KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:57 2014 Check: 00 .. Name: ENSP00000223398/1-1046 Len: 1390 Check: 3456 Weight: 1.00 Name: ENSBTAP00000015759/1-1047 Len: 1390 Check: 5003 Weight: 1.00 Name: BACU012009/1-1073 Len: 1390 Check: 9607 Weight: 1.00 Name: bmy_00384T0/1-1234 Len: 1390 Check: 7164 Weight: 1.00 Name: ENSTTRP00000008321/1-1046 Len: 1390 Check: 6043 Weight: 1.00 // 1 50 ENSP00000223398/1-1046 MQKPSGLKPP GRGGKHSSPM GRTSTGSASS SAAVAAS-SK EGSPLHKQSS ENSBTAP00000015759/1-1047 MQKPSGLKPP GRGGKHSSPM GRTSTGSASA STTVAPTGSK EGSPLHKQAS BACU012009/1-1073 ---------- ---------- ---------- ---------- ---------- bmy_00384T0/1-1234 ---------- ---------- ---------- ---------- --SPLHKQAS ENSTTRP00000008321/1-1046 MQKPSGLKPP GRGGKHSSPM GRTSTGSTSA SATVTATGSK EGSPLHKQAS 51 100 ENSP00000223398/1-1046 GPSSSPAAAA APEKPGPKAA EVGDDFLGDF VVGERVWVNG VKPGVVQYLG ENSBTAP00000015759/1-1047 GPPA--AAPA APEKPGAKAA EVGDEFAGDF VVGERVWVNG VKPGVVQYLG BACU012009/1-1073 ---------- ---------- ------MGDF VVGERVWVNG VKPGVVQYLG bmy_00384T0/1-1234 GSPA--AAPA APEKPGAKAA EVGDEFVGDF VVGERVWVNG VKPGVVQYLG ENSTTRP00000008321/1-1046 GPPA--AAPA APEKPGAKAA EVGDEFVGDF VVGERVWVNG VKPGVVQYLG 101 150 ENSP00000223398/1-1046 ETQFAPGQWA GVVLDDPVGK NDGAVGGVRY FECPALQGIF TRPSKLTRQP ENSBTAP00000015759/1-1047 ETQFAPGQWA GVVLDEPVGK NDGAVGGVRY FECPALQGIF TRPSKLTRQP BACU012009/1-1073 ETQFAPGQWA GVVLDEPVGK NDGAVGGVRY FECPALQGIF TRPSKLTRQP bmy_00384T0/1-1234 ETQFAPGQWA GVVLDEPVGK NDGAVGGVRY FECPALQGIF TRPSKLTRQP ENSTTRP00000008321/1-1046 ETQFAPGQWA GVVLDEPVGK NDGAVGGVRY FECPALQGIF TRPSKLTRQP 151 200 ENSP00000223398/1-1046 TAEGSGSDAH SVESLTAQNL SLHSGTATPP LTSRVIPLRE SVLNSSVKTG ENSBTAP00000015759/1-1047 AAEGSGSDAH SVESLTAQNL SLHSGTATPP LTSRVIPLRE SVLNSSVKTG BACU012009/1-1073 AAEGSGSDTH SVESLTTQNL SLHSGTATPP LTSRVIPLRE SVLNSSVKTG bmy_00384T0/1-1234 AAEGSGSDAH SVESLTTQNL SLHSGTATPP LTSRVIPLRE SVLNSSVKTG ENSTTRP00000008321/1-1046 AAEGSGSDAH SVESLTTQNL SLHSGTATPP LTSRVIPLRE SVLNSSVKTG 201 250 ENSP00000223398/1-1046 NESGSNLSDS GSVKRGEKDL RLGDRVLVGG TKTGVVRYVG ETDFAKGEWC ENSBTAP00000015759/1-1047 NESGSNLSDS GSVKRGDKDL RLGDRVLVGG TKTGVVRYVG ETDFAKGEWC BACU012009/1-1073 NESGSNLSDS GSVKRGDKDL RLGDRVLVGG TKTGVVRYVG ETDFAKGEWC bmy_00384T0/1-1234 NESGSNLSDS GSVKRGDKDL