KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:01 2014 Check: 00 .. Name: ENSP00000229554/1-716 Len: 726 Check: 340 Weight: 1.00 Name: ENSBTAP00000015775/1-722 Len: 726 Check: 5120 Weight: 1.00 Name: ENSTTRP00000010396/1-713 Len: 726 Check: 5120 Weight: 1.00 Name: bmy_06842T0/1-680 Len: 726 Check: 6869 Weight: 1.00 Name: BACU014244/1-680 Len: 726 Check: 8797 Weight: 1.00 // 1 50 ENSP00000229554/1-716 MEDSTSPKQE KENQEELGET RRPWEGKTAA SPQYSEPESS EPLEAKQGPE ENSBTAP00000015775/1-722 MEDSI-PVNQ KIKHQELGET GRPWE-ETVT TSQAPELGLS EALELEQGPE ENSTTRP00000010396/1-713 MEDST-PLKQ KIQHQELGET GRPWE-EMVT ASQDPEPGLS EASESEQGPE bmy_06842T0/1-680 MEDST-PLKQ KIEHQELGET GRPWE-EMVT TSQDSEPGLS EASESEQGPE BACU014244/1-680 MEDST-PLKQ KIEHQELGET GRPWE-EMVT TSQDPEPRLS EASESEQGPV 51 100 ENSP00000229554/1-716 TGRQSRSSRP WSPQSRAKT- --PLGGPAGP ETSSPAPVSP REPSSSPSPL ENSBTAP00000015775/1-722 TGLQPRSSPP TMPLSGARTP DRPVDDLVGL RASFP-SSAF QELPSTLSPL ENSTTRP00000010396/1-713 TGPQPRSSPP GIPQSGAST- --PVDDLVGP GVSSP-PSPS QEPSSTPSPL bmy_06842T0/1-680 TGPQPRSSPP GIPQSGAST- --PVDDLVGP GVSSP-PSPS QEPSSTPSPL BACU014244/1-680 TGPQPRSSPP GIPQSGAST- --PVDDLVGP GVSSP-PSPS QEPSSTPSPL 101 150 ENSP00000229554/1-716 APARQDLAAP PQSDRTTSVI PEAGTPYPDP LEQSSDKRES TPHHTSQSEG ENSBTAP00000015775/1-722 ALARQDFMAP WQSDKTTSVI PEAETPHFGH LEQLSDKGGS TLHQTCQSKG ENSTTRP00000010396/1-713 ALAVQDLMAP WQSDKTTSVI SEAGXXXXXX XXXXXXXXXX XXXXTCQSEG bmy_06842T0/1-680 ALAVQDLMAP WQSDKTTSVI SEAGTPHFDH LEQSSDKGES TPHQTCQSEG BACU014244/1-680 ALAVQDLMAP WQSDKTTSVI SEAGTPHLDH LEQSSDKAES TPHQTCQSEG 151 200 ENSP00000229554/1-716 NTFQQSQQPK PHLCGRRDVS YNNAKQKELR FDVFQEEDSN SDYDLQQPAP ENSBTAP00000015775/1-722 NTFHQSQQTK YPLYELRDVS DHTSKQKELR FDIFQEDDSD SNCHLDQPES ENSTTRP00000010396/1-713 NTFHQSQQTK CHLYGPRDVS YNNSKRKELR FDIFQEEDSN SNYDLDQPES bmy_06842T0/1-680 NTFHQSQQTK CHLYGPRDVS YNNSKRKELR FDIFQEEDSN SNYDLAQPES BACU014244/1-680 NTFHQSQQTK CHLYGPRDVS YNNSKRKELR FDIFQEEDSN SDYDLAQPES 201 250 ENSP00000229554/1-716 GGSEVAPSML EITIQNAKAY LLKTSSNSGF NLYDHLSNML TKILNERPEN