KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:32 2014 Check: 00 .. Name: ENSP00000258341/1-1609 Len: 1621 Check: 758 Weight: 1.00 Name: ENSBTAP00000015881/1-1608 Len: 1621 Check: 3880 Weight: 1.00 Name: BACU005803/1-1297 Len: 1621 Check: 8358 Weight: 1.00 Name: bmy_10504T0/1-926 Len: 1621 Check: 2835 Weight: 1.00 Name: ENSTTRP00000007269/1-1595 Len: 1621 Check: 3957 Weight: 1.00 // 1 50 ENSP00000258341/1-1609 MRGSHRAAPA LRPRGRLWPV LAVLAAAAAA GCAQAAMDEC TDEGGRPQRC ENSBTAP00000015881/1-1608 MRGSDRAAAA LRPRGRVWPV LVVL-AAAAA GCARAAMDEC TDEGGRPQRC BACU005803/1-1297 MTSGHR---- ---------- ---------- ---------- ---------- bmy_10504T0/1-926 MKAS------ ---------- ---------- ---------- ---------- ENSTTRP00000007269/1-1595 MRGSKPAAPA LRPRGGLWRV LAVL-AAAAA GCARAAMDEC TDEGGRSQRC 51 100 ENSP00000258341/1-1609 MPEFVNAAFN VTVVATNTCG TPPEEYCVQT GVTGVTKSCH LCDAGQPHLQ ENSBTAP00000015881/1-1608 MPEFVNAAFN VTVVATNTCG TPPEEYCVQT GVTGVTKSCH LCDAGQPHLQ BACU005803/1-1297 ---------- --------CV CPT------- ---------- ---------- bmy_10504T0/1-926 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007269/1-1595 MPEFVNAAFN VTVVATNTCG TPPEEYCVQT GVTGVTKSCH LCDAGQPHLQ 101 150 ENSP00000258341/1-1609 HGAAFLTDYN NQADTTWWQS QTMLAGVQYP SSINLTLHLG KAFDITYVRL ENSBTAP00000015881/1-1608 HGAAFLTDYN NQADTTWWQS QTMLAGVQYP NSINLTLHLG KAFDITYVRL BACU005803/1-1297 ---------- ---------- ---------- ---------G KAFDITYVRL bmy_10504T0/1-926 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007269/1-1595 HGAAFLTDYN NQADTTWWQS QTMLAGVQYP NSINLTLHLG KAFDITYVRL 151 200 ENSP00000258341/1-1609 KFHTSRPESF AIYKRTREDG PWIPYQYYSG SCENTYSKAN RGFIRTGGDE ENSBTAP00000015881/1-1608 KFHTSRPESF AIYKRTREDG PWIPYQYYSG SCENTYSKAT RGFIRTGGDE BACU005803/1-1297 KFHTSRPESF AIYKRTREEG PWVPYQYYSG SCENTYSKAN RGFIRTGGDE bmy_10504T0/1-926 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007269/1-1595 KFHTSRPESF AIYKRTREEG PWVPYQYYSG SCENTYSKAN RGFIRTGGDE 201 250 ENSP00000258341/1-1609 QQALCTDEFS DISPLTGGNV AFSTLEGRPS AYNFDNSPVL QEWVTATDIR ENSBTAP00000015881/1-1608 QQALCTDEFS DISPLTGGNV AFSTLEGRPS AYNFDNSPVL QEWVTATDIR BACU005803/1-1297 QQALCTDEFS DISPLTGGNV AFSTLEGRPS AYNFDNSPVL QEWVTATDIR bmy_10504T0/1-926 