KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:56:55 2014 Check: 00 .. Name: ENSTTRP00000007482/1-775 Len: 1002 Check: 8396 Weight: 1.00 Name: ENSBTAP00000015749/1-740 Len: 1002 Check: 567 Weight: 1.00 Name: bmy_03060T0/1-994 Len: 1002 Check: 3497 Weight: 1.00 Name: ENSP00000218894/1-779 Len: 1002 Check: 8005 Weight: 1.00 // 1 50 ENSTTRP00000007482/1-775 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015749/1-740 ---------- ---------- ---------- ---------- ---------- bmy_03060T0/1-994 MTRRNFGKRK NSFLGDNIAQ EEYGKWEEET NVESWGKQTI KKQQRYLWRG ENSP00000218894/1-779 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007482/1-775 ---------- ---------- ---------- -------MQQ ALELALDRAE ENSBTAP00000015749/1-740 ---------- ---------- ---------- -------MQQ ALELALDRAE bmy_03060T0/1-994 VCRVTGLFPI QSTLRLISKA TAQYVNILRM FSSFISIKQQ ALELALDRAE ENSP00000218894/1-779 ---------- ---------- ---------- -------MQQ ALELALDRAE 101 150 ENSTTRP00000007482/1-775 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX-KLRRNVN ENSBTAP00000015749/1-740 YVIESARQRP PKRKYLSSGR KSIFQKLYDL YIEECEKEPE VKQKLRRNVN bmy_03060T0/1-994 YVIESARQRP PKRKYLSSGR KSIFQKLYDL YIEECEKEPE VKQKLRRNVN ENSP00000218894/1-779 YVIESARQRP PKRKYLSSGR KSVFQKLYDL YIEECEKEPE VK-KLRRNVN 151 200 ENSTTRP00000007482/1-775 LLEKLVMQET LSCLVVNLYP GNEGYSLMLR GKNGSDSETI RLPYEEGELL ENSBTAP00000015749/1-740 LLEKLVMQET LSCLVVNLYP GNEGYSLMLR GKNGSDSETI RLPYEEGELL bmy_03060T0/1-994 LLEKLVMQET LSCLVVNLYP GNEGYSLMLR GKNGSDSETI RLPYEEGELL ENSP00000218894/1-779 LLEKLVMQET LSCLVVNLYP GNEGYSLMLR GKNGSDSETI RLPYEEGELL 201 250 ENSTTRP00000007482/1-775 EYLDAEELPP ILVDLLEKSQ VNIFHCGCVI AEIRDYRQSS NMKSPGYQSR ENSBTAP00000015749/1-740 EYLDAEELPP ILVDLLEKSQ VNIFHCGCVI AEIRDYRQSS NMKSPGYQSR bmy_03060T0/1-994 EYLDAEELPP ILVDLLEKSQ VNIFHCGCVI AEIRDYRQSS NMKSPGYQSR ENSP00000218894/1-779 EYLDAEELPP ILVDLLEKSQ VNIFHCGCVI AEIRDYRQSS NMKSPGYQSR 251 300 ENSTTRP00000007482/1-775 HILLRPTMHX XXXXXXXXXX XXXXXXXEDK LLLESQLILA TAEPLCLDPS ENSBTAP00000015749/1-740 HILLRPTMQT LICDVHSITS DNHKWTQEDK LLLESQLILA TAEPLCLDPS bmy_03060T0/1-994 HILLRPTMQT LICDVHSITS DNHKWTQEDK LLLESQLILA TAEPLCLDPS ENSP00000218894/1-779 HILLRPTMQT LICDVHSITS DNHKWTQEDK LLLESQLILA TAEPLCLDPS 301 350 ENSTTRP00000007482/1-775 IAVTCTANRL