KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:50 2014 Check: 00 .. Name: ENSP00000344758/1-699 Len: 705 Check: 8604 Weight: 1.00 Name: ENSBTAP00000015726/1-679 Len: 705 Check: 3171 Weight: 1.00 Name: ENSTTRP00000007833/1-697 Len: 705 Check: 6962 Weight: 1.00 Name: bmy_18112T0/1-669 Len: 705 Check: 5337 Weight: 1.00 Name: BACU009580/1-697 Len: 705 Check: 8793 Weight: 1.00 // 1 50 ENSP00000344758/1-699 MKIAVLFCFF LLIIFQTDFG KNEEIPRKQR RKIYHRRLRK SSTSHKHRSN ENSBTAP00000015726/1-679 MKFSSLYCFL LLLIFQTDFG QNEETSRRQR RKMYHRRLRK SSLS-THRSV ENSTTRP00000007833/1-697 MKFSSLYCFL LLLVIQTDFG QNEETSRKER RKMYYRRQRK SSSP-IHRSS bmy_18112T0/1-669 MKFSSFYCFL LLLIFQTDFG QNEETSRKER RKMYYRRQRK SSSP-IHRSS BACU009580/1-697 MKFSSLYCFL LLLIFQTDFG QNEETSRKER RKMYYRRQRK SSSP-IHRSS 51 100 ENSP00000344758/1-699 RQLGIQQTTV FTPVARLPIV NFDYSMEEKF ESFSSFPGVE SSYNVLPGKK ENSBTAP00000015726/1-679 RQPGIQQMKT VTPAAKLPII NLDYSIEENF ESFLSVPGVE SSYNVLPGKK ENSTTRP00000007833/1-697 RQLGIQQMRI VTPAATLPMV NLDYSTEEKF ESFLRFPGVE ASYNVLPGKK bmy_18112T0/1-669 RQLGIKQMRI VTPAATLPMV NLDYSTEEKF ESFLRFPGVE SSYNVLPGKK BACU009580/1-697 RQLGIKQMRI VTPAATLPMV NLDYSTEEKF ESFLRFPGVE SSYNVLPGKK 101 150 ENSP00000344758/1-699 GHCLVKGITM YNKAVWSPEP CTTCLCSDGR VLCDETMCHP QRCPQTVIPE ENSBTAP00000015726/1-679 GHCLANGMIM YNKAVWSPEP CTTCLCLNGK VLCDETKCHP QMCPQTIIPE ENSTTRP00000007833/1-697 GHCLANGMIM YNKAVWSPEP CTTCLCSNGR VLCDETKCHP QMCPQTVTLE bmy_18112T0/1-669 GHCLANGMTM YNKAVWSPEP CTTCLCSNGR VLCDETKCHP QMCPQTVIPE BACU009580/1-697 GHCLANGMTM YNKAVWSPEP CTTCLCSNGR VLCDETKCHP QMCPQTVTPE 151 200 ENSP00000344758/1-699 GECCPVCSAT V-SYSLLSGI ALNDRNEFSG DSSEQREPTN LLHKQLPPPQ ENSBTAP00000015726/1-679 GECCPVCSDT ---------- ---------- ---EQREPTN LPHKQQSPPW ENSTTRP00000007833/1-697 GECCPVCSDT A-SYLLLSSI ALNDRTEFSG DSSEQREPTS LLHKQQPSPW bmy_18112T0/1-669 GECCPVCSDT ---------- ---------- ---EQREHTS LLHKQQPSPW BACU009580/1-697 GECCPVCSDT VASYLLLSSI ALNDRTEFSG DSSEQREHTS LLHKQQPSPW 201 250 ENSP00000344758/1-699 VGMDRIVRKE ALQSEEDEE- -VKEEDTEQK