000015703/1-795 Len: 1304 Check: 5902 Weight: 1.00 Name: bmy_19754T0/1-654 Len: 1304 Check: 5433 Weight: 1.00 Name: BACU012452/1-1242 Len: 1304 Check: 5761 Weight: 1.00 // 1 50 ENSP00000360268/1-795 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003055/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015703/1-795 ---------- ---------- ---------- ---------- ---------- bmy_19754T0/1-654 ---------- ---------- ---------- ---------- ---------- BACU012452/1-1242 MFTSQLALLQ VFFLMVPEGV RPQPSPSPSG AVSTQSDLGP RTQGETLQSS 51 100 ENSP00000360268/1-795 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003055/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015703/1-795 ---------- ---------- ---------- ---------- ---------- bmy_19754T0/1-654 ---------- ---------- ---------- ---------- ---------- BACU012452/1-1242 SEVPGVSTVG PTVVTPSAPG NRTVDLFPVL PICVCDLTPG ACDMNCCCDR 101 150 ENSP00000360268/1-795 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003055/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015703/1-795 ---------- ---------- ---------- ---------- ---------- bmy_19754T0/1-654 ---------- ---------- ---------- ---------- ---------- BACU012452/1-1242 DCYLLHPRTV FSFCLPGSVR SSSWVCVDNS LIFRSNSPFP SRVFMDSNGI 151 200 ENSP00000360268/1-795 ---------- ---------- ---------- ---------- -----MLSQV ENSTTRP00000003055/1-795 ---------- ---------- ---------- ---------- -----MLSRV ENSBTAP00000015703/1-795 ---------- ---------- ---------- ---------- -----MLSQV bmy_19754T0/1-654 ---------- ---------- ---------- ---------- ---------- BACU012452/1-1242 KQFCVHVNNS KLNYFQKLQK VNATSFQALA TEFGGESFTS TFQTQSPPPF 201 250 ENSP00000360268/1-795 YRCGFQ---- ---------- ---------- ---------- ---------- ENSTTRP00000003055/1-795 CRSGSP---- ---------- ---------- ---------- ---------- ENSBTAP00000015703/1-795 CRSGSQ---- ---------- ---------- ---------- ---------- bmy_19754T0/1-654 ---------- ---------- ---------- ---------- ---------- BACU012452/1-1242 YRAGDPILTY FPKWSVIGLL RQPAGVGAGG LCAENNPAGF LESKSTTCAR 251 300 ENSP00000360268/1-795 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003055/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015703/1-795 ---------- ---------- ---------- ---------- ---------- bmy_19754T0/1-654 ---------- ---------- ---------- ---------- ---------- BACU012452/1-1242 FFKNLADSCT LDPTLNAASY HNFTVLKVIY EIETNGTFGI QKVSISFGQT 301 350 ENSP00000360268/1-795 --------PF NQHLL----- ---------- ---------- ---------- ENSTTRP00000003055/1-795 --------SF THRLL----- ---------- ---------- ---------- ENSBTAP00000015703/1-795 --------SF