KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:33 2014 Check: 00 .. Name: BACU011116/1-646 Len: 773 Check: 155 Weight: 1.00 Name: ENSP00000429633/1-752 Len: 773 Check: 1222 Weight: 1.00 Name: ENSBTAP00000015897/1-687 Len: 773 Check: 6850 Weight: 1.00 Name: bmy_11991T0/1-618 Len: 773 Check: 353 Weight: 1.00 Name: ENSTTRP00000016244/1-743 Len: 773 Check: 3866 Weight: 1.00 // 1 50 BACU011116/1-646 MAKRSRSEDE DDDLQYADHD YEVPQQKGLK KLWNRVKWTR DEDDKLKKLV ENSP00000429633/1-752 MAKRSRSEDE DDDLQYADHD YEVPQQKGLK KLWNRVKWTR DEDDKLKKLV ENSBTAP00000015897/1-687 ---------- ---------- ---------- ---------- ---------- bmy_11991T0/1-618 MAKRSRSEDE DDDLQYADHD YEVPQQKGLK KLWNRVKWTR DEDDKLKKLV ENSTTRP00000016244/1-743 -------EDE DDDLQYADHD YEVPQQKVLK KLWNRVKWTR DEDDKLKKLV 51 100 BACU011116/1-646 EQHGTEDWTL IASHLQ---- ---------- ---------- -------VIE ENSP00000429633/1-752 EQHGTDDWTL IASHLQNRSD FQCQHRWQKV LNPELIKGPW TKEEDQRVIE ENSBTAP00000015897/1-687 ---------- -----QNRSD FQCQHRWQKV LNPELIKGPW TKEEDQRVIE bmy_11991T0/1-618 EQHGTDDWTL IASHLQNRSD FQCQHRWQKV LNPELIKGPW TKEEDQR--- ENSTTRP00000016244/1-743 EQHGTDDWTL IASHLQNRSD FQCQHRWQKV LNPELIKGPW TKEEDQRVIE 101 150 BACU011116/1-646 LVQKYGPKRW SLIAKHLKGR IGKQCRERWH NHLNPE---- ---------- ENSP00000429633/1-752 LVQKYGPKRW SLIAKHLKGR IGKQCRERWH NHLNPEVKKS SWTEEEDRII ENSBTAP00000015897/1-687 LVQKYGPKRW SLIAKHLKGR IGKQCRERWH NHLNPEVKKS SWTEEEDRII bmy_11991T0/1-618 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016244/1-743 LVQKYGPKRW SLIAKHLKGR IGKQCRERWH NHLNPEVKKS SWTEEEDRII 151 200 BACU011116/1-646 ---------- ---------- ---------- ---------- ---------- ENSP00000429633/1-752 YEAHKRLGNR WAEIAKLLPG RTDNSIKNHW NSTMRRKVEQ EGYLQDGIKS ENSBTAP00000015897/1-687 YEAHKRLGNR WAEIAKLLPG RTDNSIKNHW NSTMRRKVEQ EGYLQDGIKS bmy_11991T0/1-618 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016244/1-743 YEAHKRLGNR WAEIAKLLPG RTDNSIKNHW NSTMRRKVEQ EGYLQDGIKS 201 250 BACU011116/1-646 ---------- ---------- ---------I PGYQYVSPGG NCVEHVQPSS ENSP00000429633/1-752 ERSSSKLQHK PCAAMDHMQT QNQFYIPVQI PGYQYVSPEG NCIEHVQPTS ENSBTAP00000015897/1-687 ERSSSKLQHK PCATMDHLQT QNQFYIPVQI PGYQYVSPEG NCVEHVQASS