KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:01 2014 Check: 00 .. Name: ENSTTRP00000000599/1-515 Len: 624 Check: 2084 Weight: 1.00 Name: ENSP00000328854/1-516 Len: 624 Check: 2799 Weight: 1.00 Name: BACU009024/1-546 Len: 624 Check: 7553 Weight: 1.00 Name: bmy_22163T0/1-514 Len: 624 Check: 6774 Weight: 1.00 Name: ENSBTAP00000015774/1-411 Len: 624 Check: 8317 Weight: 1.00 // 1 50 ENSTTRP00000000599/1-515 MEGEAGPGGA RRALGRLVEA VLANRGKANA VFDILAVLQS EDQEEVHEAV ENSP00000328854/1-516 MEREPGAAGV RRALGRRLEA VLASRSEANA VFDILAVLQS EDQEEIQEAV BACU009024/1-546 MGAFSGSD-- ---------- ---------- --------ES EDREEIQEAV bmy_22163T0/1-514 MEREAGPGGA RRALGRLVEA VLANRGKANA VFDILAVLQS EDREEIQEAV ENSBTAP00000015774/1-411 ---------- ---------- ---------- --------QS EDQEEIQEAV 51 100 ENSTTRP00000000599/1-515 RACSRLFGAL LARGELFVGQ LPSEEMVMAG SRGATRKYRV WMRHRYHSCC ENSP00000328854/1-516 RTCSRLFGAL LERGELFVGQ LPSEEMVMTG SQGATRKYKV WMRHRYHSCC BACU009024/1-546 RACSRLFGAL LARGELFVGQ LPSEEMVMAG SRGATRKYRV WMRHRYHSCC bmy_22163T0/1-514 RACSRLFGAL LARGELFVGQ LPSEEMVMAG SRGATRKYRV WMRHRYHSCC ENSBTAP00000015774/1-411 HACSRLFGAL LARGELFVGQ LPSEEMVLTG SRGATRKYKI WMRHRYQSCC 101 150 ENSTTRP00000000599/1-515 NRLGELLARS SFRIKELVLS TLMKFVQLEG EHPLEKPKWE GNYLFPYQLF ENSP00000328854/1-516 NRLGELLGHP SFQVKELALS ALLKFVQLEG AHPLEKSKWE GNYLFPRELF BACU009024/1-546 NRLGELLARS SFQVKELALS TLMKFVQLEG EHPLEKPKWE GNYLFPHQLF bmy_22163T0/1-514 NRLGELLARS SFQVKELALS TLMKFVQLEG EHPLEKPKWE GNYLFPHQLF ENSBTAP00000015774/1-411 NRLGELLAHP SFQVKELALS TLMKFVQLEG EHPLEKPKWE GNYLFPHQLF 151 200 ENSTTRP00000000599/1-515 KSVVRGLLSP EEDRSLLLCQ FRE-LEHDDI RYHTMQAAAD AVARATDGRP ENSP00000328854/1-516 KLVVGGLLSP EEDQSLLLSQ FREYLDYDDT RYHTMQAAVD AVARVTGQHP BACU009024/1-546 KSVVGGLLSA DEDHSLLLCQ FREYLEHDDI RYHTMQAATD AVARATDGRP bmy_22163T0/1-514 KSVVGGLLSA DEDHSLLLCQ FREYLEHDDI RYHTMQAAAD AVARATDGRP ENSBTAP00000015774/1-411 MLVVGGLLSP EEDRSLLLSQ FREYLEHDDI RYHTMQAASN TVARTTDGRP 201 250 ENSTTRP00000000599/1-515 EVPLAFWNNA FTLLSSVSLP RQESAPPSFY VKHAELSDKW KVVHLR---- ENSP00000328854/1-516 EVPPAFWNNA FTLLSAVSLP RREPTVSSFY VKRAELWDTW KVAHLK---- BACU009024/1-546 E--------- ---------- --ERAPSSFY VKHAELSDKW KVVHLR---- bmy_22163T0/1-514 E--------- ---------- ---------- VSRLGLSHKW KVVHLRALAP ENSBTAP00000015774/1-411 EVPLTFWNNA FMLLSSVSLP RQESTLSSFY VKHTELSDKW KVVHLK---- 251 300 ENSTTRP00000000599/1-515 ---------- ---------- ---EHRKAFQ QMWLGFLKHQ XXXXXXXXXX ENSP00000328854/1-516 ---------- ---------- ---EHRRVFQ AMWLSFLKHK LPLSLYKKVL BACU009024/1-546 ---------- ---------- ---EHRKAFQ QMWLGFLKHQ LPLRICKKVL bmy_22163T0/1-514 YRRQEEGGRI GSVGASTPAA SPQEHRKAFQ QMWLGFLKHQ LPLRICKKVL