LYNKQKMNTR PMKRXXXXXX XXXXNRQQDL SHC--PLQLK ENSBTAP00000015749/1-740 IAVTCTANRL LYNRQKMNTR PMKRCFKRYS RSSLNRQQDL SHCPPPPQLK bmy_03060T0/1-994 VAVTCTANRL LYNKQKMNTR PMKRCFKRYS RSSLNRQQDL SHCPPPPQLK ENSP00000218894/1-779 IAVTCTANRL LYNKQKMNTR PMKRCFKRYS RSSLNRQQDL SHCPPPPQLR 351 400 ENSTTRP00000007482/1-775 LLDFLQKRKE RKAGQHYDLK ISKAGNCVDM WKRSPCNLAI PSEVDXXXXX ENSBTAP00000015749/1-740 LLDFLQKRKE RKAGQHYDLK ISKAGNCVDM WKRSPCNLAV PSEVDVEKYA bmy_03060T0/1-994 LLDFLQKRKE RKAGQHYDLK ISKAGNCVDM WKRSPCNLAI PSEVDVEKYA ENSP00000218894/1-779 LLDFLQKRKE RKAGQHYDLK ISKAGNCVDM WKRSPCNLAI PSEVDVEKYA 401 450 ENSTTRP00000007482/1-775 XXXXXXXXXX XXXXXXXXXD VKDDYIFECE AGNPYQKTKL TILQSLGDPL ENSBTAP00000015749/1-740 KVEKSIKSDD SQPTVWPAHD VKDDYIFECE AGNQYQKTKL TILQSLGDPL bmy_03060T0/1-994 KVEKSIKSDD SQPTVWPAHD VKDDYIFECE AGNPYQKTKL TILQSLGDPL ENSP00000218894/1-779 KVEKSIKSDD SQPTVWPAHD VKDDYVFECE AGTQYQKTKL TILQSLGDPL 451 500 ENSTTRP00000007482/1-775 YYGKIQPCKE DEESDSQMSP SHFSTDDHSN WFIIGSKTDA ERVVSQYQEL ENSBTAP00000015749/1-740 YYGKIQPCKE DEESDSPMSP SHFSTDDHSN WFIIGSKTDA ERVVSQYQEL bmy_03060T0/1-994 YYGKIQPCKE DEENDSQMSP SHFSTDDHSN WFIIGSKTDA ERVVSQYQEL ENSP00000218894/1-779 YYGKIQPCKA DEESDSQMSP SHSSTDDHSN WFIIGSKTDA ERVVNQYQEL 501 550 ENSTTRP00000007482/1-775 VQNEAKCPVK MSHSSSGSAS LSQPSPGKET EQPETLSVQS SVLGKGVKHR ENSBTAP00000015749/1-740 VQNEAKCPVK MSHSSSGSAS LSQLSPGKET EQPETVSVQS SVLGKGVKHR bmy_03060T0/1-994 VQNEAKCPVK MSHSSSGSAS LSQPSPGKET EQPETLSVQS SVLGKGVKHR ENSP00000218894/1-779 VQNEAKCPVK MSHSSSGSAS LSQVSPGKET DQTETVSVQS SVLGKGVKHR 551 600 ENSTTRP00000007482/1-775 PPPIKLPSSS GNSSSGNYFT PQQVSSFLKS PTPPPASKPP SLSRKSSMDL ENSBTAP00000015749/1-740 PPPIKLPSTS GNSSSGNYFT PQQASSFLKS PTPPPASKPP SLSRKSSVDL bmy_03060T0/1-994 PPPIKLPSSS GNSSSGNYFT PQQVSSFLKS PTPPPASKPP SLSRKSSMDL ENSP00000218894/1-779 PPPIKLPSSS GNSSSGNYFT PQQTSSFLKS PTPPPSSKPS SIPRKSSVDL 601 650 ENSTTRP00000007482/1-775 NQVSMLSPAA LSPASSSQR- ---------- ---------- ---------- ENSBTAP00000015749/1-740 NQVSMLSPAA LSPASSSQR- ---------- ---------- ---------- bmy_03060T0/1-994 SQVSMLSPAA LSPASSSQTG SGTPKPSTPT PTPSSTPHPP DAQSSTPITP ENSP00000218894/1-779 NQVSMLSPAA LSPASSSQR- ---------- ---------- ---------- 651 700 ENSTTRP00000007482/1-775 ---------- ---------- ---------- ---------- ---------T