TQRLL----- ---------- ---------- ---------- bmy_19754T0/1-654 ---------- ---------- ---------- ---------- ---------- BACU012452/1-1242 NLTVEPGTSF QQHFILHFRA FQQSTAASLT GFRSGNPGYI AEKPLLALTG 351 400 ENSP00000360268/1-795 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003055/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015703/1-795 ---------- ---------- ---------- ---------- ---------- bmy_19754T0/1-654 ---------- ---------- ---------- ---------- ---------- BACU012452/1-1242 DRRHSMTLLQ SKGDGTCSIK RHEVQFGVNA ISGCKLSRRP GLSGLGSPRG 401 450 ENSP00000360268/1-795 ---------- ---------- ---------- -PWVKCTTVF ---------- ENSTTRP00000003055/1-795 ---------- ---------- ---------- -PWVQSTTLS ---------- ENSBTAP00000015703/1-795 ---------- ---------- ---------- -PWVQPTILS ---------- bmy_19754T0/1-654 ---------- ---------- ---------- ---------- ---------- BACU012452/1-1242 ARARFSEGAY AIAAAQLRAG PLRRVNSGGR EAWVYSNAAD VTSSLRDVDG 451 500 ENSP00000360268/1-795 -RSH-CIQPS VIRHVRSWSN IPFITVPLSR THGKSFAHRS ELKHAKRIVV ENSTTRP00000003055/1-795 -RS-CCVQPS AIRHVRSWSN IPFITVPLSR AHGKSFAHRS ELKHAKRIVV ENSBTAP00000015703/1-795 -RSR-RVQPS AIRHVRSWSN IPFITVPLSR THGKSFAHRS ELKHAKRIVV bmy_19754T0/1-654 ---------- ---------- ---------- MHGKSFAHRS ELKHAKRIVV BACU012452/1-1242 RKGECRVQPS AIRHVRSWSN IPFITVPLSR MHGKSFAHRS ELKHAKRIVV 501 550 ENSP00000360268/1-795 KLGSAVVTRG DECGLALGRL ASIVEQVSVL QNQGREMMLV TSGAVAFGKQ ENSTTRP00000003055/1-795 KLGSAVVTRG DECGLALGRL ASIVEQVSVL QNQGREMMLV TSGAVAFGKQ ENSBTAP00000015703/1-795 KLGSAVVTRG DECGLALGRL ASIVEQVSVL QNQGREMMLV TSGAVAFGKQ bmy_19754T0/1-654 KLGSAVVTRG DECGLALGRL ASIVEQVSVL QNQGREMMLV TSGAVAFGKQ BACU012452/1-1242 KLGSAVVTRG DECGLALGRL ASIVEQVSVL QNQGREMMLV TSGAVAFGKQ 551 600 ENSP00000360268/1-795 RLRHEILLSQ SVRQALHSGQ NQLKEMAIPV LEARACAAAG QSGLMALYEA ENSTTRP00000003055/1-795 RLRHEILLSQ SVRQALHSGQ NQLKEMAIPV LEARACAAAG QSGLMALYEA ENSBTAP00000015703/1-795 RLRHEILLSQ SVRQALHSGQ NHLKEMAIPV LEARACAAAG QSGLMALYEA bmy_19754T0/1-654 RLRHEILLSQ SVRQALHSGQ NQLKEM---- ---------- ---------- BACU012452/1-1242 RLRHEILLSQ SVRQALHSGQ NQLKEMAIPV LEARACAAAG QSGLMALYEA 601 650 ENSP00000360268/1-795 MFTQYSICAA QILVTNLDFH DEQKRRNLNG TLHELLRMNI VPIVNTNDAV ENSTTRP00000003055/1-795 MFTQYSICAA QILVTNLDFH DEQKRRNLNG TLHELLRMNI VPIVNTNDAV ENSBTAP00000015703/1-795 MFTQYSICAA QILVTNLDFH DEQKRRNLNG TLHELLRMNI VPIVNTNDAV bmy_19754T0/1-654 ---------- ---------- ---------- ---------- ---------- BACU012452/1-1242 MFTQYSICAA ---------- --QKRRNLNG TLHELLRMNI VPIVNTNDAV 651 700 ENSP00000360268/1-795 VPPAEPNSDL QGVNVISVKD NDSLAARLAV EMKTDLLIVL