KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:52 2014 Check: 00 .. Name: BACU009579/1-252 Len: 562 Check: 3612 Weight: 1.00 Name: ENSP00000287996/1-491 Len: 562 Check: 2140 Weight: 1.00 Name: ENSBTAP00000015737/1-491 Len: 562 Check: 3777 Weight: 1.00 Name: bmy_04150T0/1-462 Len: 562 Check: 4951 Weight: 1.00 Name: ENSTTRP00000007854/1-491 Len: 562 Check: 6116 Weight: 1.00 // 1 50 BACU009579/1-252 ---------- ---------- ---------- ---------- ---------- ENSP00000287996/1-491 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015737/1-491 ---------- ---------- ---------- ---------- ---------- bmy_04150T0/1-462 MSGAWLPAAS ACECGRLGLA EAAADRSSSP VGCGWCLGEP AAPSSWPREA ENSTTRP00000007854/1-491 ---------- ---------- ---------- ---------- ---------- 51 100 BACU009579/1-252 ------MESS ---------- ---------- ----CL---- -------SCT ENSP00000287996/1-491 ------MEEG KMDENEWGYH GEGNKSLVVA HAQRCVVLRF LKFPPNRKKT ENSBTAP00000015737/1-491 ------MDEG KMDENEWRYH GEGNKSLVVA HAQRCVVLRF LKFPPNRKKT bmy_04150T0/1-462 PGPHRGMDEG KMDENEWGYH GEGNKSLVVA HAQRCVVLRF LKFPPNRKKT ENSTTRP00000007854/1-491 ------MDEG KMDENEWGYH GEGNKSLVVA HAQRCVVLRF LKFPPNRKKT 101 150 BACU009579/1-252 DPQLFSLL-- ---------- ---------- ---------- ---------- ENSP00000287996/1-491 SEEIFQHLQN IVDFGKNVMK EFLGENYVHY GEVVQLPLEF VKQLCLKIQS ENSBTAP00000015737/1-491 SEEIFQHLQN IVDFGKNVMK EFLGENYVHC GPVSSIPLGF FRILTLSSSL bmy_04150T0/1-462 SEEIFQHLQN IVDFGKNVMK EFLGENYVHC G--------- -----IRALN ENSTTRP00000007854/1-491 SEEIFQHLQN IVDFGKNVMK EFLGENYVHC GEVVQLPLDF VKQLCLKIQC 151 200 BACU009579/1-252 CFPESRCDKD LDTLSGYALC LPNLARLQTY RFAEHRPILC VEI------- ENSP00000287996/1-491 ERPESRCDKD LDTLSGYAMC LPNLTRLQTY RFAEHRPILC VEI------- ENSBTAP00000015737/1-491 CSPESRCDKD LYTLSGYALC LPNLARLQTY QFAERRPILC VEI------- bmy_04150T0/1-462 RLAESRCDKD LDTLSGYALC LPNLARLQTY HFAEHRPILC VEIKVNFCQG ENSTTRP00000007854/1-491 ERPESRCDKD LDTLSGYALC LPNLARLQTY HFAEHRPILC VEI------- 201 250 BACU009579/1-252 ---------- KVNF------ ---------C Q--------- ---------- ENSP00000287996/1-491 --------KP KCGFIPFSSD VTHEMKHKVC RYCMHQHLKV ATGKWKQISK ENSBTAP00000015737/1-491 --------KP KCGFIPSSSD VTHELKHRVC RYCMHQHLKV ATGKWKQISK bmy_04150T0/1-462 GNGVGEKGKP KCGFIPFSSD VTHEMKHKVC RYCMHQHLKV ATGKWKQISK ENSTTRP00000007854/1-491 --------KP KCGFIPFSSD VTHEMKHKVC RYCMHQHLKV ATGKWKQISK 251 300 BACU009579/1-252 -------GGN ---------- ---------- ---------- ---------- ENSP00000287996/1-491 