KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:56:56 2014 Check: 00 .. Name: ENSP00000383333/1-939 Len: 961 Check: 3687 Weight: 1.00 Name: ENSTTRP00000015736/1-937 Len: 961 Check: 4781 Weight: 1.00 Name: ENSBTAP00000015758/1-960 Len: 961 Check: 6969 Weight: 1.00 Name: bmy_08870T0/1-789 Len: 961 Check: 9319 Weight: 1.00 // 1 50 ENSP00000383333/1-939 ---------- MAAQPPRGIR LSALCPKFLH TNSTSHTWPF SAVAELIDNA ENSTTRP00000015736/1-937 ---------- MAAQPPSGIR LSALCPKFLH TNSTSHTWPF SAVAELIDNA ENSBTAP00000015758/1-960 GRSWLCNSLK MATQPPSGIR LSALCPKFLH TNSTSHTWPF SAVAELIDNA bmy_08870T0/1-789 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000383333/1-939 YDPDVNAKQI WIDKTVINDH ICLTFTDNGN GMTSDKLHKM LSFGFSDKVT ENSTTRP00000015736/1-937 YDPDVNAKQI WIDKTVINDH ICLTFTDNGN GMTSDKLHKM LXXXXXXXXX ENSBTAP00000015758/1-960 YDPDVNAKQI WIDKTVINDC ICLTFTDNGN GMTSDKLHKM LSFGFSEKVT bmy_08870T0/1-789 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000383333/1-939 MNGHVPVGLY GNGFKSGSMR LGKDAIVFTK NGESMSVGLL SQTYLEVIKA ENSTTRP00000015736/1-937 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXEVIAE ENSBTAP00000015758/1-960 MNDHVPVGLY GNGFKSGSMR LGKDAMVFTK NEESMSVGFL SQTYLEVIKA bmy_08870T0/1-789 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000383333/1-939 EHVVVPIVAF --NKHRQMIN LAESKASLAA ILEHSLFSTE QKLLAELDAI ENSTTRP00000015736/1-937 H--VVPIVAF N-KDQRQIIN LTESKASLAA ILEHSLFSTE QKLLAELDAV ENSBTAP00000015758/1-960 EHVVVPIVSF NKQDIRQVLD STESKASLAA ILEHSLFSKE QQLLAELDAI bmy_08870T0/1-789 ---------- --MDIRQIIN LTESKASLAA ILEHSLFSTE QKLLAELDAI 201 250 ENSP00000383333/1-939 IGKKGTRIII WNLRSYKNAT EFDFEKDKYD IRIPEDLDEI TGKKGYKKQE ENSTTRP00000015736/1-937 IGKKGTRIII WNLRSYKSAT EFDFDKDKYD IRIPEDLDET AGKKGYKKQE ENSBTAP00000015758/1-960 IGKKGTRIII WNLRSYKSAT EFDFDKDKYD IRIPEDLDET AGKKGYKKQE bmy_08870T0/1-789 MGKKGTRIII WNLRSYKSAT EFDFDKDKYD IRIPEDLDET AGKKGYKKQE 251 300 ENSP00000383333/1-939 RMDQIAPESD YSLRAYCSIL YLKPRMQIIL RGQKVKTQLV SKSLAYIERD ENSTTRP00000015736/1-937 RMDQIAPESD YSLRAYCSIL YLKPRMQIIL RGQKVKTQLV SKSLAYIERD ENSBTAP00000015758/1-960 RMDQIAPESD YSLRAYCSIL YLKPRMQIIL RGQKVKTQLV SKSLAYIERD bmy_08870T0/1-789 RMDQIAPESD YSLRAYCSIL