RLGDRVLVGG TKTGVVRYVG ETDFAKGEWC ENSTTRP00000008321/1-1046 NESGSNLSDS GSVKRGDKDL RLGDRVLVGG TKTGVVRYVG ETDFAKGEWC 251 300 ENSP00000223398/1-1046 GVELDEPLGK NDGAVAGTRY FQCPPKFGLF APIHKVIRIG FPSTSPAKAK ENSBTAP00000015759/1-1047 GVELDEPLGK NDGAVAGTRY FQCPPKFGLF APIHKVIRIG FPSTSPAKAK BACU012009/1-1073 GVELDEPLGK NDGAVAGTRY FQCPPKFGLF APIHKVIRIG FPSTSPAKAK bmy_00384T0/1-1234 GVELDEPLGK NDGAVAGTRY FQCPPKFGLF APIHKVIRIG FPSTSPAKAK ENSTTRP00000008321/1-1046 GVELDEPLGK NDGAVAGTRY FQCPPKFGLF APIHKVIRIG FPSTSPAKAK 301 350 ENSP00000223398/1-1046 KTKRMAMGVS ALTHSPSSSS ISSVSSVASS VGGRPSRSGL LTETSSRYAR ENSBTAP00000015759/1-1047 KTKRMAMGVS ALTHSPSSSS ISSVSSVASS VGGRPSRSGL LTETSSRYAR BACU012009/1-1073 KTKRMAMGVS ALTHSPSSSS ISSVSSVASS VGGRPSRSGL LTETSSRYAR bmy_00384T0/1-1234 KTKRMAMGVS ALTHSPSSSS ISSVSSVASS VGGRPSRSGL LTETSSRYAR ENSTTRP00000008321/1-1046 KTKRMAMGVS ALTHSPSSSS ISSVSSVASS VGGRPSRSGL LTETSSRYAR 351 400 ENSP00000223398/1-1046 KISGTTALQE ALKEKQQHIE QLLAERDLER AEVAKATSHI CEVEKEIALL ENSBTAP00000015759/1-1047 KISGTTALQE ALKEKQQHIE QLLAERDLER AEVAKATSHI CEVEKEIALL BACU012009/1-1073 KISGTTALQE ALKEKQQHIE QLLAERDLER AEVAKATSHI CEVEKEIALL bmy_00384T0/1-1234 KISGTTALQE ALKEKQQHIE QLLAERDLER AEVAKATSHI CEVEKEIALL ENSTTRP00000008321/1-1046 KISGTTALQE ALKEKQQHIE QLLAERDLER AEVAKATSHI CEVEKEIALL 401 450 ENSP00000223398/1-1046 KAQHEQYVAE AEEKLQRARL LVESVRKEKV DLSNQLEEER RKVEDLQFRV ENSBTAP00000015759/1-1047 KAQHEQYVAE AEEKLQRARL LVESVRKEKV DLSNQLEEER RKVEDLQFRV BACU012009/1-1073 KAQHEQYVAE AEEKLQRARL LVESVRKEKV DLSNQLEEER RKVEDLQFRV bmy_00384T0/1-1234 KAQHEQYVAE AEEKLQRARL LVESVRKEKV DLSNQLEEER RKVEDLQFRV ENSTTRP00000008321/1-1046 KAQHEQYVAE AEEKLQRARL LVESVRKEKV DLSNQLEEER RKVEDLQFRV 451 500 ENSP00000223398/1-1046 EEESITKGDL ETQTQLEHAR IGELEQSLLL EKAQAERLLR ELADNRLTTV ENSBTAP00000015759/1-1047 EEESITKGDL ETQTQLEHAR IGELEQNLLL EKAQAERLLR ELADNRLTTV BACU012009/1-1073 EEESITKGDL ETQTQLEHAR IGELEKNLLL EKAQAERLLR ELADNRLTTV bmy_00384T0/1-1234 EEESITKGDL E--------- ---------- ---------- ------LTTV ENSTTRP00000008321/1-1046 EEESITKGDL EIQTQL-HAR IGELEKHLLL EKAQAERLLR ELADNRLTTV 501 550 ENSP00000223398/1-1046 AEKSRVLQLE EELTLRRGEI EELQQCLL-- ---------- ---------- ENSBTAP00000015759/1-1047 AEKSRVLQLE EELSLRREEI EELQQCLL-- ---------- ---------- BACU012009/1-1073 