bmy_11991T0/1-618 ---------- ---------- ---------I PGYQYVSPGG NCVEHVQPSS ENSTTRP00000016244/1-743 ERSSSKLQHK PCATMDHLQT QNQFYIPVQI PGYQYVSPGG NCVEHVQPSS 251 300 BACU011116/1-646 AFIQQPFVDE DPDKEKKIKE LELLLMSAEN EVRRKRVPSQ PGSFSSWSGG ENSP00000429633/1-752 AFIQQPFIDE DPDKEKKIKE LEMLLMSAEN EVRRKRIPSQ PGSFSSWSGS ENSBTAP00000015897/1-687 AFIQQPFVDE DPDKEKKIKE LELLLMSAEN EVRRKRVPSQ PGSFSSWPGS bmy_11991T0/1-618 AFIQQPFVDE DPDKEKKIKE LELLLMSAEN EVRRKRVPSQ PGSFSSWSGS ENSTTRP00000016244/1-743 AFIQQPFVDE DPDKEKKIKE LELLLMSAEN EVRRKRVPSQ PGSFSSWSGS 301 350 BACU011116/1-646 FLVDDSMSNT L-SLEEHTSE FYGLDENQAV SAQQNSPTKF LAVEANAVLS ENSP00000429633/1-752 FLMDDNMSNT LNSLDEHTSE FYSMDENQPV SAQQNSPTKF LAVEANAVLS ENSBTAP00000015897/1-687 FLMDDSMSNT LNSLEEHASE FYSMDENQTV SAQQNSPTKF LAVEANAVLS bmy_11991T0/1-618 FLVDDSMSNT L-SLEEHTSE FYGLDENQAV SAQQNSPTKF LAVEANAVLS ENSTTRP00000016244/1-743 FLMDDSMSNT L-SLEEHTSE FYGLDENQAV SAQQNSPTKF LAVEANAVLS 351 400 BACU011116/1-646 SLQTIPEFAE TLELIESDPV AWSDVTSFDL SDAAASPVKS TPVKLMRIQH ENSP00000429633/1-752 SLQTIPEFAE TLELIESDPV AWSDVTSFDI SDAAASPIKS TPVKLMRIQH ENSBTAP00000015897/1-687 SLQTIPEFAE TLELIESDPV AWSDVTSFDL SDAAASPVKS TPVKLMRIQH bmy_11991T0/1-618 SLQTIPEFAE TLELIESDPV AWSDVTSFDL SDAAASPVKS TPVKLMRIQH ENSTTRP00000016244/1-743 SLQTIPEFAE TLELIESDPV AWSDVTSFDL SDAAASPVKS TPVKLMRIQH 401 450 BACU011116/1-646 NEGAMECQFN VSLVLEGKKN SCNGADSEAV PLTSPSVAKF STPPTILRKK ENSP00000429633/1-752 NEGAMECQFN VSLVLEGKKN TCNGGNSEAV PLTSPNIAKF STPPAILRKK ENSBTAP00000015897/1-687 NEGAMECQFN VSLVLEGKRN GCNGADGEAV PLTSPSVPKF STPPTILRKK bmy_11991T0/1-618 NEGAMECQFN VSLVLEGKKN SCNGADSEAV PLTSPSVAKF STPPTILRKK ENSTTRP00000016244/1-743 NEGAMECQFN VSLVLEGKKN SCNSADSEAV PLTSPSVAKF STPPTILRKK 451 500 BACU011116/1-646 RRVRVGQSPG NEPGDGSFND GGNTALKHTP VKTLPFSPSQ FFNTCPGNEQ ENSP00000429633/1-752 RKMRVGHSPG SELRDGSLND GGNMALKHTP LKTLPFSPSQ FFNTCPGNEQ ENSBTAP00000015897/1-687 RRMRVGQSPG SELGDSSFND GGHTALKHTP MKTLPFSPSQ FFNTCPGNEQ bmy_11991T0/1-618 RRMRVGQSSG SEPGDGSFND GGNTALKHTP VKTLPFSPSQ FFNTCPGNEQ ENSTTRP00000016244/1-743 RRMRVGQSPG SNPGDGSFND GGNTALKHTP VKTLPFSPSQ FFNTCPGNEQ 501 550 BACU011116/1-646 INIENPSFTS TPICGQKVLI