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007269/1-1595 QQALCTDEFS DISPLTGGNV AFSTLEGRPS AYNFDNSPVL QEWVTATDIR 251 300 ENSP00000258341/1-1609 VTLNRLNTFG DEVFNDPKVL KSYYYAISDF AVGGRCKCNG HASECMKNEF ENSBTAP00000015881/1-1608 VTLNRLNTFG DEVFNDPKVL KSYYYAISDF AVGGRCKCNG HASECVKNEF BACU005803/1-1297 VTLNRLNTFG DEVFNDPKVL KSYYYAISDF AVGGRCKCNG HASECVKNEF bmy_10504T0/1-926 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007269/1-1595 VTLNRLNTFG DEVFNDPKVL KSYYYAISDF AVGGRCKCNG HASECVKNEF 301 350 ENSP00000258341/1-1609 DKLVCNCKHN TYGVDCEKCL PFFNDRPWRR ATAESASECL PCDCNGRSQE ENSBTAP00000015881/1-1608 DKLVCNCKHN TYGVDCEKCL PFFNDRPWRR ATAESASECQ PCDCNGRSQE BACU005803/1-1297 DKLVCNCKHN TYGVDCEKCL PFFNDRPWRR ATAEGASECL ---------- bmy_10504T0/1-926 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007269/1-1595 DKLVCNCKHN TYGVDCEKCL PFFNDRPWRR ATAESASECL PCDCNGRSQE 351 400 ENSP00000258341/1-1609 CYFDPELYRS TGHGGHCTNC QDNTDGAHCE RCRENFFRLG NNEACSSCHC ENSBTAP00000015881/1-1608 CYFDPELYRS TGHGGHCTNC QDNTDGAKCE RCRENFFRLG NREACSPCHC BACU005803/1-1297 ---------- ---------- ---------- ---------- ---------- bmy_10504T0/1-926 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007269/1-1595 CYFDSELYRS TGHGGHCTNC QDNTDGANCE RCRENFFRLG NREACSACHC 401 450 ENSP00000258341/1-1609 SPVGSLSTQC DSYGRCSCKP GVMGDKCDRC QPGFHSLTEA GCRPCSCDPS ENSBTAP00000015881/1-1608 SPVGSLSTQC DSYGRCSCKP GVMGDKCDRC QPGYHSLTEA GCRPCSCNPS BACU005803/1-1297 ---------- ---------- ---------- ---------- ---------- bmy_10504T0/1-926 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007269/1-1595 SPVGSLSTQC DSYGRCSCKP GVMGDKCDRC QPGYHSLTEA GCRPCSCNPS 451 500 ENSP00000258341/1-1609 GSIDECNIET GRCVCKDNVE GFNCERCKPG FFNLESSNPR GCTPCFCFGH ENSBTAP00000015881/1-1608 GSIDECNIET GRCVCKDNVE GFNCERCKPG FFNLESSNPR GCTPCFCFGH BACU005803/1-1297 ---------- ---------- ---------- ---------- ---------- bmy_10504T0/1-926 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007269/1-1595 GSTDECNFET GRCVCKDNVE GFNCERCKPG FFNLESSNPM GCTPCFCFGH 501 550 ENSP00000258341/1-1609 SSVCTNAVGY SVYSISSTFQ IDEDGWRAEQ RDGSEASLEW SSERQDIAVI ENSBTAP00000015881/1-1608 SSVCTNAVGY SVYSITSTFE TDEDGWRAEQ RDGSEASFEW SSERQDIAVI