KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:54 2014 Check: 00 .. Name: ENSBTAP00000015746/1-417 Len: 590 Check: 2250 Weight: 1.00 Name: ENSP00000308219/1-478 Len: 590 Check: 5895 Weight: 1.00 Name: ENSTTRP00000013003/1-587 Len: 590 Check: 2505 Weight: 1.00 Name: bmy_14962T0/1-286 Len: 590 Check: 952 Weight: 1.00 Name: BACU017806/1-354 Len: 590 Check: 3445 Weight: 1.00 // 1 50 ENSBTAP00000015746/1-417 ---------- ---------- ---------- ---------- ---------- ENSP00000308219/1-478 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013003/1-587 LPHAPSPRRR RRAAACRALT QQSGNRDSSP RAGTSLLPRV TAAPTWGREA bmy_14962T0/1-286 ---------- ---------- ---------- ---------- ---------- BACU017806/1-354 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000015746/1-417 ---------- ---------- ---------- ---------- ---------- ENSP00000308219/1-478 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013003/1-587 AAALPLSAPA AWLAAYFPSW QASRCRQGNA CGPACSGAQG SPDPAKPPPG bmy_14962T0/1-286 ---------- ---------- ---------- ---------- ---------- BACU017806/1-354 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000015746/1-417 ---------- ---------- ---------- ---------- ---------- ENSP00000308219/1-478 -----MIRKK RKRSAPPGPC RSHGPRPATA PAPPPSPEPT RPAWTGMGLR ENSTTRP00000013003/1-587 TEGLRMMRKK RKRGASSGPC RSHGPGPATA PAPPPSPEPT RPAWTGMGLR bmy_14962T0/1-286 ---------- ---------- ---------- ---------- ---------- BACU017806/1-354 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000015746/1-417 ---------- ---------- RRPGLGPPPL ALLLLLLLSL GLLHAGDCQQ ENSP00000308219/1-478 AAPSSAA--- -AAAAEVEQR RSPGLCPPPL ELLLLLLFSL GLLHAGDCQQ ENSTTRP00000013003/1-587 AASSCAAAAA LAAAAGAEQC PRPRLCPPPL ALLLLLLLSL GLLHAGDCQQ bmy_14962T0/1-286 ---------- ---------- -MQNLAGEP- ---------- ---------- BACU017806/1-354 ---------- ---------- ------MPPQ GRWVYVVPST SLLGIP---- 201 250 ENSBTAP00000015746/1-417 PAQCRIQKCT TDFVSLTSHL NSAVDGFDSE FCKALRAYAG CTQRTSKACR ENSP00000308219/1-478 PAQCRIQKCT TDFVSLTSHL NSAVDGFDSE FCKALRAYAG CTQRTSKACR ENSTTRP00000013003/1-587 PAQCRIQKCT TDFVFLTSNM NSAIDGFDSE FCKALRAYAG CTQRTSKACR bmy_14962T0/1-286 --------CS ENMMLLGLER TSGEIG---- ---------- ------SVER BACU017806/1-354 --------SQ ESAWLATLPA RCVPKG---- ---------- ----ETRAIF 251 300 ENSBTAP00000015746/1-417 GNLVYHSAVL GISDLMSQRN CSKDGPTSST NPEVTHDPCN YHSHAGA--- ENSP00000308219/1-478 GNLVYHSAVL GISDLMSQRN CSKDGPTSST NPEVTHDPCN YHSHAGA--- ENSTTRP00000013003/1-587 GNLVYHSAVL GISDLMSQRN