KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:57:00 2014 Check: 00 .. Name: ENSBTAP00000015772/1-312 Len: 389 Check: 1387 Weight: 1.00 Name: BACU000348/1-388 Len: 389 Check: 4406 Weight: 1.00 Name: ENSTTRP00000001214/1-312 Len: 389 Check: 1036 Weight: 1.00 Name: bmy_20843T0/1-232 Len: 389 Check: 8355 Weight: 1.00 // 1 50 ENSBTAP00000015772/1-312 MPGDSPSLWE LVEEHVPLPE RPEVKRILGE TTVDLSLELR AE-------- BACU000348/1-388 MPGDSPPLWE LVEEHVPLPE QPEVKRILGE TTVDLSLELR AEVGRGKVGP ENSTTRP00000001214/1-312 MPGDSPPLWE LVEEHVPLPE RPEVKRILGE TTVDLSLELR AE-------- bmy_20843T0/1-232 MPGDSPPLWE LVEEHVPLPE RPEVKRILGE TTVDLSLELR AEVGRGKVGP 51 100 ENSBTAP00000015772/1-312 ---------- ---------- ---------- ---------- ---------- BACU000348/1-388 TPGLSHDLGD FLTSSGSLAL PGNFRALVGS HCPPSPLQFN SALPLTPLAP ENSTTRP00000001214/1-312 ---------- ---------- ---------- ---------- ---------- bmy_20843T0/1-232 TPGLSHDLGD FLTSSGSLAL P--------- ---------- --------AP 101 150 ENSBTAP00000015772/1-312 ---------- --------VV MLRSLLQEAR SSQAPGSRPT SDLSSLLAPP BACU000348/1-388 LPPLTSPRSR KVSQLSLQVV MLRSLLREAR SFQAPSSRRT SDLSSLLAPP ENSTTRP00000001214/1-312 ---------- --------VV VLRSLLREAR SFQAPGSRPT SDLSSLLAPP bmy_20843T0/1-232 LPPLTSPRSR KVSQLFLQVV MLRSLLREAR SFQAPGSRPT SDLSSLLAPP 151 200 ENSBTAP00000015772/1-312 PLVRDLVRQE LRQLLQGLRR KAICEGRDQT QAWVQYSPRV LRFALEEPRR BACU000348/1-388 PLLRDLVRQE LRQLLQGLRR KAICEGRDQT QAWVQYSPGV LRFALEEPRH ENSTTRP00000001214/1-312 PLLRDLVRQE LRQLLQGLRG KAICEGRDQT QAWVQYSPGV LRFALEEPRR bmy_20843T0/1-232 PLLRDLVRQE LRQLLQGLRR KAICEGRDQT QAWVQYSPGV LRFALEEPRR 201 250 ENSBTAP00000015772/1-312 DLPEQEMFQM RAGDPSSCYR DLSVIKDQLN MSHIDQVAGH LRALLEEECR BACU000348/1-388 DLPEQGIFRL RAGEPSSCHR DLSVIKDQLN VSHVDQVAGY LRALLEEECR ENSTTRP00000001214/1-312 DLPEQGIFRL RAGEPSSCHR DLSVIKDQLN VSHVDQVAG- LRALLEEECC bmy_20843T0/1-232 DLPEQGIFRL RAGEP-SCHR DLSVIKDQLN VSHVDQVAGY LRALLEEECR 251 300 ENSBTAP00000015772/1-312 ALEREIPILQ RCLEEEYIGA ARPSKPSLEP TLAELKEQKA AMQQELQSPL BACU000348/1-388 KLKRKIAILQ RHLEEEYTGA PWPSEASLEP TLAELKEQKA AMQQELRAPP ENSTTRP00000001214/1-312 KLKREIAILQ RRLEEEYTGA PWPSEATLEP TLAELQEQKA AMQQELWAPL bmy_20843T0/1-232 KLKREIAILQ ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000015772/1-312 RPSC-VSSSH RPQPLGSSSQ GPGPLFCLHG AAGVWARPLQ CCLPAPPLEH BACU000348/1-388 RPSC-VSPGH RLRPLESSSQ GLGPLPCLRG AAGVWARPLQ CHLPSPPLER ENSTTRP00000001214/1-312 RPSLPSSPGH RLRPLESSSQ GLGPLPCFRG AAGVWARPLQ CHLPSPPLER bmy_20843T0/1-232 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000015772/1-312 CPKPRSLAST CRWGRKIQCS PRKRPASTPM SSAAPQAPT BACU000348/1-388 CPKPQGLAAT CRWGRKLRCS PRKRPASTPM SSVAPQAPT ENSTTRP00000001214/1-312 CPKPQGLAAT CRWGRKLQCS PRKRPASTPM SSVVPQAPA bmy_20843T0/1-232 ---------- ---------- ---------- ---------