YLKPRMQIIL RGQKVKTQLV SKSLAYIERD 301 350 ENSP00000383333/1-939 VYRPKFLS-K TVRITFGFNC RNKDHYGIMM YHRNRLIKAY EKVGCQLRAN ENSTTRP00000015736/1-937 IYRPKFLX-X XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAN ENSBTAP00000015758/1-960 IYRPKFLTNK TVRITFGFNC RNKDHYGIMM YHRNRLIKAY EKVGCQLRAN bmy_08870T0/1-789 IYRPKFLTNK TVRITFGFNC RNKDHYGIMM YHRNRLIKAY EKVGCQLRAN 351 400 ENSP00000383333/1-939 NMGVGVVGII ECNFLKPTHN KQDFDYTNEY RLTITALGEK LNDYWNEMKV ENSTTRP00000015736/1-937 NMGVGVVGII DCYFLKPTHN KQDFDYTNEY RLTITALGDK LNDYWNEMKV ENSBTAP00000015758/1-960 NMGVGVVGII DCYFLKPTHN KQDFDYTNEY RLTITALGDK LNDYWNEMKV bmy_08870T0/1-789 NMGVGVVGII DCYFLKPTHN KQDFDYTNEY RLTITALGDK LNDYWNEMKV 401 450 ENSP00000383333/1-939 KKNTEYPLNL PVEDIQKRPD QTWVQCDACL KWRKLPDGMD QLPEKWYCSN ENSTTRP00000015736/1-937 KKNAEYPLTL LVEDIQKRPD QTWVQCDSCL KWRKLPDGID QLPEKWYCSN ENSBTAP00000015758/1-960 KKHAEYPLNL PVEDIQKRPD QTWVQCDSCL KWRKLPDGID QLPEKWYCSN bmy_08870T0/1-789 KKNAEYPLTS LVEDIQKRPD QTWVQCDSCL KWRKLPDGID QLPEKWYCSN 451 500 ENSP00000383333/1-939 NPDPQFRNCE VPEEPEDEDL VHPTYEKTYK KTNKEKFRIR QPEMIPRIN- ENSTTRP00000015736/1-937 NPDPQFRNCD VPEEPEDEDL VHPTYEKTYK KXXXXXXXXX XXXXXXXIP- ENSBTAP00000015758/1-960 NPDPQFRNCD VPEEPEDEDV VHPTYEKTYK KKDREKFRIR QLETAPRISF bmy_08870T0/1-789 NPDPQFRNCD VPEEPEDEDL VHPTYEKTYK KKDKEKFRIR QPEAIPRIP- 501 550 ENSP00000383333/1-939 -------AEL LFRPTALSTP SFSSPKESVP RRHLSEGTNS YATRLLNNHQ ENSTTRP00000015736/1-937 -------AEL LFPTTPVSSQ SFPPVKENVP RAHLSEAANT YATRLINNHR ENSBTAP00000015758/1-960 FFLQQIHAEL LFPKTPVSSQ TFTPVKEGVP RGHLSEVANT YSTRLINHHR bmy_08870T0/1-789 -------AEL LFPTTPVSSQ SFPPIKENVP RGHLSEAANT YATRLINNHR 551 600 ENSP00000383333/1-939 VPPQSEPESN SLKRRLSTRS SILNAKNRRL SSQ-FENSVY KGDDDDEDVI ENSTTRP00000015736/1-937 GSPQSEPENN SLKRRLSTRS SILNAKNRRL SNPAFENS-Y KDDDDDEDVI ENSBTAP00000015758/1-960 GSPQSEPENN SLKRRLPTRS SILNAKNRRL SNQVFENS-H QDDDDDEDVI bmy_08870T0/1-789 GSPQSEPENN SLKRRLSTRS SILNAKNRRL SNPAFENS-Y KDDDDDEDVI 601 650 ENSP00000383333/1-939 ILEENSTPKP AVDHDIDMKS EQSHVEQGGV QVEFVGDSEP CGQTGSTSTS ENSTTRP00000015736/1-937 ILEENSTPKP AVDDDIEVKL QQSHMEQSGV QVEPVGDNEP CGQTSSTGTS ENSBTAP00000015758/1-960 ILEENSTPKP AGDDDTEVKL