AEKSRVLQLE EELSLRRGEI EELQQCLLHC GPPPADQPEA GEEELSLRRG bmy_00384T0/1-1234 AEKSRVLQLE EELSLRRGEI EELQQCLL-- ---------- ---------- ENSTTRP00000008321/1-1046 AEKSRVLQLE EELSLRRGEI QELQQCLL-- ---------- ---------- 551 600 ENSP00000223398/1-1046 ---------- HSGPPPPDHP DAAEILRLRE RLLSASKEHQ RESGVLRDKY ENSBTAP00000015759/1-1047 ---------- HSGPPPADHP EAAETLRLRE RLLSASKERQ RESGLLRDKY BACU012009/1-1073 EIEELQQCLL HCGPPPADHP EAAETLRLRE RLLSASKELQ RESGMLRDKY bmy_00384T0/1-1234 ---------- HCGPPPADHP EAAETLRLRE RLLSASKEHQ RESGMLRDKY ENSTTRP00000008321/1-1046 ---------- HSGPPPADHP EAAETLRLRE RLLSASQEHQ RESGLLRDKY 601 650 ENSP00000223398/1-1046 EKALKAYQAE VDKLRAANEK YAQEVAGLKD KVQQATSENM GLMDNWKSKL ENSBTAP00000015759/1-1047 EKALRAYQAE VDKLRAANEK YAQEVVDLKA KVQQATSENM GLMDNWKSKL BACU012009/1-1073 EKALRAYQAE VEKLRAANEK YAQEVADLKA KVQQATSENM GLMDNWKSKL bmy_00384T0/1-1234 EKALRAYQAE VEKLRAANEK YAQEVADLKA KVQQATSENM GLMDNWKSKL ENSTTRP00000008321/1-1046 EKALRAYQAE VEKLRAANEK YAQEVVDLKA KVQQATSENM GLMDNWKSKL 651 700 ENSP00000223398/1-1046 DSLASDHQKS LEDLKATLNS GPGAQQKEIG ELKAVMEGIK MEHQLELGNL ENSBTAP00000015759/1-1047 DSLASDHQKS LEDLKATLNS GPGAQQKEIG ELKAVMEGIK MEHQLELGNL BACU012009/1-1073 DSLALDHQKS LEDLKATLNS SPGAQQKEIG ELKAVMEGIK MEHQLELGNL bmy_00384T0/1-1234 DSLALDHQKS LEDLKATLNS SPGAQQKEIG ELKAVMEGIK MEHQLELGNL ENSTTRP00000008321/1-1046 DSLALDHQKS LEDLKATLNS SPGAQQKEIG ELKAVMEGIK MEHQLELGNL 701 750 ENSP00000223398/1-1046 QAKHDLETAM HVKEKEALRE KLQEAQEELA GLQRHWRAQL EVQASQHRLE ENSBTAP00000015759/1-1047 RAKHDIETAV HVKEKEGLRQ KLQEAQEELA AVQQHWCAQL EVQASQHRLE BACU012009/1-1073 RAKHDLETAM HVKEKEGLRQ KLQEAQEELA GLQQHWRAQL EVQAGQHRLE bmy_00384T0/1-1234 RAKHDLETAM HVKEKEGLRQ KLQEAQEELA GLQQHWRAQL EAQAGQHRLE ENSTTRP00000008321/1-1046 RAKHDIETAM HVKEKEGLRQ KLQEAQEELA GLQQHWRAQL EVQASQHRLE 751 800 ENSP00000223398/1-1046 LQEAQDQRRD AELRVHELEK LDVEYRGQAQ AIEFLKEQIS LAEKKMLDYE ENSBTAP00000015759/1-1047 LQEAQDQCRD AELRVRELEK LDVEYQGQAQ AIEFLKEQIS LAEKKMLDYE BACU012009/1-1073 LQEARDQGRG AELRVRELEK LDVEYRAQAQ AIAFLKEQIS LAEQKMLDYE bmy_00384T0/1-1234 LQEARDQGRG AELRVRELEK LDVEYRAQAQ AIAFLKEQIS LAEQKMLDYE ENSTTRP00000008321/1-1046 LQEAQDRCRD AELRGRELEK LDVEYRGQAQ AIAFLKEQIS LAEKKMLDYE 801 850 ENSP00000223398/1-1046 RLQRAEAQGK QEVESLREKL LVAENRLQAV