RETPESRNQG QLYSEGDSRG ENSBTAP00000015726/1-679 EEMNRALRKE ELQLEEDEEE VKQDENREQK KKTFRPGDWG RPINEGQSRE ENSTTRP00000007833/1-697 VEMHQALRKE ELQFEEEEE- IKQDEDREQK EKIPRPGDWG RPPNERQSRE bmy_18112T0/1-669 VEMHPALRKE ELQFEEDEEE IKQDEDREQK EKIPRPGDWG RPPNEGQSRE BACU009580/1-697 VEMHPALRKE ELQFEEDEEE IKQDEDREQK EKIPRPGDWG RPPNEGQSRE 251 300 ENSP00000344758/1-699 GDRKQRPGEE RRLAHQQQRQ GREEEEDE-- -EEEGEEGEE DEEDEEDPVR ENSBTAP00000015726/1-679 G-KAQRPEEE GRQAHQHRNP ARENEEDDDE EEEDDDDEEE DDDDEDETIR ENSTTRP00000007833/1-697 G-GEQRPGEK GRQAHQHRNP ARENENED-- -EDEDEDEDE DEDD-DDAVR bmy_18112T0/1-669 G-GEQRPGEE GRQAHQHRNP ARENED---- -EDEDEDEDE DDDD---TVR BACU009580/1-697 G-GEQRPGEE GRQAHQHRNP ARENEDED-- -EDEDEDEDE DDDD---TLR 301 350 ENSP00000344758/1-699 GDMFRMPSRS PLPAPPRGTL RLPSGCSLSY RTISCINAML TQIPPLTAPQ ENSBTAP00000015726/1-679 GDTFRMPPRL PIPATPRGIP SLPSMCSLSY KTISCISADL TQIPPLTAPE ENSTTRP00000007833/1-697 GDMFRMPSQL PIPATPRGIP PLPSRCSLSY KTISCISADL TQIPPLTAPE bmy_18112T0/1-669 GDMFRMPSQL PIPATPRGIP PLPSRCSLSY KTISCISADL TQIPPLTAPE BACU009580/1-697 GDMFRMPSQL PIPATPRGIP PLPSRCSLSY KTISCISADL TQIPPLTAPE 351 400 ENSP00000344758/1-699 ITSLELTGNS IASIPDEAFN GLPNLERLDL SKNNITSSGI GPKAFKLLKK ENSBTAP00000015726/1-679 ITSLELIDNS ITSIPDEAFN GL-NLERLDL SKNNITSSGI GPKAFKFLKN ENSTTRP00000007833/1-697 ITSLELIGNS ITSIPDEAFN GLPNLERLDL SRNNITSSGI GPKAFKLLKK bmy_18112T0/1-669 ITSLELIGNS ITSIPDEAFN GLPNLERLDL SKNNVTSSGI GPKAF---KN BACU009580/1-697 ITSLELIGNS ITSIPDEAFN GLPNLERLDL SKNNVTSSGI GPKAFKLLKN 401 450 ENSP00000344758/1-699 LMRLNMDGNN LIQIPSQLPS TLEELKVNEN NLQAIDEESL SDLNQLVTLE ENSBTAP00000015726/1-679 LMRLNMDGNN LVTIPSELPS TLEELKINEN KLQVIDEESL SDLNQLVTLE ENSTTRP00000007833/1-697 LMRLNMDGNN LVAIPSELPS TLEELKINEN NLQVIDEESL SDLNQLATLE bmy_18112T0/1-669 LMRLNMDGNN LVAIPSELPS TLEELKINEN NLQVIDEESL SDLNQLVTLE BACU009580/1-697 LMRLNMDGNN LVAIPSELPS TLEELKINEN NLQFIDEESL SDLNQLVTLE 451 500 ENSP00000344758/1-699 LEGNNLSEAN VNPLAFKPLK SLAYLRLGKN KFRIIPQGLP GSIEELYLEN ENSBTAP00000015726/1-679 