TTPLHKETTP KDQKENVGFR TPTIRRSILG ENSP00000429633/1-752 LNIENPSFTS TPICGQKALI TTPLHKETTP KDQKENVGFR TPTIRRSILG ENSBTAP00000015897/1-687 INIENPSFTS TPICGQKVLI TTPLHKETTP KDQKENVGFR TPTIRRSILG bmy_11991T0/1-618 INIENPSFTS TPICGQKVLI TTPLHKETTP KDQKENVGFR TPTIRRSILG ENSTTRP00000016244/1-743 INIENPSFTS TPICGQKVLI TTPLHKETTP KDQKENVGFR TPTIRRSILG 551 600 BACU011116/1-646 TTPRTPTPFK NALAAQEKKY GPLKTVSQPL AFLEEDIREV LKEETGTDIF ENSP00000429633/1-752 TTPRTPTPFK NALAAQEKKY GPLKIVSQPL AFLEEDIREV LKEETGTDLF ENSBTAP00000015897/1-687 TTPRTPTPFK NALAAQEKKY GPLKIVSQPL AFLEEDIREV LKEETGTDIF bmy_11991T0/1-618 TTPRTPTPFK NALAAQEKKY GPLKIVSQPL AFLEEDIREV LKEETGTDIF ENSTTRP00000016244/1-743 TTPRTPTPFK NALAAQEKKY GPLKTVSQPL AFLEEDIREV LKEETGTDIF 601 650 BACU011116/1-646 LKEEDEPAYK SCKQEHTASV KKVRKSLVLD NWEKEEPATQ LVTEDLSDMQ ENSP00000429633/1-752 LKEEDEPAYK SCKQENTASG KKVRKSLVLD NWEKEESGTQ LLTEDISDMQ ENSBTAP00000015897/1-687 LKEEDEPAYK SCKQEHTASV KKVRKSLILD NWEKEEPGTQ LLNEDLSDLQ bmy_11991T0/1-618 LKEEDEPPYK SCKQEHTASV KKVRKSLVLD NWEKEEPATQ LVTEDLSDMQ ENSTTRP00000016244/1-743 LKEEDEPAYK SCKQEHTASV KKVRKSLVLD NWEKEEPATQ LVTEDLSGMQ 651 700 BACU011116/1-646 SENIFTTSLL MIPLLEIHDN RCNLTPEKQD KNSTNKTYTL NKKKPNPNTS ENSP00000429633/1-752 SENRFTTSLL MIPLLEIHDN RCNLIPEKQD INSTNKTYTL TKKKPNPNTS ENSBTAP00000015897/1-687 SENIFTTSLL MIPLLEIHDN RCNLTPEKQD INSTNKTYTL NKKKPNPNTS bmy_11991T0/1-618 SENIFTTSLL MIPLLEIHDN RCNLTPEKQD INSTNKTYTL NKKKPNPNTS ENSTTRP00000016244/1-743 SENIFTTSLL MIPLLEIHDN RCNLTPEKQD INSTNKTYTL NKKKPNPNTS 701 750 BACU011116/1-646 KVVTLEKNLQ --VGYTLLIR NSSSYIDVTG KKNQRSPHPL ARKRCAVCPQ ENSP00000429633/1-752 KVVKLEKNLQ SNCEWETVVY GKTEDQLIMT EQARRYLSTY TATSSTSRAL ENSBTAP00000015897/1-687 KVVTLEKNLQ STCEWETVVY GKTEDQLIMT EQARRYLSTY TATGSTSRAL bmy_11991T0/1-618 KVVTLEKNLQ S-CEWETVVY GKTEDQLIMT EQARRYLSTY TTTGSTSRAL ENSTTRP00000016244/1-743 KVVTLEKNLQ S-CEWETVVY GKTEDQLIMT EQARRYLSTY TATGSTSRAL 751 800 BACU011116/1-646 LIFLLRDGIE FTSVPSQDAP AGG ENSP00000429633/1-752 IL-------- ---------- --- ENSBTAP00000015897/1-687 IL-------- ---------- --- bmy_11991T0/1-618 IL-------- ---------- --- ENSTTRP00000016244/1-743 IL-------- ---------- ---