KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:00 2014 Check: 00 .. Name: ENSTTRP00000009257/1-1085 Len: 1086 Check: 3933 Weight: 1.00 Name: ENSP00000264663/1-1086 Len: 1086 Check: 7729 Weight: 1.00 Name: ENSBTAP00000015769/1-1086 Len: 1086 Check: 7759 Weight: 1.00 Name: bmy_08128T0/1-627 Len: 1086 Check: 4123 Weight: 1.00 Name: BACU016722/1-1086 Len: 1086 Check: 7251 Weight: 1.00 // 1 50 ENSTTRP00000009257/1-1085 MANLLKTVAT GCSCPFLSNL GSCKVLPRKK DFLRTFHTHQ ALWCKAPVKP ENSP00000264663/1-1086 MANLLKTVVT GCSCPLLSNL GSCKGLRVKK DFLRTFYTHQ ELWCKAPVKP ENSBTAP00000015769/1-1086 MANLLKTVVT GCSCPFLSNL GSCKVLPGKK NFLRTFHTHR ILWCSAPVKP bmy_08128T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU016722/1-1086 MANLLKTAVA GCSCPFLSSL GSCKALPRKK DFLRTFHTHQ ALWCKAPVKP 51 100 ENSTTRP00000009257/1-1085 GIPYKQLTIG VPKEIFQNEK RVALSPAGVQ ALVKQGFNIV VESGAGEASK ENSP00000264663/1-1086 GIPYKQLTVG VPKEIFQNEK RVALSPAGVQ NLVKQGFNVV VESGAGEASK ENSBTAP00000015769/1-1086 GIPYKQLTVG VPKEIFQNEK RVALSPAGVQ ALVKQGFNVV VESGAGEASK bmy_08128T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU016722/1-1086 GIPYKQLTIG VPKEIFQNEK RVALSPAGVQ ALVKQGFNTV VESGAGEASK 101 150 ENSTTRP00000009257/1-1085 FSDDHYRAAG AQIQGAKEVL ASDLVVKVRA PMLNPTLGVH EADLLKTSGT ENSP00000264663/1-1086 FSDDHYRVAG AQIQGAKEVL ASDLVVKVRA PMVNPTLGVH EADLLKTSGT ENSBTAP00000015769/1-1086 FSDDHYRAAG AQIQGAKEVL ASDLVVKVRA PMLNPTLGVH EADLLKTSGT bmy_08128T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU016722/1-1086 FSDDHYRAAG AQIQGVKEVL ASDLVVKVRA PMLNPTLGVH EADLLKTSGT 151 200 ENSTTRP00000009257/1-1085 LISFIYPTQN PDLLNKLSKR KTTVLAMDQV PRVTIAQGYD ALSSMANIAG ENSP00000264663/1-1086 LISFIYPAQN PELLNKLSQR KTTVLAMDQV PRVTIAQGYD ALSSMANIAG ENSBTAP00000015769/1-1086 LISFIYPAQN PDLLNKLSKR KTTVLAMDQV PRVTIAQGYD ALSSMANIAG bmy_08128T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU016722/1-1086 LISFIYPTQN PDLLNKLSKR KTTVLAMDQV PRVTIAQGYD ALSSMANIAG 201 250 ENSTTRP00000009257/1-1085 YKAVVLAANH FGRFFTGQIT AAGKVPPAKI LIVGGGVAGL ASAGAAKSMG ENSP00000264663/1-1086 YKAVVLAANH FGRFFTGQIT AAGKVPPAKI LIVGGGVAGL ASAGAAKSMG ENSBTAP00000015769/1-1086 YKAVVLAANH FGRFFTGQIT AAGKVPPAKI LIVGGGVAGL ASAGAAKSMG bmy_08128T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU016722/1-1086 