BACU005803/1-1297 ---------- ---------- -HEDGWRAEQ RDGSEASFEW SSERQDIAVI bmy_10504T0/1-926 ---------- ---------- ---------- ---------- -----SVILF ENSTTRP00000007269/1-1595 SSVCTNAVGY SVYSITSTFQ TDEDGWRVEQ RDGSEASFEW SSERQDIAVI 551 600 ENSP00000258341/1-1609 SDSYFPRYFI APAKFLGKQV LSYGQNLSFS FRVDRRDTRL SAEDLVLEGA ENSBTAP00000015881/1-1608 SDSYFPRYFI APAKFLGKQV LSYGQNFSFS FRVDRRDTRL SAEDLVLEGA BACU005803/1-1297 SDSYFPRYFI APAKFLGKQV LSYGQNFSFS FRVDRRDTRL SAEDLVLEGA bmy_10504T0/1-926 STSY------ ---------- ---------- ---------- ---------- ENSTTRP00000007269/1-1595 SDSYFPRYFI APAKFLGKQV LSYGQNFSFS FRVDRRDT-L FAEPLETARG 601 650 ENSP00000258341/1-1609 GLRVSVPLIA QGNSYPSETT VKYVFRLHEA TDYPWRPALT PFEFQKLLNN ENSBTAP00000015881/1-1608 GMRVSVPLIA QGNSYPSETT VKYVFRLHEA TDYPWRPTLT PFEFQKLLNN BACU005803/1-1297 GLRVSVPLIA QGNSYPSETT VKYVFRLHEA TDYPWRPALT PFEFQKLLNN bmy_10504T0/1-926 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007269/1-1595 SLIVSI---- ----YPSETT KV----LHEA TDYPWRPTLT PFEFQKLLNN 651 700 ENSP00000258341/1-1609 LTSIKIRGTY SERSAGYLDD VTLASARPGP GVPATWVESC TCPVGYGGQF ENSBTAP00000015881/1-1608 LTSIKIRGTY SERSAGYLDD VTLASAHPGP GVPATWVESC TCPVGYGGQF BACU005803/1-1297 LTSIKIRGTY SERNAGYLDD VTLASARPGP GVPATWVESC TCPVGYGGQF bmy_10504T0/1-926 ---------- --TGAGYLDD VTLASARPGP GVPATWVESC TCPVGYGGQF ENSTTRP00000007269/1-1595 LTSIKIRGTY SERSAGYLDD VTLASARPGP GVPATWVESC TCPVGYGGQF 701 750 ENSP00000258341/1-1609 CEMCLSGYRR ETPNLGPYSP CVLCACNGHS ETCDPETGVC NCRDNTAGPH ENSBTAP00000015881/1-1608 CEVCLSGYRR ETPSLGPYSP CVLCTCNGHS ETCDPESGVC NCRDNTAGPN BACU005803/1-1297 CEMCLSGYRR ETPGLGPYSP CVLCTCNGHS ETCDPDTGVC SCRENTAGPH bmy_10504T0/1-926 CEMCLSGYRR ETPSLGPYSP CVLCTCNGHS ETCDPETGVC NCRENTAGPH ENSTTRP00000007269/1-1595 CEMCLSGYRR ETPSLGPYSP CVLCTCNGHS ETCDPETGVC NCRENTAGPH 751 800 ENSP00000258341/1-1609 CEKCSDGYYG DSTAGTSSDC QPCPCPGGSS CAVVPKTKEV VCTNCPTGTT ENSBTAP00000015881/1-1608 CEKCSDGYYG DSTAGTSLDC QPCPCPGGSS CAVVPKTQEV VCTNCPTGTT BACU005803/1-1297 CEKCSDGYYG DSTVGTSSDC QPCPCPGGSS CAVVPKTQEV VCTNCPTGTT bmy_10504T0/1-926 CEKCSDGYYG DSTVGTSSDC QPCPCPGGSS CAVVPKTQEV VCTNCPTGTT ENSTTRP00000007269/1-1595 CEKCSDGYYG DSTVGTSSDC QPCPCPGGSS CAVVPKTQEV VCTNCPTGTT 801 850 