QQSPMEQSGV EVEPVGDSEP CGQTGSTGTS bmy_08870T0/1-789 ILEENSTPKP AVDDDIEVKL QQSHMEQSGV QVEPMGDNEP CGQTSSTGTS 651 700 ENSP00000383333/1-939 SSRCDQGNTA ATQTEVPSLV VKKEETVEDE IDVRNDAVIL PSCVEAEAKI ENSTTRP00000015736/1-937 SSRCNQGTTA ATQTEVPSLV VKKEETIEDE IDVRNDTAIL PSCVETEGKI ENSBTAP00000015758/1-960 TSQCDQGTTT ATQTEVPSLV VKKEETVEDA IDVRNDTAAL PACVETEGKT bmy_08870T0/1-789 SSRCNQGTTA ATQTEVPSLV VKKEETIEDE IDVRNDTAIL PSCVETEGKT 701 750 ENSP00000383333/1-939 HETQETTDKS ADDAGCQLQE LRNQLLLVTE EKENYKRQCH MFTDQIKVLQ ENSTTRP00000015736/1-937 RETQEIFDKS AGDAGCQLNE LRNELLLVTQ EKENYKRQCH VFTDQIKVLQ ENSBTAP00000015758/1-960 HETQGTFDKS ASDASCKLNE LRNELLLVTQ EKENYKRQCH MFTEQINVLQ bmy_08870T0/1-789 HETQEIFDKS AGDAGCQLNE VRNELLLVTQ EKENYKRQCH MFTDQIKVLQ 751 800 ENSP00000383333/1-939 QRILEMNDKY VKKETCHQST ETDAVFLLES INGKSESPDH MVSQYQQALE ENSTTRP00000015736/1-937 QRILEMNDKY VKKETCHQST ETDAVCLLES INGKSESPDH MVSQYRQALE ENSBTAP00000015758/1-960 QRILEMNNKY VKKETCHQST ETDAVFLLES INGKPESPDH VVSQYRQALE bmy_08870T0/1-789 QRILEMNDKY VKKETCHQST ETDAVFLLES INGKSESPDH MVSQYRQALE 801 850 ENSP00000383333/1-939 EIERLKKQCS ALQHVKAECS QCSNNESKSE MDEMAVQLDD VFRQLDKCSI ENSTTRP00000015736/1-937 EIERLKKQCS ALQHVKAECS QCSNSESKSE VDEMVVQLDD VFRQLDKCSI ENSBTAP00000015758/1-960 EIERLKKQCS ALQHVKAECS QCSSSESKSE VDEMVVQLDD VFRQLDKCSV bmy_08870T0/1-789 EIERLKKQCS ALQHVKAECS QCSNSESKSE MDEMVVQLDD VFRQLDKCSV 851 900 ENSP00000383333/1-939 ERDQYKSEVE LLEMEKSQIR SQCEELKTEV EQLKSTNQQT ATDVSTSSNI ENSTTRP00000015736/1-937 ERDQYKSEVE LLEMEKSQIR LQCEELKTEI EQLKSTSRQI G-DVSTSSNI ENSBTAP00000015758/1-960 ERDQYKSEIE LLEVEKSQIR SQCEELKAEI EQLKSASGQV GADVSTSSNI bmy_08870T0/1-789 ERDQYKSEVE LLEMEKSQIR LQCEELKTEI EQLKSTSRQI G-DVSTSSNI 901 950 ENSP00000383333/1-939 EESVNHMDGE SLKLRSLRVN VGQLLAMIVP DLDLQQVNYD VDVVDEILGQ ENSTTRP00000015736/1-937 EESVNYTDGE SLKLRSLRVN VGQLLAMIVP DLDLQQVNYD VDVVDEILGQ ENSBTAP00000015758/1-960 EESVNYTDGE SLKLRSLRVN VGQLLAMIVP DLDLQQVNYD VDVVDEILGQ bmy_08870T0/1-789 EESVNYTDGE SLKLRSLRVN VGQLLAMIVP DLDLQQVNYD VDVVDEILGQ 951 1000 ENSP00000383333/1-939 VVEQMSEISS T ENSTTRP00000015736/1-937 VVEQMSEISS T ENSBTAP00000015758/1-960 VVEQMSEISS T bmy_08870T0/1-789 VVEQMSEISS T