KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:57:24 2014 Check: 00 .. Name: ENSBTAP00000015839/1-1337 Len: 1900 Check: 7392 Weight: 1.00 Name: ENSTTRP00000011554/1-951 Len: 1900 Check: 4937 Weight: 1.00 Name: bmy_04379T0/1-1027 Len: 1900 Check: 9441 Weight: 1.00 Name: BACU019912/1-953 Len: 1900 Check: 7222 Weight: 1.00 // 1 50 ENSBTAP00000015839/1-1337 MEWKILPIY- LLLFSVFLIQ QASSQDLSSC AGRCGEGYSR DAICNCDYNC ENSTTRP00000011554/1-951 MERKILPIYF LLLLSVFLIQ QVSSQDLSSC AGRCGEGYSR DAICNCDYNC bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 ---------- ---------- -----DLSSC AGRCGEGYSR DAICNCDYNC 51 100 ENSBTAP00000015839/1-1337 QHYTECCPDF KKECTVELSC KGRCFETFAR GRECDCDSDC KKYGKCCSDY ENSTTRP00000011554/1-951 QHYMECCPDF KKVCAVEFSC KGRCFESFSR GRACDCDSEC KKYGKCCSDY bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 QHYMECCPDF KKVCTVEFSC KGRCFESFTR GRACDCDSEC KKYGKCCFDY 101 150 ENSBTAP00000015839/1-1337 GTFCEAVHNP TTPPPPKTAP PPPGASQTIK STTKRSPKSP NKKKIKKVIE ENSTTRP00000011554/1-951 DSFCEKVHSP ASPPPSKSAP PPPGTTQTII RTKR--PKSS SKKT-KKVEE bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 DSFCEKVHSP ASPPPSKSAP PPPGASQTIK STTKPSPKSS SKKT-KKVIE 151 200 ENSBTAP00000015839/1-1337 SEEITEEHSV SENQESSSSS SSSSSTIRKI KSSKNSAANR ELKKKPKVKD ENSTTRP00000011554/1-951 TFFITEEHSV SENQ----SS SSSSSTFRKI KFSKNS-AAN RLKKKPKAKE bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 SEEITEEHSV SENQE--SSS SSSSSTFRKI KFSKNS-ANR ELKKKPKVKD 201 250 ENSBTAP00000015839/1-1337 -KKKRTPKNK PTPEPPVIDE DGSGLDNGDF KLTPTPNIPT TQRNKVTTTP ENSTTRP00000011554/1-951 NKKKRTPKTK PTPEPPVIDE AGSGPDNGDF KLTPTPNIPT TQRNKFTTTP bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 NKKKRTPKKK PTPEPPVIDE AGNGPDNGDF KLTPTPDIPT IQRNKVTTTP 251 300 ENSBTAP00000015839/1-1337 KITTVKPTLP KPSLPPNSDT TKEIPSTVNR ETTVETKETS TTNKPTSTSA ENSTTRP00000011554/1-951 KITIVKPILS KPSIPPNSDT TKETPLTANK ETTDETKETS TTNKQTSTTA bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 KITIVKPILS KPSIPPNSDT TKETPLTANK ETIDETKETS TTNKHTSTTA 301 350 ENSBTAP00000015839/1-1337 KEKTTSAKET RTAENTSTKG LAPTPEVPAI STPKAETITR SPTPTTPKEP ENSTTRP00000011554/1-951 KEKTTSAKET QNAEKTSTKD FAPTSK---- ---------- ---------- bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 KERTTSAKET QNAEKTSTKD FAPTSE---- ---------- ---------- 351 400 ENSBTAP00000015839/1-1337 APTTKEPALT TTTKEPASTT PKKPAPTTPK ETAPTTPRSP TTKEPEPTTP ENSTTRP00000011554/1-951 ---------- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000015839/1-1337 KQPAPTTPKE PAPTTPKETA PTTKEPAPTT PKEPAPTTPK EPAPTTTKEP ENSTTRP00000011554/1-951 -ESTPITTKE PAPTTTKEQA PT-------T PKELAPTT-K ESTPITTKEP bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 -ESTTTTTKE PAPTTPKEQA PTTKESTPIT TKEPAPTT-K ESTPTTTKEP 451 500 ENSBTAP00000015839/1-1337 APTTPKEPAP TTPKEPEPAP TTPKEPAPTT PKEPTPTTPK