CSKDGPTSST NPEVTHDPCN YHSHAGA--- bmy_14962T0/1-286 GAL-----SI GVTVSVTGIA EDNNVRVFEM TPELEL---- ---------- BACU017806/1-354 SSL----PAL GLPGFLAHLH TSAEIHVSSG PPSTPLAVRG SFWPAGTLRE 301 350 ENSBTAP00000015746/1-417 REHRGGDQNP PNYLFCGLFG DPHLRTFKDH FQTCKVEGAW PLIDNNYLSV ENSP00000308219/1-478 REHRRGDQNP PSYLFCGLFG DPHLRTFKDN FQTCKVEGAW PLIDNNYLSV ENSTTRP00000013003/1-587 REHRGGDQNP PNYLFCGLFG DPHLRTFKDH FQTCKVEGAW PLIDNNYLSV bmy_14962T0/1-286 ---------- ---------- ---------- ---------- ---------- BACU017806/1-354 RDERGGSLRT GSAGYVG--- ---------- ------RKAF SVLGWGWGG- 351 400 ENSBTAP00000015746/1-417 QVTNVPVVPG SSATATNKIT IIFKAHRECT DQKVYQAVTD DLPAAFVDGS ENSP00000308219/1-478 QVTNVPVVPG SSATATNKIT IIFKAHHECT DQKVYQAVTD DLPAAFVDGT ENSTTRP00000013003/1-587 QVTNVPVVPG SSATATDKIT IIFKAHRECT DQKVYQAVTD DLPAAFVDGS bmy_14962T0/1-286 ---------- -----VDLIT IIFKAHRECT DQKVYQAVTD DLPAAFVDGS BACU017806/1-354 --DTMPV--- -SLLGLTQIT IIFKAHRECT DQKVYQAVTD DLPAAFVDGS 401 450 ENSBTAP00000015746/1-417 TSGGDGDPKS LRIVERESGR SVEMHARYMG TTVFVRQLGR YLTLAIRMPE ENSP00000308219/1-478 TSGGDSDAKS LRIVERESGH YVEMHARYIG TTVFVRQVGR YLTLAIRMPE ENSTTRP00000013003/1-587 TSGGDGDIKS LRIVERESGR YVEMHARYIG TTVFVRQLGR YLTLAVRMPE bmy_14962T0/1-286 TSGGDGDTKS LRIVERESGR HVEMHARYIG TTVFVRQLGR YLTLAVRMPE BACU017806/1-354 TSGGDGDTKS LRIVERESGR YVEMHARYIG TTVFVRQLGR YLTLAVRMPE 451 500 ENSBTAP00000015746/1-417 ALAMAYEESQ DLQLCVTGCP LGERIDDGQG QVSAILGPGL PRSPAAPAWP ENSP00000308219/1-478 DLAMSYEESQ DLQLCVNGCP LSERIDDGQG QVSAILGHSL PRTSLVQAWP ENSTTRP00000013003/1-587 DLAMSYEESQ DLQLCVNGCP LSERIDDGQG QVSAILGHSL PHTSSAQAWP bmy_14962T0/1-286 DLAMSYEESQ DLQLCVNGCP LSERIDDGQG QVSAILGHSL PHTSSAQAWP BACU017806/1-354 DLAMSYEESQ DLQLCVNGCP LSERIDDGQG QVSAILGHSL PHTSSAQAWH 501 550 ENSBTAP00000015746/1-417 GYTLETASAR CHEQMPVKDI YFQSCVFDLL TTGDANFTAA AHSALEDVEA ENSP00000308219/1-478 GYTLETANTQ CHEKMPVKDI YFQSCVFDLL TTGDANFTAA AHSALEDVEA ENSTTRP00000013003/1-587 GYTLETANAQ CHEKMPVKDI YFQSCVFDLL TTGDANFTAA AHSALEDVAA bmy_14962T0/1-286 GYTLETANAQ CHEKMPVKDI YFQSCVFDLL TTGDANFTAA AHSALEDVAA BACU017806/1-354 GYTLETANAQ CHEKMPVKDI YFQSCVFDLL TTGDANFTAA AHSALEDVAA 551 600 ENSBTAP00000015746/1-417 LHPRKERWHI FPSSARGAPR GRPLSSVSLG LTCLILVVFL ENSP00000308219/1-478 LHPRKERWHI FPSSGNGTPR GGSDLSVSLG LTCLILIVFL ENSTTRP00000013003/1-587 LHPRKERWHI FPSSGLGTPR GDSHLSVSLG LACSILIVFL bmy_14962T0/1-286 LHPRKERWHI FPSSGRGTPR GDSHLSVSLG LACSILIVFL BACU017806/1-354 LHPRKERWHI FPSSGRGTPR GDSRLSVSLG LACSILIVFL