LEGNNLSETN VNSLAFKPLK SLSYLRLGRN KFRIIPQGLP ASIEELYLEN ENSTTRP00000007833/1-697 LEGNSLSETN VNSLAFKPLK SLSYLRLGRN KFRIIPQGLP ASIEELYLEN bmy_18112T0/1-669 LEGNSLSETN VNSLAFKPLK SLSYLRLGRN KFRIIPQGLP ASIEELYLEN BACU009580/1-697 LEGNSLSETN VNSLAFKPLK SLSYLRLGRN KFRIIPQGLP ASIEELYLEN 501 550 ENSP00000344758/1-699 NQIEEITEIC FNHTRKINVI VLRYNKIEEN RIAPLAWINQ ENLESIDLSY ENSBTAP00000015726/1-679 NQIEEITEIS FNHTRKINVI GLRYNKIEEN RIAPLAWINQ ENLESIDLSY ENSTTRP00000007833/1-697 NQIEEITEIS FNHTRKINVI VLRYNKIEEN RIASLAWINQ ENLESIDLSY bmy_18112T0/1-669 NQIEEITEIS FNHTRKINVI VLRYNKIEEN RIAPLAWINQ ENLESIDLSY BACU009580/1-697 NQIEEITEIS FNHTRKINVI VLRYNKIEEN RIAPLAWINQ ENLESIDLSY 551 600 ENSP00000344758/1-699 NKLYHVPSYL PKSLLHLVLL GNQIERIPGY VFGHMEPGLE YLYLSFNKLA ENSBTAP00000015726/1-679 NKLYHVPSYL PKSLVHLVLI GNQIERIPGY VFGHMEPGLE YLYLSFNKLV ENSTTRP00000007833/1-697 NKLYHVPSYL PKSLLHLVLI GNQIERIPGF VFGHMEPGLE YLYLSFNKLV bmy_18112T0/1-669 NKLYHVPSYL PKSLLHLVLI GNQIERIPGF VFGHMEPGLE YLYLSFNKLV BACU009580/1-697 NKLYHVPSYL PKSLLHLVLI GNQIERIPGF VFGHMEPGLE YLYLSFNKLV 601 650 ENSP00000344758/1-699 DDGMDRVSFY GAYHSLRELF LDHNDLKSIP PGIQEMKALH FLRLNNNKIR ENSBTAP00000015726/1-679 DDGIDRVSFY GAYHSLRELF LDHNELKSIP PGVQEMKALH FLRLNNNKIR ENSTTRP00000007833/1-697 DDGIDQVSFY GAYHSLRELF LDHNELKSIP PGVPEMKALH FLRLNNNKIR bmy_18112T0/1-669 DDGIDRVSFY GAYHSLRELF LDHNELKSIP PGVQEMKALY FLRLNNNKIR BACU009580/1-697 DDGIDRVSFY GAYHSLRELF LDHNELKSIP PGVQEMKALH FLRLNNNKIR 651 700 ENSP00000344758/1-699 NILPEEICNA EEDDDSNLEH LHLENNYIKI REIPSYTFSC IRSYSSIVLK ENSBTAP00000015726/1-679 NILPEQICNA EEDDDSNLQH LHLENNYIKT REIPSYAFSC IRSYSSIVLK ENSTTRP00000007833/1-697 NILPEQICNS EEDGDSTLEH LHLENNYIKT REISPYAFSC IRSYSSVVLK bmy_18112T0/1-669 NILPEQICNS EEDGDSTLEH LHLENNYIKT REISSYAFSC IRSYSSVVLK BACU009580/1-697 NILPEQICNS EEDGDSTLEH LHLENNYIKT REISSYAFSC IRSYSSVVLK 701 750 ENSP00000344758/1-699 PQNIK ENSBTAP00000015726/1-679 PQNIK ENSTTRP00000007833/1-697 PQNIK bmy_18112T0/1-669 PQNIK BACU009580/1-697 PQNIK