EPAPTTPKEP ENSTTRP00000011554/1-951 APTTTKVPAP T--------- -TTKEQAPTT -KESTPINTK EPAPTTTKEQ bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 APTTTKEQAP TT---KESTP ITTKEPAPTT -KESTPTTTK EPAPTTPKEQ 501 550 ENSBTAP00000015839/1-1337 APTTPKEPTP TTPKEPAPTT TPKEPAPTTK EPEPTTKEPA PTTTTKEPAP ENSTTRP00000011554/1-951 ALTT-KESTP ITT------- ---------- ---------- ---------- bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 APTT-KESTP TTTKEQAP-- ---------- ---------- ---------- 551 600 ENSBTAP00000015839/1-1337 TIPKEPAPTT PKEPAPTTHK EPTPTTTPKE PAPTSPKEPA PTSPKEPAPT ENSTTRP00000011554/1-951 ---------- ---------- --------KE PAPTTTKVPA PTTPKEPASA bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 ---------- ---------- -----TTPKE PAPTTTKAPA PTAPKEPASA 601 650 ENSBTAP00000015839/1-1337 SPKEPAPTTT PKEPAPTDPK EPAPAEPKEP APTSSKEPAP TTTTKEPAPT ENSTTRP00000011554/1-951 TPKES----- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 TPKEP----- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000015839/1-1337 TTPKEPAPTD PKEPAPAEPK EPAPTSPKEP APTTTTKEPA PAEPKEPAPT ENSTTRP00000011554/1-951 ---------- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000015839/1-1337 SPKEPAPTTT TKEPAPAEPK EPAPTSPKEP APTTTTKEPA PTTTPKEPAP ENSTTRP00000011554/1-951 ---------- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 ---------- ---------- ---------- ---------- ---------- 751 800 ENSBTAP00000015839/1-1337 TDPKEPAPAE PKEPAPAEPK EPTPNSPETL APSSPDIPAP TTSEASTSTT ENSTTRP00000011554/1-951 ---------- ---------- ---------- TPSSPNTPAP TTSEASPSTI bmy_04379T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU019912/1-953 ---------- ---------- ---------- TPSSPNTPAP TTSEASTSTT 801 850 ENSBTAP00000015839/1-1337 TVEPSTTLKS PAESTPQPPI EPTPKALENS PKEPAVPTIK GPKVNKPEIT ENSTTRP00000011554/1-951 TMEPPTTPKG PVESTPEFPV EPTPKTLENS PKEPAVPTTK APKVTKPEMT bmy_04379T0/1-1027 -MEPPTTPKG PAESPPEFPV EPTPKTLENS PKEPAVPTTK APEVTKPEMT BACU019912/1-953 TMEPPTTPKG PAESSPEFPV EPTPKTLEKS PEEPAVPTTK APKVTKPEMT 851 900 ENSBTAP00000015839/1-1337 TTVKDKSTEK DIYSTPEITT AVAKIITEAA TKTEKTTESK IPSTTTDVTS ENSTTRP00000011554/1-951 TTAKDKATEQ D--------- ---------- ---------- ---------- bmy_04379T0/1-1027 TTAKDKATEK D--------- ---------- ---------- ---------- BACU019912/1-953 TTAKDKATER D--------- ---------- ---------- ---------- 901 950 ENSBTAP00000015839/1-1337 TTTKDTTSSK ITPKA-TLAP KVMTATKKTT EKTKNKPEKT TAVPKGRATN ENSTTRP00000011554/1-951 -TTDTMASSK ITLKATTPAP KVMTATKKTT EETTSKPEPT TAIPKGTATN bmy_04379T0/1-1027 -TTDTXASSK ITLKATTLAP KVMTATKKTT EETTSKPEPT TAIPKGTATN BACU019912/1-953 -TTDTMASSK ITLKATTLAP KVMTATKKTT EETTSKPEPT AAIPKGTATN 951 1000 ENSBTAP00000015839/1-1337 SQVTTPKPQK PTKAPKKPTS TKKPRTPRVR KPKTTPTPPK T----TTSAM ENSTTRP00000011554/1-951 AQVTTPKPQK PT--AKKLTC TKRP-TPYVK --TKTPTPPK