YCPLDLYSGN KQRMHFALKS LLQEAQNNLK IFKNGELIYG CKDARSPVAD ENSBTAP00000015737/1-491 YCPLDLYSGN KQRMYFALKS LLQEAQNNLK IFKNGELIYG CKDARSPMAD bmy_04150T0/1-462 YCPLDLYSGN KQRMYFALKS LLQEAQNNLK IFKNGELIYG CKDARSPVAD ENSTTRP00000007854/1-491 YCPLDLYSGN KQRMYFALKS LLQEAQNNLK IFKNGELIYG CKDARSPVAD 301 350 BACU009579/1-252 ---------- ---------- ---------- ---------- ---------- ENSP00000287996/1-491 WSELAHHLKP FFFPSNGLAS GPHCTRAVIR ELVHVITRVL LSGSDKGRAG ENSBTAP00000015737/1-491 WSELAHHLKP FFFPSNGLAS GPHCTRAVIR ELVRVITRVL LSGSDKGRAG bmy_04150T0/1-462 WSELAHHLKP FFFPSNGLAS GPHCTRAVIR ELVRVITRVL LSGSDKGRAG ENSTTRP00000007854/1-491 WSELAHHLKP FFFPSNGLAS GPHCTRAVIR ELVRVITRVL LSGSDKGRAG 351 400 BACU009579/1-252 ---------- ---------- ------GKNT PERSGLPKGC LLYKTLQVQM ENSP00000287996/1-491 TLSPGLGPQG PRVCEASPFS RSLRCQGKNT PERSGLPKGC LLYKTLQVQM ENSBTAP00000015737/1-491 ALRSGPGLRG PPVCEASPFS RSLRCQGKNT PERSGLPKGC LLYKTLQVQM bmy_04150T0/1-462 ALRSGPGLRG PPVCEASPFS RSLRCQGKNT PEHSGLPKGC LLYKTLQVQM ENSTTRP00000007854/1-491 ALRSGPGLRG PPICEASPFS RSLRCQGKNT PERSGLPKGC LLYKTLQVQM 401 450 BACU009579/1-252 LDLLDIEGLY PLYRRVERYL EEFPEERKTL QIDGPYDEAF YQRLLDLSTE ENSP00000287996/1-491 LDLLDIEGLY PLYNRVERYL EEFPEERKTL QIDGPYDEAF YQKLLDLSTE ENSBTAP00000015737/1-491 LDLLDIEGLY PLYRRVERYL EEFPEERKTL QIDGPYDEAF YQRLLDLSTE bmy_04150T0/1-462 LDLLDIEGLY PLYRRVERYL EEFPEERKTL QIDGPYDEAF YQRLLDLSTE ENSTTRP00000007854/1-491 LDLLDIEGLY PLYRRVERYL EEFPEERKTL QIDGPYDEAF YQRLLDLSTE 451 500 BACU009579/1-252 DDGTVAFALT K---YRVSMT AKDCSLMIAL SPCLQDASSD QRPIVPSSRS ENSP00000287996/1-491 DDGTVAFALT KVQQYRVAMT AKDCSIMIAL SPCLQDASSD QRPVVPSSRS ENSBTAP00000015737/1-491 DDGTVAFALT KVQQYRVAMT AKDCSIMIAL SPCLQDASSD QRPVVPSSRS bmy_04150T0/1-462 DDGTVAFALT K--------- ---------- ---------- ---------- ENSTTRP00000007854/1-491 DDGTVAFALT KXXXXXXXXX XXXXXXXXXX XXXXXXXXSD QRPIVPSSRS 501 550 BACU009579/1-252 RFAFSVSVLD LDLKPYESIP HQYKLDGKIV NYYLKTVHAK DATVMSTRFK ENSP00000287996/1-491 RFAFSVSVLD LDLKPYESIP HQYKLDGKIV NYYSKTVRAK DNAVMSTRFK ENSBTAP00000015737/1-491 RFAFSVSVLD LDLKPYESIP HQYKLDSKIV NYYLKTVHAK DATVMSTRFK bmy_04150T0/1-462 ---------- ---------- ---------- ---------- ----VGRSFQ ENSTTRP00000007854/1-491 RFAFSVSVLD LDLKPYESIP HQYKLDGKIV NYYLKTVHAK DATVMSTRFK 551 600 BACU009579/1-252 ESEDCTLVLH KV ENSP00000287996/1-491 ESEDCTLVLH KV ENSBTAP00000015737/1-491 ESEDCTLVLH KV bmy_04150T0/1-462 KHTVCFLGS- -- ENSTTRP00000007854/1-491 ESEDCTLVLH KV