ENSBTAP00000015775/1-722 GASQVAPSML EIAIQNTKAY LLKTSSKSGL NLYDHLSEML TKVLDKRPEN ENSTTRP00000010396/1-713 GASEVAPSML EIAIQNAKAY LLKSSSESGL NLYDHLSEML TKVLDKRPEN bmy_06842T0/1-680 GASEVAPSML EIAIQNAKAY LLKSSSKSGL NLYDHLSEML TKVLDKRPEN BACU014244/1-680 GASEVAPSML EIAIQNAKAY LLKSSSKSGL NLYDHLSEML TKVLDKRPEN 251 300 ENSP00000229554/1-716 AVDIFENISQ DVKMAHFSKK FDALQNENEL LPTYEIAEKQ KALFLQGHLE ENSBTAP00000015775/1-722 AVDIIENISQ DVKMEHFSKK LDTLQNENEM LPTYEMAEKQ KTLFLQGNVE ENSTTRP00000010396/1-713 AVDIIENVSQ DVKMEHFSIK LDTLQNENEM LPAYEIAENQ KALFLQGNLE bmy_06842T0/1-680 AVDIIENVSQ DVKMEHFSKK LDTLQNENEM LPTYEIAEKQ KALFLQENLE BACU014244/1-680 AVDIIENVSQ DVKMEHFSKK LDTLQNENEM LPTYETAEEQ KALFLQGNLE 301 350 ENSP00000229554/1-716 GVDQELEDEI AENALPNVME SAFYFEQAGV GLGTDETYRI FLALKQLTDT ENSBTAP00000015775/1-722 GADQELEDEI AEHALPNIME SAFYFEQAGV GLGTDETYRI FLALKQLTDT ENSTTRP00000010396/1-713 GADQEMEDEI AEHSLPNVME SAFYFEQAGV GLGTDETYRI FLALKQLTDT bmy_06842T0/1-680 GADQEMEDEI ---------- ---------- ---------- -----QLTDT BACU014244/1-680 GADQEMEDEI ---------- ---------- ---------- ------LTDT 351 400 ENSP00000229554/1-716 HPIQRCRFWG KILGLEMNYI VAEVEFREGE DEEEVEEEDV AEERDNGESE ENSBTAP00000015775/1-722 HPIQKCRFWG KILGLKMNYI VAEVEFREGE DEEEVEEEDV PEERDNGDSE ENSTTRP00000010396/1-713 HPIQKCRFWG KILGLEMNYI VAEVEFREGE DEEEVEEEDV PEERDNGDNE bmy_06842T0/1-680 HPIQKCRFWG KILGLEMNYI VAEVEFREGE DEEEVEEEDV PEERDNGDSE BACU014244/1-680 HPIQKCRFWG KILGLEMNYI VAEVEFHEGE DEEEVEEEDV PEERDNGDSE 401 450 ENSP00000229554/1-716 AHEDEEDELP KSFYKAPQAI PKEESRTGAN KYVYFVCNEP GRPWVKLPPV ENSBTAP00000015775/1-722 ADEDDEDELP RPFYKAPQAI PKEESRTGAN KYVYFVCNEP GRPWVKLPAV ENSTTRP00000010396/1-713 A---DEDELP RSFYKAPQSI PKEESRTGAN KYVYFVCNEP GRPWVKLPAV bmy_06842T0/1-680 A---DEDELP RSFYKAPQAI PKEESRTGAN KYVYFVCNEP GRPWVKLPAV BACU014244/1-680 A---DEDELP RSFYKAPQAI PKEESRTGAN KYVYFVCNEP GRPWVKLPAV 451 500 ENSP00000229554/1-716 IPAQIVIARK IKKFFTGRLD APIISYPPFP GNESNYLRAQ IARISAGTHV ENSBTAP00000015775/1-722 TPAQIVIARK IKKFFTGRLD TPIISYPPFP GNESNYLRAQ IARISAGTHV