YKAVVLAANH FGRFFTGQIT AAGKVPPAKI LIVGGGVAGL ASAGAAKSMG 251 300 ENSTTRP00000009257/1-1085 AIVRGFDTRA AALEQFKSLG AEPLEVDLKE SGEGQGGYAK EMSKEFIEAE ENSP00000264663/1-1086 AIVRGFDTRA AALEQFKSLG AEPLEVDLKE SGEGQGGYAK EMSKEFIEAE ENSBTAP00000015769/1-1086 AIVRGFDTRA AALEQFKSLG AEPLEVDLKE SGEGQGGYAK EMSKEFIEAE bmy_08128T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU016722/1-1086 AIVRGFDTRA AALEQFKSLG AEPLEVALKE SGEGQGGYAK EMSKEFIEAE 301 350 ENSTTRP00000009257/1-1085 MKLFAQQCKE VDILISTALI PGKKAPVLFS KEMIESMKEG SVVVDLAAEA ENSP00000264663/1-1086 MKLFAQQCKE VDILISTALI PGKKAPVLFN KEMIESMKEG SVVVDLAAEA ENSBTAP00000015769/1-1086 MKLFAQQCKE VDILISTALI PGKKAPILFN KEMIESMKEG SVVVDLAAEA bmy_08128T0/1-627 ---------- ---------- ---------- --MIESMKEG SVVVDLAAEA BACU016722/1-1086 MKLFAQQCKE VDILISTALI PGKKAPVLFS KEMIESMKEG SVVVDLAAEA 351 400 ENSTTRP00000009257/1-1085 GGNFETTKPG ELYVHKGITH IGYTDLPSRM ATQASTLYSN NITKLLKAIS ENSP00000264663/1-1086 GGNFETTKPG ELYIHKGITH IGYTDLPSRM ATQASTLYSN NITKLLKAIS ENSBTAP00000015769/1-1086 GGNFETTKPG ELYVHKGITH IGYTDLPSRM ATQASTLYSN NITKLLKAIS bmy_08128T0/1-627 GGNFETTKPG ELYVHKGITH IGYTDLPSRM ATQASTLYSN NITKLLKAIS BACU016722/1-1086 GGNFETTKPG ELYVHKGITH IGYTDLPSRM ATQASTLYSN NITKLLKAIS 401 450 ENSTTRP00000009257/1-1085 SDKDNFYFEV KDDFDFGTMG HVIRGTVVMK DGEVIFPAPT PKNIPQGAPV ENSP00000264663/1-1086 PDKDNFYFDV KDDFDFGTMG HVIRGTVVMK DGKVIFPAPT PKNIPQGAPV ENSBTAP00000015769/1-1086 PDKDNFYFEV KDDFDFGTMG HVIRGTVVMK DGQVIFPAPT PKNIPQGAPV bmy_08128T0/1-627 SDKDNFYFEV KDDFDFGTMG HVIRGTVVMK DGEVIFPAPT PKNIPQGAPV BACU016722/1-1086 SDKDNFYFEV KDDFDFGTMG HVIRGTVVMK DGEVIFPAPT PKNIPQGAPV 451 500 ENSTTRP00000009257/1-1085 KQRTVAELEA EKAATVTPFR KTMTSASVYT AGLTGILGLG IAAPNLAFSQ ENSP00000264663/1-1086 KQKTVAELEA EKAATITPFR KTMSTASAYT AGLTGILGLG IAAPNLAFSQ ENSBTAP00000015769/1-1086 KQKTVAELEA EKAATITPFR KTMTSASVYT AGLTGILGLG IAAPNLAFSQ bmy_08128T0/1-627 KQRTVAELEA EKAATVTPFR KTMTSASAYT AGLTGILGLG IAAPNLAFSQ BACU016722/1-1086 KQRTVAELEA EKAATVTPFR KTMTSASAYT AGLTGILGLG IAAPNLAFSQ 501 550 ENSTTRP00000009257/1-1085 MVTTFGLAGI VGYHTVWGVT PALHSPLMSV TNAISGLTAV GGLVLMGGHL ENSP00000264663/1-1086 MVTTFGLAGI VGYHTVWGVT PALHSPLMSV TNAISGLTAV GGLALMGGHL ENSBTAP00000015769/1-1086 