KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:56:46 2014 Check: 00 .. Name: ENSP00000360261/1-620 Len: 639 Check: 8372 Weight: 1.00 Name: ENSBTAP00000015714/1-599 Len: 639 Check: 8083 Weight: 1.00 Name: bmy_11848T0/1-566 Len: 639 Check: 3581 Weight: 1.00 Name: ENSTTRP00000003058/1-619 Len: 639 Check: 2878 Weight: 1.00 // 1 50 ENSP00000360261/1-620 -------MRL ETAEAYVGP- -----GGPEC PMRTPQLALL QVFFLVFPDG ENSBTAP00000015714/1-599 ---------- ---------- ---------- -MFSLKLSLL QVFFLMVPER bmy_11848T0/1-566 PCDSSHPLSS DASRDHRNPP QTLWWGRLYY RMFTSQLALL QVFFLMVPEG ENSTTRP00000003058/1-619 -------TRL ETSETHLKP- -----RRLYY RMFTSQLALL QVFFLMVPVG 51 100 ENSP00000360261/1-620 VRPQPSSSPS GAVPTSLELQ RGTDGGTLQS PSEATATRPA VPGLPTVVPT ENSBTAP00000015714/1-599 VLSQPSPSQS RAMPTHSELG PRTQGGTLQS -SE------- VPGISTAGPT bmy_11848T0/1-566 VRPQPSPSPS GAVSTQSDLG PRTQGETLQS SSE------- VPGVSTVGPT ENSTTRP00000003058/1-619 VRPQPSPSPS GAVSTQSNLG PRTQGETLQS SSE------- VPGVSTVSPT 101 150 ENSP00000360261/1-620 LVTPSAPGNR TVDLFPVLPI CVCDLTPGAC DINCCCDRDC YLLHPRTVFS ENSBTAP00000015714/1-599 VVTSSTPGNK TVDLFPVLPI CVCDLTPGAC DINCCCDSDC YLLHPRTVFS bmy_11848T0/1-566 VVTPSAPGNR TVDLFPVLPI CVCDLTPGAC DMNCCCDRDC YLLHPRTVFS ENSTTRP00000003058/1-619 VVTPSAPGNR TVDLFPVLPI CVCDLTPGAC DMNCCCDRDC YLLHPRTVFS 151 200 ENSP00000360261/1-620 FCLPGSVRSS SWVCVDNSVI FRSNSPFPSR VFMDSNGIRQ FCVHVNNSNL ENSBTAP00000015714/1-599 FCLPGSVRSA SWVCVDNSLI FRSNSPFPSR VFMDSNGIKQ FCVHVNNSRL bmy_11848T0/1-566 FCLPGSVRSS SWVCVDNSLI FRSNSPFPSR VFMDSNGIKQ FCVHVNNSKL ENSTTRP00000003058/1-619 FCLPGSVRSS SWVCVDNSLI FRSNSPFPSR VFMDSNGIKQ FCVHVNNSKL 201 250 ENSP00000360261/1-620 NYFQKLQKVN ATNFQALAAE FGGESFTSTF QTQSPPSFYR AGDPILTYFP ENSBTAP00000015714/1-599 NYLQKLQKVN ATNFQALATE FGGESFTSTS QTQSPPSFYR AGDPILTYFP bmy_11848T0/1-566 NYFQKLQKVN ATSFQALATE FGGESFTSTF QTQSPPPFYR AGDPILTYFP ENSTTRP00000003058/1-619 TYFQKLQKVN ASSFQALATE FGGESFTSTF QTQSPPPFYR AGDPILTYFP 251 300 ENSP00000360261/1-620 KWSVISLLRQ PAGVGAGGLC AESNPAGFLE SKSTTCTRFF KNLASSCTLD ENSBTAP00000015714/1-599 KWSVISLLRQ PAGVGAGGLC AKSNPAGFLE SKSTTCARFF KNLADSCTSD bmy_11848T0/1-566 KWSVIGLLRQ PAGVGAGGLC AENNPAGFLE SKSTTCARFF KNLADSCTLD ENSTTRP00000003058/1-619 KWSVIGLLRQ PAGVGAGGLC