EALCSSQHTH MIESNDISEE ENSBTAP00000015759/1-1047 LLQRSEAQSK QEAERLQEKL LVTENRLQAV ESLCSAQHTH MIESNDISGE BACU012009/1-1073 LLQRSEAQSK QEAERLREKL LATENRLQAV ESLCSAQHTN MIEPNDISGE bmy_00384T0/1-1234 LLQRSEAQSK QEAERLREKL LATENRLQAV ESLCSAQHTN MIESNDISGE ENSTTRP00000008321/1-1046 LLQRSEAQSK QEADRLREKL LVTENRLQAV ESLCSTQHTN MIESNDISGE 851 900 ENSP00000223398/1-1046 TIRTKETVEG LQDKLNKRDK EVTALTSQTE MLRAQVS--- ---------- ENSBTAP00000015759/1-1047 KIRMKETVEG LQDKLNKRDK EVTALTSQTE MLRAQVS--- ---------- BACU012009/1-1073 KMRMKETVEG LQDKLNKRDK EVTALTSQTE MLRAQNAIGG VHETAPILGN bmy_00384T0/1-1234 KTRMKETMEG LQDKLNKRDK EVTALTSQTE MLRAQVS--- ---------- ENSTTRP00000008321/1-1046 KMRMKETVEG LQDKLNKRDK EVTALTSQTE TLRAQVS--- ---------- 901 950 ENSP00000223398/1-1046 ---------- ---------- ---------- --ALESKCKS GEKKVDALLK ENSBTAP00000015759/1-1047 ---------- ---------- ---------- --ALESKCRS GEKKVDTLQK BACU012009/1-1073 GSHPHSYPVP ITFTWHNWSR QRSVDLRFLR GQALESKCRS GEKKVDTLQK bmy_00384T0/1-1234 ---------- ---------- ---------- --ALESKCRS GEKKVDALQK ENSTTRP00000008321/1-1046 ---------- ---------- ---------- --ALESKCRS GEKKVDALQK 951 1000 ENSP00000223398/1-1046 EKRRLEAELE TVSRKTHDAS GQLVLISQEL LRKERSLNEL RVLLLEANRH ENSBTAP00000015759/1-1047 EKRRLEAELE AVSRKTHDAS GQLVLISQEL LRKERSLNEL RVLLLEANRH BACU012009/1-1073 EKRRLEVELE AMSRKTHDAS GQLVLISQEL LRKERSLNEL RVLLLEANRH bmy_00384T0/1-1234 EKRRLEVELE AMSRKTHDAS GQLVLISQEL LRKERSLNEL RVLLLEANRH ENSTTRP00000008321/1-1046 EKRRLEVELE AVSRKTHDAS GQLVLISQEL LRKERSLNEL RVLLLEANRH 1001 1050 ENSP00000223398/1-1046 SPGPERDLSR EVHKAEWRIK EQKLKDDIRG LREKLTGLDK EKSLSDQRRY ENSBTAP00000015759/1-1047 SPGPERDLSR EVHKAEWRIK EQKLKDDIRG LREKLTGLDK EKSLSDQRRY BACU012009/1-1073 SPGPERDLSR EVHKAEWRIK EQKLKDDIRG LREQLTGLDK EKSLSDQRRY bmy_00384T0/1-1234 SPGPERDLSR EVHKAEWRIK EQKLKDDIRG LREQLTGLDK EKSLSDQRRY ENSTTRP00000008321/1-1046 SPGPERDLSR EVHKAEWRIK EQKLKDDIRG LREQLTGLDK EKSLSDQRRY 1051 1100 ENSP00000223398/1-1046 SLIDRS--SA PELLRLQHQL MSTEDALRDA LDQAQQVEKL MEAMRSCPDK ENSBTAP00000015759/1-1047 SLIDPSSSSA PELLRLQHQL ISTEDALRDA LDQAQQVERL VEAMRSCPDK BACU012009/1-1073 SLIEPSSSSS PELLRLQHQL MSTEDALRDA LDQAQQVERL MEAMRSCPDK bmy_00384T0/1-1234 SLIEPSSSSS PELLRLQHQL MSTEDALRDA LDQAQQVERL MEAMRSCPDK ENSTTRP00000008321/1-1046 