ENSBTAP00000015774/1-411 ---------- ---------- ---EHRKAFQ QMWLHFLKHQ LPLRVCKKVL 301 350 ENSTTRP00000000599/1-515 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000328854/1-516 LIVHDAILPQ LAQPTLMIDF LTRACDLGGA LSLLALNGLF ILIHKHNLEY BACU009024/1-546 VITHDSVLPH LAQPRLMIDF LARACDLGGA VSLLALNGLF ILIHKHNLEY bmy_22163T0/1-514 VITHDSILPH LAQPSLMIDF LARACDLGGA VSLLALNGLF ILIHKHNLEY ENSBTAP00000015774/1-411 VIMHDSILPH LAQPSLMIDF LTRAYDIGGA VSLLALNGLF ILIHKHNLGV 351 400 ENSTTRP00000000599/1-515 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXHLPAY LVAAFTKRLA ENSP00000328854/1-516 PDFYRKLYGL LDPSVFHVKY RARFFHLADL FLSSSHLPAY LVAAFAKRLA BACU009024/1-546 PDFYRKLYGL LDPSVFHVKY RARFFHLADL FLSSSHLPAY LVAAFTKGLA bmy_22163T0/1-514 PDFYRKLYGL LDPSVFHVKY RARFFHLADL FLSSSHLPAY LVAAFTKRLA ENSBTAP00000015774/1-411 PDFYRKLYGL LDPSVFHVKY RARFFHLADL FLSSSHLPAY LVAAFTKRLA 401 450 ENSTTRP00000000599/1-515 RLALTAPPEA LLTVLPFICN LLRRHPACRV LVHRPRGPEL DADPYDPREE ENSP00000328854/1-516 RLALTAPPEA LLMVLPFICN LLRRHPACRV LVHRPHGPEL DADPYDPGEE BACU009024/1-546 SLALTAPPEA LLTVLPFICN LLRRHPACRV LVHRPRGPEL DADPYDPREE bmy_22163T0/1-514 RLALTAPPEA LLTVLPFICN LLRRHPACRV LVHRPRGPEL DADPYDPREE ENSBTAP00000015774/1-411 RLALTAPPEA LLMVLPFICN LLRRHPACRV LMHRPRGPEL DADPYDPTEE 451 500 ENSTTRP00000000599/1-515 DPARSRALES SLWELQALQQ HYHPEASKAA SAISQALSEA EVSLAPLLEL ENSP00000328854/1-516 DPAQSRALES SLWELQALQR HYHPEVSKAA SVINQALSMP EVSIAPLLEL BACU009024/1-546 DPAQSRALES SLWELQALQR HYHPEVSKAA SAVNQALSEA EVSIAPLLEL bmy_22163T0/1-514 DPAQSRALES SLWELQALQR HYHPEVSKAA GAINRALSEA EASIAPLLEL ENSBTAP00000015774/1-411 DPAQSRALES SLWELQALQQ HYHPEV---- ---------- ---------- 501 550 ENSTTRP00000000599/1-515 TAFQIFEQD- ---------- ---------- ---------- -LQKKGP--- ENSP00000328854/1-516 TAYEIFERD- ---------- ---------- ---------- -LKKKGP--- BACU009024/1-546 TAFQGLSPEC PEFLAAPVGG GEDERQPGRR AVLMVGTGSS LLQPHGPAQK bmy_22163T0/1-514 TAFQIFERD- ---------- ---------- ---------- -LEKKGP--- ENSBTAP00000015774/1-411 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000000599/1-515 ---------- --------EP VPLEFIPAQG LLGRRGDLCA QHFTLS---- ENSP00000328854/1-516 ---------- --------EP VPLEFIPAQG LLGRPGELCA QHFTLS---- BACU009024/1-546 QERACHKDVP VSAGTPGADP TAVASGPRAG HPVKAGSQVR KDTTWSPLNC bmy_22163T0/1-514 ---------- --------EP VPLEFIPARG LLGRRDDLCA QHFTLS---- ENSBTAP00000015774/1-411 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000000599/1-515 ---------- ---------- ---- ENSP00000328854/1-516 ---------- ---------- ---- BACU009024/1-546 NLQGENSTGF DIHHLEARGQ AKLR bmy_22163T0/1-514 ---------- ---------- ---- ENSBTAP00000015774/1-411 ---------- ---------- ----