ENSP00000258341/1-1609 GKRCELCDDG YFGDPLGRNG PVRLCRLCQC SDNIDPNAVG NCNRLTGECL ENSBTAP00000015881/1-1608 GRRCELCDDG HFGDPLGSNG PVRLCRLCQC NDNIDPNAVG NCNRLTGECL BACU005803/1-1297 GKRCELCDDG YFGDPLGGNG PVRLCRLCQC NDNIDPNAVG NCNRLTGECL bmy_10504T0/1-926 GKRCELCDDG YFGDPLGRNG PVRLCRLCQC NDNIDPNAVG NCNRLTGECL ENSTTRP00000007269/1-1595 GKRCELCDDG YFGDPLGRNG PVRLCRLCQC NDNIDPNAVG NCNRLTGECL 851 900 ENSP00000258341/1-1609 KCIYNTAGFY CDRCKDGFFG NPLAPNPADK CKACNCNLYG TMKQQSSCNP ENSBTAP00000015881/1-1608 KCIYNTAGFY CDRCKDGFFG NPLAPNPADK CRACDCNPYG TVKQQSSCNP BACU005803/1-1297 KCIYNTAGFY CDRCKDGFFG NPLAPSPADK CKACDCNPYG TMKQQSSCNP bmy_10504T0/1-926 KCIYNTAGFY CDRCKDGFFG NPLAPNPADK CKACDCNPYG TVKQQSSCNP ENSTTRP00000007269/1-1595 KCIYNTAGFY CDRCKDGFFG NPLAPNPADK CKACDCNPYG TVKQQSSCNP 901 950 ENSP00000258341/1-1609 VTGQCECLPH VTGQDCGACD PGFYNLQSGQ GCERCDCHAL GSTNGQCDIR ENSBTAP00000015881/1-1608 VTGQCECLPH VTGRDCGACD PGFYNLQSGQ GCERCDCHAL GSTNGQCDVH BACU005803/1-1297 VTGQCECLPH VTGRDCGACD PGFYNLQSGQ GCERCDCHAL GSTNGQCDIH bmy_10504T0/1-926 VTGQCECLPH VTGRDCGACD PGFYNLQSGQ GCERCDCHAL GSTNGQCDIH ENSTTRP00000007269/1-1595 VTGQCECLPH VTGRDCGACD PGFYNLQSGQ GCERCDCHAL GSTNGQCDIH 951 1000 ENSP00000258341/1-1609 TGQCECQPGI TGQHCERCEV NHFGFGPEGC KPCDCHPEGS LSLQCKDDGR ENSBTAP00000015881/1-1608 SGQCECQPGI TGQHCEHCEV NHFGFGPEGC KPCDCHPEGS LSLQCKDDGR BACU005803/1-1297 NGQCECQPGI TGQHCERCEV NHFGFGPEG- ---------- ----CKHDGL bmy_10504T0/1-926 TGQCECQPGI TGQQCERCEV NHFGFGPEGC KPCDCHPEGT LSLQCKDDGL ENSTTRP00000007269/1-1595 TGQCECQPGI TGQHCEHCEV NHFGFGPEGC KPCDCHPEGS LSLQCKDDGL 1001 1050 ENSP00000258341/1-1609 CECREGFVGN RCDQCEENYF YNRSWPGCQE CPACYRLVKD KVADHRVKLQ ENSBTAP00000015881/1-1608 CECREGFVGN RCDQCEENYF YNRSWPGCQE CPACYRLVKD KVADHRAKLR BACU005803/1-1297 CECKEGFVGN RCDQCEENYF YNRSWPGCQE CPACYRLVKD KVADHRAKLQ bmy_10504T0/1-926 CECKEGF--- ---------- ---------- ---------- -VADHRAKLQ ENSTTRP00000007269/1-1595 CACKEGFVGN RCDQCEENYF YNRSWPGCQE CPACYRLVKE KVAEHRAKLQ 1051 1100 ENSP00000258341/1-1609 ELESLIANLG TGDEMVTDQA FEDRLKEAER EVMDLLREAQ DVK------- ENSBTAP00000015881/1-1608 ELENLIANLG TGDEMVTDQA FEDRLKEVER EVTDLLREAQ DVK------- BACU005803/1-1297 ELENLIANLG TGDEMATDQA FEDRLKEAER