AESNPAGFLE SKSTTCARFF KNLADSCTLD 301 350 ENSP00000360261/1-620 SALNAASYYN FTVLKVPRSM TDPQNMEFQV PVILTSQANA PLLAGNTCQN ENSBTAP00000015714/1-599 PALNAASYYN FTVLKVPRGM SDLQNMELQV PVTPVSQAGS PVLAGNTCQN bmy_11848T0/1-566 PTLNAASYHN FTVLKVPRGL SDLQNTKFQV PVTPVSQADS PLLAGNTCQN ENSTTRP00000003058/1-619 PTLNAASYHN FTVLKVPRGL SDLQNTKFQV PVTPVSQADS PLLAGNTCQN 351 400 ENSP00000360261/1-620 VVSQVTYEIE TNGTFGIQKV SVSLGQTNLT VEPGASLQQH FILRFRAFQQ ENSBTAP00000015714/1-599 VVAQVIYEIE TNGTFGIQKV SVSFGQTNLT VEPRTSLQQD FIIHFRAFQQ bmy_11848T0/1-566 VVSQVIYEIE TNGTFGIQKV SISFGQTNLT VEPGTSFQQH FILHFRAFQQ ENSTTRP00000003058/1-619 VVSQVIYEIE TNGTFGIQKV SISFGQTNLT VEPGTSFQQH FIIRFRAFQQ 401 450 ENSP00000360261/1-620 STAASLTSPR SGNPGYIVGK PLLALTDDIS YS-----SQG NGSCSVKRHE ENSBTAP00000015714/1-599 STAASLTGSR SGNPGYIVGK PLLVLTGDMR HSMTLLQSQG DGTCSIKRHE bmy_11848T0/1-566 STAASLTGFR SGNPGYIAEK PLLALTGDRR HSMTLLQSKG DGTCSIKRHE ENSTTRP00000003058/1-619 STAASLTGFR SGNPGYIAEK PLLALTGDRR HSMTLLQSKG DGTCSIKRHE 451 500 ENSP00000360261/1-620 VQFGVNAISG CKLRLKKADC SHLQQEIYQT LHGRPRPEYV AIFGNADPAQ ENSBTAP00000015714/1-599 VQFGVNAISG CKLRLKRVDC SHLQQELYQA LHGSPRPEHI AIFGNADPAQ bmy_11848T0/1-566 VQFGVNAISG CKLRLKRVDC SHLQQEIYQT LHGSLRPEHV AIFGNADPAR ENSTTRP00000003058/1-619 VQFGVNAISG CKLRLKRVDC SHLQQEIHQT LHGSPRPEHV AIFGNADPAQ 501 550 ENSP00000360261/1-620 KGGWTRILNR HCSISAINCT SCCLIPVSLE IQVLWAYVGL LSNPQAHVSG ENSBTAP00000015714/1-599 KGEWTRILSR NYSVSAMHCT SCCVIPVSLE IQILWAYIGL QSNPQAHVSG bmy_11848T0/1-566 KGEWARILSR NCSVSAMHCT SCCVIPVSLE IQILWAYVGL QSNPQAHVSG ENSTTRP00000003058/1-619 KGEWTRILSR NCSVSAMHCT SCCVIPVSLE IQILWAYVGL QSNPQAHVSG 551 600 ENSP00000360261/1-620 VRFLYQCQSI QDSQQVTEVS LTTLVNFVDI TQKPQPPRGQ PKMDWKWPFD ENSBTAP00000015714/1-599 ARFLYQLQSI QDSQPKTEVP LKTVVTFVDI TQKPEPPRGQ PRMDWKYPFD bmy_11848T0/1-566 ARFLYHCQPI QDQSTT---- ---------- ---------- ---------- ENSTTRP00000003058/1-619 ARFLYHCQPI QDSQQETEVP LTTVVTFVDI TQKPEPPRGQ PRMDWKLPLD 601 650 ENSP00000360261/1-620 -FFPFKVAFS RGVFSQKCSV SPILILCLLL LGVLNLETM ENSBTAP00000015714/1-599 FFFPFKMAFS RGEGSQKGSI FPIIILCLLL LGVLNHRD- bmy_11848T0/1-566 ---------- ---------- -----ICFSL -------DE ENSTTRP00000003058/1-619 FFFPFKMVFS RGVDSQKGSV SPILILCLLL LGVLNLETK