KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:57:34 2014 Check: 00 .. Name: ENSP00000301037/1-410 Len: 413 Check: 6048 Weight: 1.00 Name: ENSBTAP00000015900/1-278 Len: 413 Check: 1288 Weight: 1.00 Name: ENSTTRP00000003838/1-269 Len: 413 Check: 983 Weight: 1.00 Name: bmy_00113T0/1-317 Len: 413 Check: 3920 Weight: 1.00 // 1 50 ENSP00000301037/1-410 MGAVSCRQGQ HTQQGEHTRV AVPHKQGGNI RGPWARGWKS LWTGLGTIRS ENSBTAP00000015900/1-278 MGAVSCRQGH HAQ------M AASHK-GGNI RGPWVQGWKS LWSGVGTTRS ENSTTRP00000003838/1-269 MGAVSCRKGQ HAQ------M AAPHKQGGNI QGPWVRG-KS LWPGVGTTRS bmy_00113T0/1-317 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000301037/1-410 DLEE-LWELR GHHYLHQESL KPAPVLVEKP LPEWPVPQFI NLFLPEFPIR ENSBTAP00000015900/1-278 GVKE-LWGLR GHQFLHREPL EPAPLLVEKP LPEWPVPQFI NLFLPEFPIR ENSTTRP00000003838/1-269 GLKELLWGLQ GHQFLHQEPL EPAPLLVEKP LPEWPVPQFI NLFLPEFPIR bmy_00113T0/1-317 ---------- GHQFLHQEPL EPAPLLVEKP LPEWPVPQFI NLFLPEFPIR 101 150 ENSP00000301037/1-410 PIRGQQQLKI LGLVAKGSFG TVLKVLDCTQ KAVFAVKVVP KVKVLQRDTV ENSBTAP00000015900/1-278 PLSGHQQLKI LGLVAKGSFG TVLKVLDCGQ KAVFAVKVVP KAKVLQRDIL ENSTTRP00000003838/1-269 PLRGHQQLKI LGLVAKGSFG TVLKVLDCGQ KAVFVVKVVP KVKVLQRDNL bmy_00113T0/1-317 PLRGHQQLKI LGLVAKGSFG TVLKVLDCGQ KAVFVVKVVP KVKVLQRDNL 151 200 ENSP00000301037/1-410 RQCKEEVSIQ RQINHPFVHS LGDSWQGKRH LFIMCSYCST DLYSLWSAVG ENSBTAP00000015900/1-278 RQCKEEVSIQ RQINHPFVHS MGDSWQGKRH LFIMCSYCST DLYSLWSAVG ENSTTRP00000003838/1-269 RQCKEEVSIQ RQINHPFVHS LGDSWQGKRH LFMMCSYCST DLYSLWSAVG bmy_00113T0/1-317 RQCKEEVSIQ RQINHPFVHS LGDSWQGKRH LFMS------ ---------- 201 250 ENSP00000301037/1-410 CFPEASIRLF AAELVLVLCY LHDLGIMHRD VKMENILLDE R-GHLKLTDF ENSBTAP00000015900/1-278 RLTEASIRLF AAELILVLCY LHDLGIIHRD VKMENILLDE R-GHLKLTDF ENSTTRP00000003838/1-269 CFSEASIRLF AAELILVLCY LHDFGIIHRD VKMENILLDE RXXXXELTDF bmy_00113T0/1-317 ---------- ---------Y LHDFGIIHRD VKMENILLDE R-GHLKLTDF 251 300 ENSP00000301037/1-410 GLSRHVPQGA QAYTICGTLQ YMAPEVLSGG PYNHAADWWS LGVLLFSLAT ENSBTAP00000015900/1-278 GLSRHLPQGA RAYTICGTLQ YMGEGEAKGG KKEDVKK--- ---------- ENSTTRP00000003838/1-269 GLSRHLPQGT RAYTICGTLQ YMGE---RG- ---------- ---------- bmy_00113T0/1-317 GLSRHLPQGT RAYTICGTLQ YMAPEVLSGG PYNHAADWWS LGVLLFSLST 301 350 ENSP00000301037/1-410 GKFPVAAERD HVAMLASVTH SDSEIPASLN QGLSLLLHEL LCQNPLHRLR ENSBTAP00000015900/1-278 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003838/1-269 ---------- ---------- ---------- ---------- ---------- bmy_00113T0/1-317 GKFPVPAERD HVAMLASVTH YDSAIPASLN QGLSLLLHEL LCQNPLHRLR 351 400 ENSP00000301037/1-410 YLHHFQVHPF FRGVAFDPEL LQKQPVNFVT ETQATQPS-S AETMPFDDFD ENSBTAP00000015900/1-278 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003838/1-269 ---------- ---------- ---------- ---------- ---------- bmy_00113T0/1-317 YLHHFQVHPF FRGVAFDPEL LQKHPVNFVM ETQATQPSPS SESMFFKDFD 401 450 ENSP00000301037/1-410 CDLESFLLYP IPA ENSBTAP00000015900/1-278 ---------- --- ENSTTRP00000003838/1-269 ---------- --- bmy_00113T0/1-317 CNLESFLVHP SLA