EVTDLLREAQ DVKDNLWTFF bmy_10504T0/1-926 ELENLVANLG TGDEMVTDQA FEDRLKEAER EVTDLLREAQ DVK------- ENSTTRP00000007269/1-1595 ELENLIANLG TGDEMVTDQA FEDRLKEAER EVTDLLREAQ DVK------- 1101 1150 ENSP00000258341/1-1609 -----DVDQN LMDRLQRVNN TLSSQISRLQ NIRNTIEETG NLAEQARAHV ENSBTAP00000015881/1-1608 -----DVDQN LMDRLQRVNN TLFSQISRLQ NIRNTIEETG NLAEQARSRV BACU005803/1-1297 CTVIADVDQN LMDRLQRVNN TLFSQISRLQ NIRNTIEETG NLAEQACARV bmy_10504T0/1-926 -----DVDQN LMDRLQRVNN TLFSQISRLQ NIRNTIEETG NLAEQACARV ENSTTRP00000007269/1-1595 -----DVDQN LMDRLQRVNN TLFSQISRLQ NIRNTIEETG NLAEQACARV 1151 1200 ENSP00000258341/1-1609 ENTERLIEIA SRELEKAKVA AANVSVTQPE STGDPNNMTL LAEEARKLAE ENSBTAP00000015881/1-1608 ESTEQLIEIA SRELEKAKVA IANVSVTQPE STGDPNNMTL LAEEARKLAE BACU005803/1-1297 ESTEQLIEIA SRELEKAKVA IANVSITQPE STGDPNNMTL LADEARKLAE bmy_10504T0/1-926 ESTEQLIEIA SRELEKAKVA IANVSITQPE STGDPNNMTL LADEARKLAE ENSTTRP00000007269/1-1595 ESTEQLIEIA SRELEKAKVA IANVSITQPE STGDPNNMTL LADEARKLAE 1201 1250 ENSP00000258341/1-1609 RHKQEADDIV RVAKTANDTS TEAYNLLLRT LAGENQTAFE IEELNRKYEQ ENSBTAP00000015881/1-1608 RHKQEADDIV RVAKTANDTS AEAYNLLLRT LAGENQTASE IEELNRKYEQ BACU005803/1-1297 RHKQEADDIV RVAKAANDTS TEAYNLLLRT LAGENQTAVE IEELNRKYEQ bmy_10504T0/1-926 RHKQEADDIV RVAKAANDTS TEAYNLLLRT LAGENQTAFE IEELNRKYEQ ENSTTRP00000007269/1-1595 RHKQEADDIV RVAKAANDTS TEAYNLLLRT LAGENQTAFE IEELNRKYEQ 1251 1300 ENSP00000258341/1-1609 AKNISQDLEK QAARVHEEAK RAGDKAVEIY ASVAQLSPLD SETLENEANN ENSBTAP00000015881/1-1608 AKNISQDLEK QAARVHEEAK KAGDKAVEIY ASVAQLTPVD SEALENEANK BACU005803/1-1297 AKNISQDLEK QAAQVHEEAK KAGEKAVEIY ASVAQLTPVD SEAMENEADK bmy_10504T0/1-926 AKNISQDLEK QAARVHEEAK KAGEKAVEIY ASVAQLTPVD SEAMENEANK ENSTTRP00000007269/1-1595 AKNISQDLEK QAARVHEEAK RAGEKAVEIY ASVAQLTPVD SEAMENEANK 1301 1350 ENSP00000258341/1-1609 IKMEAENLEQ LIDQKLKDYE DLREDMRGKE LEVKNLLEKG KTEQQTADQL ENSBTAP00000015881/1-1608 IKKEAEDLDR LIDQKLKDYE DLRDDMRGKE FEVKKLLEKG KTEQQTADQL BACU005803/1-1297 IKKEAEDLDR LIDQKLKDYE DLRQDMRGKE FEVKNLLEKG KTEQQTADQL bmy_10504T0/1-926 IKKEAEDLDR LIDQKLKDYE DLRQDMRGKE FEVKNLLEKG KTEQQTADQL ENSTTRP00000007269/1-1595 IKKEAEDLDR LIDQKLKDYE DLRQDMRGKE FEVKNLLEKG KTEQQTADQL 1351 1400 ENSP00000258341/1-1609 