SDVEGLFDSP ENSTTRP00000003055/1-795 VPPAEPNSDL QGVNVISVKD NDSLAARLAV EMKTDLLIVL SDVEGLFDNP ENSBTAP00000015703/1-795 VPPAEPNSDL QGVNVISVKD NDSLAARLAV EMKTDLLIVL SDVEGLFDSP bmy_19754T0/1-654 ---------- ----VISVKD NDSLAARLAV EMKTDLLIVL SDVEGLFDSP BACU012452/1-1242 VPPAEPNSDL QG--VISVKD NDSLAARLAV EMKTDLLIVL SDVEGLFDSP 701 750 ENSP00000360268/1-795 PGSDDAKLID IFYPGDQQSV TFGTKSRVGM GGMEAKVKAA LWALQGGTSV ENSTTRP00000003055/1-795 PGSDDAKLID IFYPGDQQSV TFGTKSRVGM GGMEAKVKAA LWALQGGTSV ENSBTAP00000015703/1-795 PGSDDAKLID IFYPGDQQSV TFGTKSRVGM GGMEAKVKAA LWALQGGTSV bmy_19754T0/1-654 PGSDDAKLID IFYPGDQQSV TFGTKSRVGM GGMEAKVKAA LWALQGGTSV BACU012452/1-1242 PGSDDAKLID IFYPGDQQSV TFGTKSRVGM GGMEAKVKAA LWALQGGTSV 751 800 ENSP00000360268/1-795 VIANGTHPKV SGHVITDIVE GKKVGTFFSE VKPAGPTVEQ QGEMARSGGR ENSTTRP00000003055/1-795 VIANGTHPKV SGHVITDIVE GKKVGTFFSE VKPAGPTVEQ QGEMARSGGR ENSBTAP00000015703/1-795 VIANGTHPKV SGHVITDIVE GKKVGTFFSE VKPAGPTVEQ QGEMARSGGR bmy_19754T0/1-654 VIANGTHPKV SGHVITDIVE GKKVGTFFSE VKPAGPTVEQ QGEMARSGGR BACU012452/1-1242 VIANGTHPKV SGHVITDIVE GKKVGTFFSE VKPAGPTVEQ QGEMARSGGR 801 850 ENSP00000360268/1-795 MLATLEPEQR AEIIHHLADL LTDQRDEILL ANKKDLEEAE GRLAAPLLKR ENSTTRP00000003055/1-795 MLATLEPEHR AEIIHHLADL LTDQRDEILL ANKKDLEEAE GRLAAPLLKR ENSBTAP00000015703/1-795 MLATLEPEQR AEIIHHLADL LTDQRDEILL ANKKDLEEAE GRLATPLLKR bmy_19754T0/1-654 LLATLDPEQR AEIIHHLADL LTDQRDEILL ANKKDLEEAE GRLAAPLLKR BACU012452/1-1242 LLATLEPEQR AEIIHHLADL LTDQRDEILL ANKKDLEEAE GRLAAPLLKR 851 900 ENSP00000360268/1-795 LSLSTSKLNS LAIGLRQIAA SSQDSVGRVL RRTRIAKNLE LEQVTVPIGV ENSTTRP00000003055/1-795 LSLSTSKLNS LAIGLRQIAA SSQDSVGRVL RRTRIAKDLE LEQVTVPFGV ENSBTAP00000015703/1-795 LSLSTSKLNS LAIGLRQIAA SSQDSVGRVL RRTRIAKDLE LEQVTVPIGV bmy_19754T0/1-654 LSLSTSKLNS LAIGLRQIAA SSQDSVGRVL RRTRIARDLE LEQVTVPIGV BACU012452/1-1242 LSLSTSKLNS LAIGLRQIAA SSQDSVGRVL RRTRIAKDLE LEQVTVPIGV 901 950 ENSP00000360268/1-795 LLVIFESRPD CLPQVAALAI ASGNGLLLKG GKEAAHSNRI LHLLTQEALS ENSTTRP00000003055/1-795 LLVIFESRPD CLPQVAALAI ASGNGLLLKG GKEASHSNRI LHLLTQEALS ENSBTAP00000015703/1-795 LLVIFESRPD CLPQVAALAI ASGNGLLLKG GKEASHSNRI LHLLTQEALS bmy_19754T0/1-654 LLVIFESRPD CLPQ------ ---------- ---------- ---------- BACU012452/1-1242 LLVIFESRPD CLPQVAALAI ASGNGLLLKG GKEASHSNRI LHLLTQEALS 951 1000 ENSP00000360268/1-795 IHGVKEAVQL VNTREEVEDL CRLDKMIDLI IPRGSSQLVR DIQKAAKGIP ENSTTRP00000003055/1-795 IHGIKEAVQL VNTREEVEDL CRLDKMIDLI IPRGSSQLVR NIQKAAKGIP ENSBTAP00000015703/1-795 IHGVKEAVQL VNTREEVEDL CRLDKMIDLI IPRGSSQLVR DIQKAAKGIP bmy_19754T0/1-654 ---------- VNTREEVEDL CRLDKMIDLI IPRGSSQLVR