MVTTFGLAGI VGYHTVWGVT PALHSPLMSV TNAISGLTAV GGLVLMGGHL bmy_08128T0/1-627 MVTTFGLAGI VGYHTVWGVT PALHSPLMSV TNAISGLTAV GGLVLMGGHL BACU016722/1-1086 MVTTFGLAGI VGYHTVWGVT PALHSPLMSV TNAISGLTAV GGLVLMGGHL 551 600 ENSTTRP00000009257/1-1085 YPSTTSQGLA ALATFISSVN IAGGFLVTQR MLDMFKRPTD PPEHNYLYLL ENSP00000264663/1-1086 YPSTTSQGLA ALAAFISSVN IAGGFLVTQR MLDMFKRPTD PPEYNYLYLL ENSBTAP00000015769/1-1086 YPSTTSQGLA ALATFISSVN IAGGFLVTQR MLDMFKRPTD PPEYNYLYLL bmy_08128T0/1-627 YPSTTSQGLA ALATFISSVN IAGGFLVTQR MLDMFKRPTD PPEYNYLYLL BACU016722/1-1086 YPSTTSQGLA ALAAFISSVN IAGGFLVTQR MLDMFKRPTD PPEYNYLYLL 601 650 ENSTTRP00000009257/1-1085 PAGTFVGGYL AALSSGYNIE QIVYLGSGLC CVGALAGLST QGTARLGNAL ENSP00000264663/1-1086 PAGTFVGGYL AALYSGYNIE QIMYLGSGLC CVGALAGLST QGTARLGNAL ENSBTAP00000015769/1-1086 PAGTFVGGYL ASLYSGYNIE QIMYLGSGLC CVGALAGLST QGTARLGNAL bmy_08128T0/1-627 PAGTFVGGYL AALYSGYNIE QIVYLGSGLC CVGALAGLST QGTARLGNAL BACU016722/1-1086 PAGTFVGGYL AALYSGYNIE QIVYLGSGLC CVGALAGLST QGTARLGNAL 651 700 ENSTTRP00000009257/1-1085 GMIGVAGGLA ATLGGLKPCP ELLAQMSGAM ALGGTIXXXX XXXXXXXXXX ENSP00000264663/1-1086 GMIGVAGGLA ATLGVLKPGP ELLAQMSGAM ALGGTIGLTI AKRIQISDLP ENSBTAP00000015769/1-1086 GMIGVAGGLA ATLGGLKPCP ELLAQMSGAM ALGGTIGLTI AKRIQISDLP bmy_08128T0/1-627 GMIGVAGGLA ATLGGLKPCP ELLAQMSGAM ALGGTIGLTI AKRIQISDLP BACU016722/1-1086 GMIGVAGGLA ATLGGLKPCP ELLAQMSGAM ALGGTIGLTI AKRIQISDLP 701 750 ENSTTRP00000009257/1-1085 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264663/1-1086 QLVAAFHSLV GLAAVLTCIA EYIIEYPHFA TDAAANLTKI VAYLGTYIGG ENSBTAP00000015769/1-1086 QLVAAFHSLV GLAAVLTCIA EYIIEYPHFA TDAAANLTKI VAYLGTYIGG bmy_08128T0/1-627 QLVAAFHSLV GLAAVLTCIA EYIVEYPHFA TDAAANLTKT VAYLGTYIGG BACU016722/1-1086 QLVAAFHSLV GLAAVLTCIA EYIVEYPHFA TDAAANLTKT VAYLGTYIGG 751 800 ENSTTRP00000009257/1-1085 XXXXXXXXXX XXXXXILKSA PLLLPGRHLL NAGLLAASVG GIIPFMMDPS ENSP00000264663/1-1086 VTFSGSLIAY GKLQGLLKSA PLLLPGRHLL NAGLLAASVG GIIPFMVDPS ENSBTAP00000015769/1-1086 VTFSGSLVAY GKLQGILKSA PLLLPGRHLL NAGLLAGSVG GIIPFMMDPS bmy_08128T0/1-627 VTFSGSLVAY GKLQGILKSA PLLLPGRHLL NAGLLAASVG GIIPFMLDPS BACU016722/1-1086 VTFSGSLVAY GKLQGILKSA PLLLPGRHVL NAGLLAASVG GIIPFMLDPS 801 850 ENSTTRP00000009257/1-1085 FTTGITCLGS VSALSAVMXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264663/1-1086 FTTGITCLGS VSALSAVMGV TLTAAIGGAD MPVVITVLNS YSGWALCAEG ENSBTAP00000015769/1-1086 FTTGITCLGS VSALSAVMGV TLTAAIGGAD MPVVITVLNS YSGWALCAEG bmy_08128T0/1-627 FTTGITCLGS VSALSAVMGV TLTAAIGGAD MPVVITVLNS YSGWALCAEG BACU016722/1-1086 FTTGITCLGS VSALSAVMGV TLTAAIGGAD MPVVITVLNS YSGWALCAEG 851 900 ENSTTRP00000009257/1-1085 XXXXXXXXXX XXXXXXXXXX XXXXXXXXAM NRSLANVILG GYGTTSTAGG ENSP00000264663/1-1086 FLLNNNLLTI VGALIGSSGA ILSYIMCVAM NRSLANVILG GYGTTSTAGG ENSBTAP00000015769/1-1086 FLLNNNLLTI VGALIGSSGA ILSYIMCVAM NRSLANVILG GYGTTSTAGG bmy_08128T0/1-627 FLLNNSLLTV VGALIGSSGA ILSYIMCVAM NRSLANVILG GYGTTSTAGG BACU016722/1-1086 FLLNNSLLTV VGALIGSSGA ILSYIMCVAM NRSLANVILG GYGTTSTAGG 901 950 ENSTTRP00000009257/1-1085 KPMEISGTHT EINLDNAIDM IREANSIIIT P-YGLCAAKA QYPIADLVKM ENSP00000264663/1-1086 KPMEISGTHT EINLDNAIDM IREANSIIIT PGYGLCAAKA QYPIADLVKM ENSBTAP00000015769/1-1086 KPMEISGTHT EINLDNAIDM IREANSIIIT PGYGLCAAKA QYPIADLVKM bmy_08128T0/1-627 KPMEISGTHT EINLDNAIDM IREANNIIIT PGYGLCAAKA QYPIADLVKM BACU016722/1-1086 KPMEVSGTHT EINLDNAIDM IREANSIIIT PGYGLCAAKA QYPIADLVKM 951 1000 ENSTTRP00000009257/1-1085 LSEQGKKVRF GIHPVAGRMP GQLNVLLAEA GVPYDIVLEM DEINHDFPDT ENSP00000264663/1-1086 LTEQGKKVRF GIHPVAGRMP GQLNVLLAEA GVPYDIVLEM DEINHDFPDT ENSBTAP00000015769/1-1086 LSEQGKKVRF GIHPVAGRMP GQLNVLLAEA GVPYDIVLEM DEINHDFPDT bmy_08128T0/1-627 LSEQGKKVR- ---------- ---------- ---------- ---------- BACU016722/1-1086 LSEQGKKVRF GIHPVAGRMP GQLNVLLAEA GVPYDIVLEM DEINHDFPDT 1001 1050 ENSTTRP00000009257/1-1085 DLVLVIGAND TVNSAAQEDP NSIIAGMPVL EVWKSKQVIV MKRSLGVGYA ENSP00000264663/1-1086 DLVLVIGAND TVNSAAQEDP NSIIAGMPVL EVWKSKQVIV MKRSLGVGYA ENSBTAP00000015769/1-1086 DLVLVIGAND TVNSAAQEDP NSIIAGMPVL EVWKSKQVIV MKRSLGVGYA bmy_08128T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU016722/1-1086 DLVLVIGAND TVNSAAQEDP NSIIAGMPVL EVWKSKQVIV MKRSLGVGYA 1051 1100 ENSTTRP00000009257/1-1085 AVDNPIFYKP NTAMLLGDAK KTCDALQAKV RESYQK ENSP00000264663/1-1086 AVDNPIFYKP NTAMLLGDAK KTCDALQAKV RESYQK ENSBTAP00000015769/1-1086 AVDNPIFYKP NTAMLLGDAK KTCDALQAKV RESYQK bmy_08128T0/1-627 ---------- ---------- ---------- ------ BACU016722/1-1086 AVDNPIFYKP NTAMLLGDAK KTCDALQAKI RESYQK