LARADAAKAL AEEAAKKGRD TLQEANDILN NLKDFDRRVN DNKTAAEEAL ENSBTAP00000015881/1-1608 LARADAAKAL AEEAAEKGRN TLQEANDILN NLKDFDRRVN DNKTAAEEAL BACU005803/1-1297 LARADAAKAL AEEAAKKGRN TLQEANDILS NLKDFDRRVN DNKTAAEEAL bmy_10504T0/1-926 LARADAAKAL AEEAAKKGRN TLQEANDILS NLKDFDRRVN DNKTAAEEAL ENSTTRP00000007269/1-1595 LARADAAKAL AEEAAKKGRN TLQEANDILS NLKDFDRRVN DNKTAAEEAL 1401 1450 ENSP00000258341/1-1609 RKIPAINQTI TEANEKTREA QQALGSAAAD ATEAKNKAHE AERIASAVQK ENSBTAP00000015881/1-1608 RRIPAINQTI IEANEKTREA QQALGNAAAD ATEARNKAHE AERIASAVQK BACU005803/1-1297 RRIPAINQTI MEANEKTREA QLALGNAAAD ATEAKNKAHE AERIASAVQK bmy_10504T0/1-926 RRIPAINQTI IEANEKTREA QLALGNAAAD ATEAKNKAHE AERIASAVQK ENSTTRP00000007269/1-1595 RRIPAINQTI IEANEKTREA QLALGNAAAD ATEAKNKAHE AERIASAVQK 1451 1500 ENSP00000258341/1-1609 NATSTKAEAE RTFAEVTDLD NEVNNMLKQL QEAEKELKRK QDDADQDMMM ENSBTAP00000015881/1-1608 NATSTKAEAE RTFAEVTDLD NEVNNMLKQL QEAEKELKKK QEDADQDMMM BACU005803/1-1297 NATSTKAEAE RTFAEVTDLD NEVNNMLKQL QEAEKELKKK QDDADQDMMM bmy_10504T0/1-926 NATSTKAEAE RTFAEVTDLD NEVNNMLKQL QEAEKELKKK QDDADQDMMM ENSTTRP00000007269/1-1595 NATSTKAEAE RTFAEVTDLD NEVNNMLKQL QEAEKELKKK QDDADQDMMM 1501 1550 ENSP00000258341/1-1609 AGMASQAAQE AEINARKAKN SVTSLLSIIN DLLEQLGQLD TVDLNKLNEI ENSBTAP00000015881/1-1608 AGMASQAAQE AEINARKAKN SVTNLLNLIN DLLEQLGQLD TVDLNKLNEI BACU005803/1-1297 AGMASQAAQE AEINARKAKS SVTSLLNLIN DLLEQLGQLD TVDLNKLNEI bmy_10504T0/1-926 AGMASQAAQE AEINARKAKS SVTSLLNLIN DLLEQLGQLD TVDLNKLNEI ENSTTRP00000007269/1-1595 AGMASQAAQE AEINARKAKN SVTSLLNLIN DLLEQLGQLD TVDLNKLNEI 1551 1600 ENSP00000258341/1-1609 EGTLNKAKDE MKVSDLDRKV SDLENEAKKQ EAAIMDYNRD IEEIMKDIRN ENSBTAP00000015881/1-1608 EGTLNKAKEE MKVSDLDRKV SNLENEARKQ EAAIMDYNRD IEEILKDIRN BACU005803/1-1297 EGTLNKAKDE MKVSDLDRKV SNLENEARRQ EAAIMDYNRD IEEILKDIRN bmy_10504T0/1-926 EGTLNKAKDE MKVSDLDRKV SNLENEARRQ EAAIMDYNRD IEEILKDIRN ENSTTRP00000007269/1-1595 EGTLNKAKDE MKVSDLDRKV SNLENEARRQ EAAIMDYNRD IEEILKDIRN 1601 1650 ENSP00000258341/1-1609 LEDIRKTLPS GCFNTPSIEK P ENSBTAP00000015881/1-1608 LEDIKKTLPS GCFNTPSIEK P BACU005803/1-1297 LEDIRKTLPS GCFNTPSIEK P bmy_10504T0/1-926 LEDIRKTLPS GCFNTPSIEK P ENSTTRP00000007269/1-1595 LEDIKKTLPS GCFNTPSIEK P