SLIEPSSCSS PELLRLQHQL MSTEDALRDA LDQAQQVERL MEAMRGCPEK 1101 1150 ENSP00000223398/1-1046 AQTIGNSGSA NGIHQQDKAQ KQEDKH---- ---------- ---------- ENSBTAP00000015759/1-1047 SQAIGNSGSA NGIHQQDKGH KQEEKH---- ---------- ---------- BACU012009/1-1073 SQATGNSGSA NGIHQQDKAQ IQENSSAQYS EIQRASAKIL SSEAYQTPL- bmy_00384T0/1-1234 SQATGNSGSA NGIHQQDKAQ KQERQENPGH SICRGPGPVG EKQRERTSTD ENSTTRP00000008321/1-1046 SQATGNSGSA NGIHQQDKAH KQEDKH---- ---------- ---------- 1151 1200 ENSP00000223398/1-1046 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015759/1-1047 ---------- ---------- ---------- ---------- ---------- BACU012009/1-1073 ---------- ---------- ---------- ---------- ---------- bmy_00384T0/1-1234 PEGHCGAARS TPEPLQPAPA APPPGRGQDC RFGEENSVTI TYPPPRTIPH ENSTTRP00000008321/1-1046 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000223398/1-1046 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015759/1-1047 ---------- ---------- ---------- ---------- ---------- BACU012009/1-1073 ---------- ---------- ---------- ---------- ---------- bmy_00384T0/1-1234 PDPPAGPGGF LKHDLPQKAV QPRPGPQDLQ PGRPGHPGHP GHPGSFWSWF ENSTTRP00000008321/1-1046 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000223398/1-1046 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015759/1-1047 ---------- ---------- ---------- ---------- ---------- BACU012009/1-1073 ---------- ---------- ---------- ---------- ---------- bmy_00384T0/1-1234 GEAEVIRPGP FPRRSCPEDP LGPLGTSLPS LSSPSSPGSL SEPRAIVPGR ENSTTRP00000008321/1-1046 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000223398/1-1046 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015759/1-1047 ---------- ---------- ---------- ---------- ---------- BACU012009/1-1073 ---------- ---------- ---------- ---------- ---------- bmy_00384T0/1-1234 XXRRAPASPS GTKEGSPALR SQVGDPLFCF QAKAVPRASC PRTEPLSCSG ENSTTRP00000008321/1-1046 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000223398/1-1046 ---------- ---------- ---------- ---------- ENSBTAP00000015759/1-1047 ---------- ---------- ---------- ---------- BACU012009/1-1073 ---------- ---------- ---------- ---------- bmy_00384T0/1-1234 TSSLQPVCPV RPHVQSAGRR GPSFPPGPQH THSSELLAGG ENSTTRP00000008321/1-1046 ---------- ---------- ---------- ----------