KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:45 2014 Check: 00 .. Name: ENSBTAP00000015705/1-488 Len: 500 Check: 3758 Weight: 1.00 Name: ENSTTRP00000001580/1-482 Len: 500 Check: 6751 Weight: 1.00 Name: BACU006130/1-495 Len: 500 Check: 3044 Weight: 1.00 Name: bmy_17561T0/1-364 Len: 500 Check: 4411 Weight: 1.00 Name: ENSP00000225726/1-483 Len: 500 Check: 1250 Weight: 1.00 // 1 50 ENSBTAP00000015705/1-488 MKGIHAFCVI LLIFGSVSEA KFDDFEDEED IVEYDDNDFA EFEDVAEDSV ENSTTRP00000001580/1-482 MKAFHAFCVV LLIFGSVSEA KFDDFEDEED IVEYDDNDFA EFEDITEDSV BACU006130/1-495 MKAFHAFCVV LLIFGSVSEA KFDDFEDEED IVEYDDNDFA EFEDVTEDSV bmy_17561T0/1-364 -----MFV-- ---------- ---------- ---------- ---------- ENSP00000225726/1-483 MKAFHTFCVV LLVFGSVSEA KFDDFEDEED IVEYDDNDFA EFEDVMEDSV 51 100 ENSBTAP00000015705/1-488 TESPQRVIIT EDDEDETTVE LEGQDESQEG DFEDADTQEG DTESEPYDDE ENSTTRP00000001580/1-482 TESPQRVITT EDDEDETTVE LEGQDENQEG DFEDADTQXX XXXXXXXXXX BACU006130/1-495 TESPQRVITT EDDEDETTVE LEGQDENQEG DFEDADTQEG DTESEPYDDE bmy_17561T0/1-364 ---------- ---------- ---------- --------EG DTESEPYDDE ENSP00000225726/1-483 TESPQRVIIT EDDEDETTVE LEGQDENQEG DFEDADTQEG DTESEPYDDE 101 150 ENSBTAP00000015705/1-488 EFEGYEDKPD TSSSKSKDPI TIVDVPAHLQ NSWESYYLEI LMVTGLLAYI ENSTTRP00000001580/1-482 XXXXXXXXXX XXXXXXXXXX XXXXVPAHLQ NSWESYYLEI LMVTGLLAYI BACU006130/1-495 EFEGYEDKPD TSSSKNKDPI TIVDVPAHLQ NSWESYYLEI LMVTGLLAYI bmy_17561T0/1-364 EFEGYEDKPD TSSSKNKDPI TIVDVPAHLQ NSWESYYLEI LMVTGLLAYI ENSP00000225726/1-483 EFEGYEDKPD TSSSKNKDPI TIVDVPAHLQ NSWESYYLEI LMVTGLLAYI 151 200 ENSBTAP00000015705/1-488 MNYIIGKNKN SRLAQAWFNT HRELLESNFT LVGDDGTNKE ATSTGKLNQE ENSTTRP00000001580/1-482 MNYIIGKNKN SRLAQAWFNT HRELLESNFT LVGDDGTNKE ATSTGKLNQE BACU006130/1-495 MNYIIGKNKN SRLAQAWFNT HRELLESNFT LVGDDGTNKE ATSTGKLNQE bmy_17561T0/1-364 MNYIIGKNKN SRLAQAWFNT HRELLESNFT LVGDDGTNKE ATSTGKLNQE ENSP00000225726/1-483 MNYIIGKNKN SRLAQAWFNT HRELLESNFT LVGDDGTNKE ATSTGKLNQE 201 250 ENSBTAP00000015705/1-488 NEHIYNLWCS GRVCCEGMLI QLRFLKRQDL LNVLARMMRP VSDQVQIKVT ENSTTRP00000001580/1-482 NEHIYNLWCS GRVCCEGMLI QLRFLKRQDL LNVLARMMRP VSDQVXXXXX BACU006130/1-495 NEHIYNLWCS GRVCCEGMLI