ENSBTAP00000015749/1-740 ---------- ---------- ---------- ---------- ---------T bmy_03060T0/1-994 SATPTPQDSG FTPQPTLLTQ FAQQQRSLSQ AMPVTTIPLS TMVTSITTGT ENSP00000218894/1-779 ---------- ---------- ---------- ---------- ---------T 701 750 ENSTTRP00000007482/1-775 TATQVMANSA GLNFINVVGS VCGAQALMSG SNPMLGCNTG AITPAGINLS ENSBTAP00000015749/1-740 TATQVMANSA GLNFINVVGS VCGAQALMSG SNPMLGCNTG AITPAGVNLS bmy_03060T0/1-994 TATQVMANSA GLNFINVVGS VCGAQALMSG SNPMLGCNTG AITPAGINLS ENSP00000218894/1-779 TATQVMANSA GLNFINVVGS VCGAQALMSG SNPMLGCNTG AITPAGINLS 751 800 ENSTTRP00000007482/1-775 GLLPSGGLLP NALPSAMQAA SQAGVPFGLK NTSSL--LNL LQLPGGSLIF ENSBTAP00000015749/1-740 GLLPSGGLLP NALPGAMQTA SQAGVPFGLK NTSSLRPLNL LQLPGGSLIF bmy_03060T0/1-994 GLLPSGGLLP NALPSAMQAA SQAGVPFGLK NTSSLRPLNL LQLPGGSLIF ENSP00000218894/1-779 GLLPSGGLLP NALPSAMQAA SQAGVPFGLK NTSSLRPLNL LQLPGGSLIF 801 850 ENSTTRP00000007482/1-775 NTL-----QQ QQQLSQFTPQ Q---PQQPTT SVPQQPGEQA SEQSCTSQEQ ENSBTAP00000015749/1-740 NTLQQQQQQQ QQQLSQFTPQ QPQQPQQPTT SSPQQPGEQG SEQSLTSQEQ bmy_03060T0/1-994 NTL-----QQ QQQLSQFTPQ Q---PQQPTT SSPQQPGEQG SEQSGTSQEQ ENSP00000218894/1-779 NTL----QQQ QQQLSQFTPQ Q---PQQPTT CSPQQPGEQG SEQGSTSQEQ 851 900 ENSTTRP00000007482/1-775 ALSAQHTAVI NLAGVGSYMQ SQAAVLSQLG SAENRPEQSL PQQRFQLSSA ENSBTAP00000015749/1-740 ALSAQHAAVI NLAGVGSFMH SQAAAVTILA ASNGYGSSSS TNSSATSSSA bmy_03060T0/1-994 ALSAQHTAVS NLAGVGSYMQ SQAAVLSQLG SAENRPEQSL PQQRFQLSSA ENSP00000218894/1-779 ALSAQQAAVI NLTGVGSFMQ SQAAVLSQLG SAENRPEQSL PQQRFQLSSA 901 950 ENSTTRP00000007482/1-775 FQQQQQQI-- ---------- ---------- ---------- ---------- ENSBTAP00000015749/1-740 YRQPVKK--- ---------- ---------- ---------- ---------- bmy_03060T0/1-994 FQQQQQQIQV IQQLHSGYIF KDTLLQNFIV FITLRKSIFP HLPTLNLTWF ENSP00000218894/1-779 FQQQQQQI-- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000007482/1-775 -----QQLRF LQHQMAMAAA AAAQTAQLHR HRHTGSQSKS KMKRGTPTTP ENSBTAP00000015749/1-740 ---------- ---------- ---------- ---------- ---------- bmy_03060T0/1-994 LPSALQQLRF LQHQMAMAAA AAAQTAQLHR HRHTGSQSRS KTKRGTPTTP ENSP00000218894/1-779 -----QQLRF LQHQMAM-AA AAAQTAQLHH HRHTGSQSKS KMKRGTPTTP 1001 1050 ENSTTRP00000007482/1-775 KF ENSBTAP00000015749/1-740 -- bmy_03060T0/1-994 KF ENSP00000218894/1-779 KF