MXXXXXXS-- bmy_04379T0/1-1027 SQVTTPKPQK PTKAPKKLTC TKKPKTPKVR KPKTTPTPPK M----TSA-- BACU019912/1-953 SQVTTPKPQK PTKAPKKLTC TKKPKTPRVR KPKTTPTPPK M----TSA-- 1001 1050 ENSBTAP00000015839/1-1337 PEPTPTSLPE AMLQTTTRPT PTPNSEIIDV NPENEDGDAA EGEKPH-MIF ENSTTRP00000011554/1-951 ---NPTSLAE AKLHTTTSPN QTPTSEIIEV NP-NEDADAT EGEKPQMMIP bmy_04379T0/1-1027 ---NPTSLAE AKLQTTTSPN QTPNSEIIEV NTKNEDADAT EGEKPH-MIP BACU019912/1-953 ---NPTSLAE AKLQTTTSPN QTPNTEIIEV SPKNEDADAT EGEKPH-MIP 1051 1100 ENSBTAP00000015839/1-1337 RPPVLTPIVI PGTEIIVRGP SQGFGINPMF SDETNLCNGR PVDGLTTLRN ENSTTRP00000011554/1-951 RPPVLTPIVI PGTDFIGRGP SQGIGINPLF SDETNLCNGK PVDGLTTLRN bmy_04379T0/1-1027 RPPVLTPIVI PGTDFIGRGP SQGIGINPMF SDETNLCNGR PVDGLTALRN BACU019912/1-953 RPPVLTPIVI PGTDFIGRGP SQGIGINPMF SDETNLCNGR PVDGLTALRN 1101 1150 ENSBTAP00000015839/1-1337 GTLVAFRGHY FWMLTPFTPP PPPRRITEVW GIPSPIDTVF TRCNCEGKTF ENSTTRP00000011554/1-951 GTLVAFRGHY FWMLNAFSPP SPPRRITEVW GIPSPIDTVF TRCNCEGKTF bmy_04379T0/1-1027 GTLVAFRGHY FWMLNAFSPP SPPRRITEVW GIPSPIDTVF TRCNCEGKTF BACU019912/1-953 GTLVAFRGHY FWMLNAFSPP SPPRRITEVW GIPSPIDTVF TRCNCEGKTF 1151 1200 ENSBTAP00000015839/1-1337 FFKGSQYWRF TNDIKDAGYP KLISKGFGGL NGKIVAALSI AQYKSRPESV ENSTTRP00000011554/1-951 FFKDSQYWRF TNDIKDAGYP KLISKGFGGL NGKIVAALTI AKYKNRPESV bmy_04379T0/1-1027 FFKDSQYWRF TNDIKDAGYP KLIPKGFGGL NGKIVAALSI AKYKNRPESV BACU019912/1-953 FFKDSQYWRF TNDRKDAGYP KLIPKGFGGL NGKIVAALSI AKYKNRPESV 1201 1250 ENSBTAP00000015839/1-1337 YFFKRGGSVQ QYTYKQEPTQ KCTGRRPAIN YSVYGETAQV RRRRFERAIG ENSTTRP00000011554/1-951 YFFKRGGSIQ QYTYKQEPTQ KCTRRKLAIS YPVYGETTQI RTRRFERAIE bmy_04379T0/1-1027 YFFKRGGSIQ QYTYKQEPTQ KCTRRKLAIN YSVYGETTQV RRRRFERAIE BACU019912/1-953 YFFKRGGSIQ QYTYKQEPTQ KCTRRKLAIN YSVYGETTQV RRRRFERAIE 1251 1300 ENSBTAP00000015839/1-1337 PSQVHTIRIH YTPVRVPYQD KGFLHNEVKV STLWRGLPNV VTSAISLPNI ENSTTRP00000011554/1-951 PSQTHTIRIH YSPIRVTYQD KGFLHNEVKV SILWRGLPNV VTSAISLPNI bmy_04379T0/1-1027 PSQTHTIRIH YSPIRVTYQD K--------- ---------- ---AVSLPNI BACU019912/1-953 TSQTHTIRIH YSPIRVTYQD KGFLHNEVKV STLWRGLPNV VTSAVSLPNI 1301 1350 ENSBTAP00000015839/1-1337 RKPDGYDYYA LSKDQY---- ---------- ---------- -YNI------ ENSTTRP00000011554/1-951 RKPDGYDYYA FSKDQY---- ---------- ---------- -YNI------ bmy_04379T0/1-1027 RKPDGYDYYA FSKGTFNKQK RKPSFLGKSS SSDINGRQIH QYDVAQQELG BACU019912/1-953 RKPDGYDYYA FSKDQY---- ---------- ---------- -YNI------ 1351 1400 ENSBTAP00000015839/1-1337 ---------- ---------- --------DV PSRTARAITT RSGQ------ ENSTTRP00000011554/1-951 ---------- ---------- --------DV PTRTARGITT RSGQ------ bmy_04379T0/1-1027 YLELFYLHHQ KNAAAKKTEN KGISTVSSEI WSDASMVLSS SSSRVRFGKE BACU019912/1-953 ---------- ---------- --------DV TTRTARAITT RSGR------ 1401 1450 ENSBTAP00000015839/1-1337 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011554/1-951 ---------- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 ELGLSAVGAA PPAWFYLEGP DEVVKVQIEA AQSSQRDTLL ETSSYKPRVY BACU019912/1-953 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000015839/1-1337 ---------- ---------- ------TLSN TWYNCP---- ---------- ENSTTRP00000011554/1-951 ---------- ---------- ------TLSN VWYNCP---- ---------- bmy_04379T0/1-1027 HNRFSNMLYT PTTVILLSGL FLPSADALTS FWKPVPWQLV ELQHQQHYPQ BACU019912/1-953 ---------- ---------- ------TLSN VWYNCP---- ---------- 1501 1550 ENSBTAP00000015839/1-1337 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011554/1-951 ---------- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 RIGYLSTGYV INLKRSFQYS LRAALASIAS ADSITGTGVG VETACDVLER BACU019912/1-953 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSBTAP00000015839/1-1337 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011554/1-951 ---------- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 FGVDTRELSS KLEASETLGM EPTFIACSSL TDKLATAFCA RSYSSLSPKA BACU019912/1-953 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSBTAP00000015839/1-1337 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011554/1-951 ---------- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 ADPEFPHKHY TAERRRGITF KLENFISFIS AESQKFISFG LQLCIQPSIL BACU019912/1-953 ---------- ---------- ---------- ---------- ---------- 1651 1700 ENSBTAP00000015839/1-1337 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011554/1-951 ---------- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 IIIFNPLSKN QLPIPHRPPP HQKNLVNQDT QPGSFVSNCE GXSYEKAYGA BACU019912/1-953 ---------- ---------- ---------- ---------- ---------- 1701 1750 ENSBTAP00000015839/1-1337 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011554/1-951 ---------- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 HGAGEAMLAV KPWTGRACKG RRPAIAGVAP RNKGGKSVAL TALHLKFLVP BACU019912/1-953 ---------- ---------- ---------- ---------- ---------- 1751 1800 ENSBTAP00000015839/1-1337 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011554/1-951 ---------- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 PLEAIDLGLL VSKELLKFVL DRLRQLVQFR ALQDLLQHRR HVDRAGDRGG BACU019912/1-953 ---------- ---------- ---------- ---------- ---------- 1801 1850 ENSBTAP00000015839/1-1337 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011554/1-951 ---------- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 SGRRSRNGEE RRRPRGPRSL GCCLRHLARW LARARPTETP TAGPWEIESR BACU019912/1-953 ---------- ---------- ---------- ---------- ---------- 1851 1900 ENSBTAP00000015839/1-1337 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011554/1-951 ---------- ---------- ---------- ---------- ---------- bmy_04379T0/1-1027 VNRCTGRAAA PASAVRAQPP EAVHPGNTSS EAASDPCRAL RFPAPFSTRF BACU019912/1-953 ---------- ---------- ---------- ---------- ----------