QLRFLKRQDL LNVLARMMRP VSDQVQIKVT bmy_17561T0/1-364 NEHIYNLWCS GRVCCEGMLI QLRFLKRQDL LNVLARMMRP VSDQV----- ENSP00000225726/1-483 NEHIYNLWCS GRVCCEGMLI QLRFLKRQDL LNVLARMMRP VSDQVQIKVT 251 300 ENSBTAP00000015705/1-488 MNDEDMDTYV FAVGARKALV RLQKEMQDLS EFCSDKPKSG AKYGLPDSLA ENSTTRP00000001580/1-482 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS EFCSDKPKSG AKYGLPDSLA BACU006130/1-495 MNDEDMDTYV FAVGTRKALV RLQKEMQDLS EFCSDKPKSG AKYGLPDSLA bmy_17561T0/1-364 ---------- ---------- ---------S EFCSDKPKSG AKYGLPDSLA ENSP00000225726/1-483 MNDEDMDTYV FAVGTRKALV RLQKEMQDLS EFCSDKPKSG AKYGLPDSLA 301 350 ENSBTAP00000015705/1-488 ILSEMGEVTD GMMDTKMLHF LTHYADKIES IHFSDQFSGP KLCKREKYPS ENSTTRP00000001580/1-482 ILSEMGEVTE GMMDTKMVHF LTHYADKIES VHFSDQFSGP KIMQEEGQPL BACU006130/1-495 ILSEMGEVTE GMMDTKMVHF LTHYADKIES VHFSDQFSGP KIMQEEGQPL bmy_17561T0/1-364 ILSEMGEVTE GMMDTKMVHF LTHYADKIES VHFSDQFSGP KIMQEEGQPL ENSP00000225726/1-483 ILSEMGEVTD GMMDTKMVHF LTHYADKIES VHFSDQFSGP KIMQEEGQPL 351 400 ENSBTAP00000015705/1-488 TKPNQIKQKM LRIAKVPHEG SLFLSSLPPP LPRLCFSLFL TSIYKTLKFE ENSTTRP00000001580/1-482 KLPDT-KRTL LFTFNVPGSG NTYPKDMEAL LPLMNMVIY- -SIDKAKKFR BACU006130/1-495 KLPDT-KRTL LFTFNVPGSG NTYPKDMEAL LPLMNMVIY- -SIDKAKKFR bmy_17561T0/1-364 KLPDT-KRTL LFTFNVPGSG NTYPKDMEAL LPLMNMVIY- -SIDKAKKFR ENSP00000225726/1-483 KLPDT-KRTL LFTFNVPGSG NTYPKDMEAL LPLMNMVIY- -SIDKAKKFR 401 450 ENSBTAP00000015705/1-488 ILTVQNKKQN TKKKIRIRQD IFHLTWGARN EPILLNSTVL SQKFRSEPIL ENSTTRP00000001580/1-482 -LNREGKQKA DKNRARVEEN FLKLTHVQRQ EAA-QSRREE KKRAEKERIM BACU006130/1-495 -LNREGKQKA DKNRARVEEN FLKLTHVQRQ EAA-QSRREE KKRAEKERIM bmy_17561T0/1-364 -LNREGKQKA DKNRARVEEN FLKLTHVQRQ EAA-QSRREE KKRAEKERIM ENSP00000225726/1-483 -LNREGKQKA DKNRARVEEN FLKLTHVQRQ EAA-QSRREE KKRAEKERIM 451 500 ENSBTAP00000015705/1-488 HQGKPETLQA LK-------- EAALRREQ-- --KKLEKKQM KMKQIKVKAM ENSTTRP00000001580/1-482 NEEDPEK-QR LE-------- EAALRREQ-- --KKLEKKQM KMKQIKVKAM BACU006130/1-495 NEEDPEKQRR LEVRQTFLIT VVKLRFIRMP ICATLAVKVI LCRNVHRLKV bmy_17561T0/1-364 NEEDPEKQRR LE-------- EAALRREQ-- --KKLEKKQM KMKQIKVKAM ENSP00000225726/1-483 NEEDPEKQRR LE-------- EAALRREQ-- --KKLEKKQM KMKQIKVKAM