ENSTTRP00000010396/1-713 TPAQIVIARK IKKFFTGRLD TPIVSYPPFP GNESNYLRAQ IARISAGTQI bmy_06842T0/1-680 TPAQIVIARK IKKFFTGRLD TPIISYPPFP GNESNYLRAQ IARISAGTHV BACU014244/1-680 TPAQIVIARK IKKFFTGRLD TPIISYPPFP GNESNYLRAQ IARISAGTHV 501 550 ENSP00000229554/1-716 SPLGFYQFGE EEGEEEEEAE GGRNSFEENP DFEGIQVIDL VESLSNWVHH ENSBTAP00000015775/1-722 SPLGFYHFGE EEGEEEEEIE SGRDSFEENP DFEGIQVIDL VESLSNWVHH ENSTTRP00000010396/1-713 SPLGFYHFGE EEGEEEEETE GRRDSFEENP DFEGIQVIDL VDSLSNWVHH bmy_06842T0/1-680 SPLGFYHFGE EE-EEEEETE GRRDSFEENP DFEGIQVIDL VESLSNWVHH BACU014244/1-680 SPLGFYHFGE EE-EEEEETE GRRDSFEENP DFEGIQVIDL VESLSNWVHH 551 600 ENSP00000229554/1-716 VQHILSQGRC NWFNSIQKNE EE------EE EEDEEKDDSD YIEQEVGLPL ENSBTAP00000015775/1-722 VQHILPQGRC NWFNPIQKSE EEEE-EEDEE KEEEKGEEPD DTEQEVGPPL ENSTTRP00000010396/1-713 VQHILPQGRC NWFNPIQKSE EEEA----EE EEEEEGEEPD YIEQEVGPPL bmy_06842T0/1-680 VQHILPQGRC NWFNPIQKSE EEEE-AEEEE EEEEEREEPD YIEQEVGPPL BACU014244/1-680 VQHILPQGRC NWFNPIRKSE EEEEAEEEEE EEEEEREEPD YIEQEVGPPL 601 650 ENSP00000229554/1-716 LTPISEDLEI QNIPPWTTRL SSNLIPQYAI AVLQSNLWPG AYAFSNGKKF ENSBTAP00000015775/1-722 LTPISEDLEI QNTSPWTTRL SSNLIPQYAI AVLRSNLWPG AYAFSNGKKF ENSTTRP00000010396/1-713 LTPISEDLEI QNIPPWTTRL SSNLITQYAI AVLRSNLWTG AYAFSNGKKF bmy_06842T0/1-680 LTPISEDLEI QNIPPWTARL SSNLIPQYAI AVLRSNLWTG AYAFSNGKKF BACU014244/1-680 LTPISEDLEI QNTPPWTARL SSNLIPQYAI AVLRSNLWTG AYAFSNGKKF 651 700 ENSP00000229554/1-716 ENFYIGWGHK YSPDNYTPPV PPPVYQEYPS GPEITEMDDP SVEEEQAFRA ENSBTAP00000015775/1-722 ENFYIGWGHK YSPDSYTPPV PPPVYQEYPS GPEITEMDDP TVEEEQAFRA ENSTTRP00000010396/1-713 ENFYIGWGHK YSPDSYTPPV PPPVYQEYPS GPEITEMDDP SVEEEQAFRA bmy_06842T0/1-680 ENFYIGWGHK YSPDSYTPPV PPPVYQEYPS GPEITEMDDP SVEEEQAFRA BACU014244/1-680 ENFYIGWGHK YSPDSYTPPV PPPVYQEYPS GPEITEMDDP SVEEEQAFRA 701 750 ENSP00000229554/1-716 AQEAVLLAA- ENEESEEDED EEDDYD ENSBTAP00000015775/1-722 AQEAAANSTE ENEETEEEED EEDDYD ENSTTRP00000010396/1-713 AQEAAVNSTE ENEETEEDED EEDDYD bmy_06842T0/1-680 AQEAAVNSTE ENEETEEDED EEDDYD BACU014244/1-680 AQEAAVNSTE ENEETEEDED AEDDYD