NIQKAAKGIP BACU012452/1-1242 IHGVKEAVQL VNTREEVEDL CRLDKMIDLI IPRGSSQLVR NIQKAAKGIP 1001 1050 ENSP00000360268/1-795 VMGHSEGICH MYVDSEASVD KVTRLVRDSK CEYPAACNAL ETLLIHRDLL ENSTTRP00000003055/1-795 VMGHSEGICH MYVDSEASVD KVTRLVRDSK CEYPAACNAL ETLLIHRDLL ENSBTAP00000015703/1-795 VMGHSEGICH MYVDSEASVD KVTRLVRDSK CEYPAACNAL ETLLIHRDLL bmy_19754T0/1-654 VMGHSEGICH MYVDSEASVD KVTRLVRDSK CEYPAACNAL ETLLIHRDLL BACU012452/1-1242 VMGHSEGICH MYVDSEASVD KVTRLVRDSK CEYPAACNAL ETLLIHRDLL 1051 1100 ENSP00000360268/1-795 RTPLFDQIID MLRVEQVKIH AGPKFASYLT FSPSEVKSLR TEYGDLELCI ENSTTRP00000003055/1-795 RTPLFDQIID MLRVEQVKIH AGPKFASYLT FSPSEVKSLR TEYGDLELCI ENSBTAP00000015703/1-795 RTPLFDQIID MLRVEQVKIH AGPKFASYLT FSPSEVKSLR TEYGDLELCI bmy_19754T0/1-654 RTPLFDQIID MLRVEQVKIH AGPKFASYLT FSPSEVKSLR TEYGDLELCI BACU012452/1-1242 RTPLFDQIID MLRVEQVKIH AGPKFASYLT FSPSEVKSLR TEYGDLELCI 1101 1150 ENSP00000360268/1-795 EVVDNVQDAI DHIHKYGSSH TDVIVTED-- ---------- ---------- ENSTTRP00000003055/1-795 EVVDSVQEAI DHIHKYGSSH TDVIVTEN-- ---------- ---------- ENSBTAP00000015703/1-795 EVVDSVQDAI DHIHKYGSSH TDVIVTEN-- ---------- ---------- bmy_19754T0/1-654 EVVDSVQEAI DHIHKYGSSH TDVIVTENDF SQVCMFNTWG STSGAWALPQ BACU012452/1-1242 EVVDSVQEAI DHIHKYGSSH TDVIITEN-- ---------- ---------- 1151 1200 ENSP00000360268/1-795 ---------- ---------- ------ENTA EFFLQHVDSA CVFWNASTRF ENSTTRP00000003055/1-795 ---------- ---------- ------EKTA EFFLQHVDSA CVFWNASTRF ENSBTAP00000015703/1-795 ---------- ---------- ------EKTA EFFLQHVDSA CVFWNASTRF bmy_19754T0/1-654 SGPVEWLEAG MFSLGHPNSV SSLYAAEKTA EFFLQHVDSA CVFWNASTRF BACU012452/1-1242 ---------- ---------- ------EKTA EFFLQHVDSA CVFWNASTRF 1201 1250 ENSP00000360268/1-795 SDGYRFGL-- ---------- ---------- ---------- ----GAEVGI ENSTTRP00000003055/1-795 SDGYRFGL-- ---------- ---------- ---------- ----GAEVGI ENSBTAP00000015703/1-795 SDGYRFGL-- ---------- ---------- ---------- ----GAEVGI bmy_19754T0/1-654 SDGYRFGL-- ---------- ---------- ---------- ----GAEVGI BACU012452/1-1242 SDGYRFGLER HSQVASELGI HPEDRTKEGV SSYAGLTYEH QKQTGAEVGI 1251 1300 ENSP00000360268/1-795 STSRIHARGP VGLEGLLTTK WLLRGKDHVV SDFSEHGSLK YLHENLPIPQ ENSTTRP00000003055/1-795 STSRIHARGP VGLEGLLTTK WLLRGQDHVV SDFSEHGSLK YLHENLPVPQ ENSBTAP00000015703/1-795 STSRIHARGP VGLEGLLTTK WLLRGQDHVV SDFSEHGSLK YLHENLPIPQ bmy_19754T0/1-654 STSRIHARGP VGLEGLLTTK WLLRGQDHVV SDFSEHGSLK YLHESLPIPQ BACU012452/1-1242 STSRIHARGP VGLEGLLTTK WLLRGQDHVV SDFSEHGSLK YLHESLPIPQ 1301 1350 ENSP00000360268/1-795 RNTN ENSTTRP00000003055/1-795 RSTN ENSBTAP00000015703/1-795 RNTN bmy_19754T0/1-654 RNTN BACU012452/1-1242 RNTN