KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:34 2014 Check: 00 .. Name: ENSBTAP00000015901/1-460 Len: 801 Check: 5586 Weight: 1.00 Name: BACU010824/1-549 Len: 801 Check: 2411 Weight: 1.00 Name: ENSP00000238667/1-526 Len: 801 Check: 739 Weight: 1.00 Name: bmy_03516T0/1-517 Len: 801 Check: 4021 Weight: 1.00 Name: ENSTTRP00000014507/1-525 Len: 801 Check: 9457 Weight: 1.00 // 1 50 ENSBTAP00000015901/1-460 ILDRE----- ---------- ---------- ---------- ---------- BACU010824/1-549 MVNEEPNQQE RDGSASQTSA LGENPSLSAH PSVSARPSVS IHPSVSAHRS ENSP00000238667/1-526 MVNEGPNQEE SDDTPVPESA LQADPSVSVH PSVSVHPSVS INPSVSVHPS bmy_03516T0/1-517 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014507/1-525 MVNEEPNQQE RDGTPLQTSA LGENPSLLAH PSVSAHPSVS IHPSVSAHPS 51 100 ENSBTAP00000015901/1-460 ---------- ---------- -----FTIKV SKHRWAVVLV FSCYSMCNAF BACU010824/1-549 SSAHPSTLAQ PSGSAHPSSS GPEDLGVIKV SKRRWAVVLV FSCYSMCNAF ENSP00000238667/1-526 SSAHPSALAQ PSGLAHPSSS GPEDLSVIKV SRRRWAVVLV FSCYSMCNSF bmy_03516T0/1-517 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014507/1-525 SSVQPSSLDL PSGLAHPSSS GPEDLSVIKV SKRRWAVVLV FSCYSMCNAF 101 150 ENSBTAP00000015901/1-460 QWIQYAAINN IFMYFYGVSS FAIDWLSMCY MLAYIPLLLP VAWLLEKFGL BACU010824/1-549 QWIQYSSINN IFMNFYGVSA FAIDWLSMCY MLTYIPLLLP VAWLLEKFGL ENSP00000238667/1-526 QWIQYGSINN IFMHFYGVSA FAIDWLSMCY MLTYIPLLLP VAWLLEKFGL bmy_03516T0/1-517 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014507/1-525 QWIQYGSINN IFMNFYGVSA FAIDWLSMCY MLTYIPLLLP VAWLLEKFGL 151 200 ENSBTAP00000015901/1-460 RTIALAGSAL NCLGAWVKLG SLQPHLFPVT VLGQVVCSVA QVFILGMPSR BACU010824/1-549 RTIALTGSAL NCLGAWVKLG SLKPHLFPVT LLGQVVCSVA QVFILGMPSR ENSP00000238667/1-526 RTIALTGSAL NCLGAWVKLG SLKPHLFPVT VVGQLICSVA QVFILGMPSR bmy_03516T0/1-517 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014507/1-525 RTIALTGSAL NCLGAWVKLG SLKPHLFPVT VLGQVICSVA QVFILGMPSR 201 250 ENSBTAP00000015901/1-460 IASVWFGDDE VSTACSIAVL GNQLGIALGF LVPAVSV--- ---------- BACU010824/1-549 IASVWFGANE VSTACSVAVF GNQ-GRGDPI ICPRMLALYS HGTPQKSKSF ENSP00000238667/1-526 IASVWFGANE VSTACSVAVF GNQLGIAIGF LVPPVLV--- ---------- bmy_03516T0/1-517 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014507/1-525 IASVWFGANE VSTACSVAVF GNQLGIAIGF LVPPVLV--- ---------- 251 300 ENSBTAP00000015901/1-460 ---------- PNIDNPDELA YYISIMF--- YVTAGVATLL FILVI----- BACU010824/1-549 MRVPPRWARS LSLVSKPHRP LAIQSLFLFE FCLSWIASTL ASLQVSPQLT ENSP00000238667/1-526 ---------- PNIEDRDELA YHISIMF--- YIIGGVATLL LILVI----- bmy_03516T0/1-517 ---------- ---------- -----MF--- YIIAGVATLL FILVI----- ENSTTRP00000014507/1-525 ---------- PNIKDQDKLA YHISIMF--- YIIAGVATLL FILVI----- 301 350 ENSBTAP00000015901/1-460 VVFKEKPKHP PSRAQCLSYA LASTDASYLS SIIQLFKNLN FVLLVITYGL BACU010824/1-549 AVFKEKPKHP PSRAQSLSYA LASPDASYLS SIVRLFKNLN FVLLIVTYGL ENSP00000238667/1-526 IVFKEKPKYP PSRAQSLSYA LTSPDASYLG SIARLFKNLN FVLLVITYGL bmy_03516T0/1-517 IVFKEKPKHP PSRAQSLSYA LASPDASYLS SIVRLFKNLN FVLLIITYGL ENSTTRP00000014507/1-525 IVFKEKPKHP PSRAQSLSYA LASPDASYLS SIVRLFKNLN FVLLIITYGL 351 400 ENSBTAP00000015901/1-460 NAGAFYALCT LLNRMVIFHY VEEGVIVGRI GLTIVLAGML GAVISGIWLD BACU010824/1-549 NAGAFYALST LLNRMVILHY PGEEVNAGRI GLTIVISGML GAMISGIWLD ENSP00000238667/1-526 NAGAFYALST LLNRMVIWHY PGEEVNAGRI GLTIVIAGML GAVISGIWLD bmy_03516T0/1-517 NAGAFYALST LLNRMVILHY PGEEVNAGRI GLTIVISGML GAMISGIWLD ENSTTRP00000014507/1-525 NAGAFYALST LLNRMVILHY PGEELNAGRI GLTIVIAGML GAMISGLWLD 401 450 ENSBTAP00000015901/1-460 RTKTYKQTSL VLYIMTLVGM AGYTGTLNLG HLWIVYITAG IIGFSITGYL BACU010824/1-549 RTKTYKETTL VVYIMALVGM VVYTLTLNLG HLWVVFITAG AMGFFMTGYL ENSP00000238667/1-526 RSKTYKETTL VVYIMTLVGM VVYTFTLNLG HLWVVFITAG TMGFFMTGYL bmy_03516T0/1-517 RTKTYKETTL VVYIMTLVGM VVYTLTLNLG HLWVVFITAG AMGFFMTGYL ENSTTRP00000014507/1-525 RTKTYKETTL VVYIMTLVGM VVYTLTLNLG HLWVVFITAG AMGFFMTGYL 451 500 ENSBTAP00000015901/1-460 TLGFEFAVEL TYLESEVVSS SGLLNVSAQV FGIIFTISQG QIIDNYGTMP BACU010824/1-549 PLGFEFAVEL TYPESEGI-S SGLLNMSAQV FGIIFTISQG QIIDNYGTRP ENSP00000238667/1-526 PLGFEFAVEL TYPESEGI-S SGLLNISAQV FGIIFTISQG QIIDNYGTKP bmy_03516T0/1-517 PLGFEFAVEL TYPESEGI-S SGLLNMSAQV FGIIFTISQG QIIDNYGTRP ENSTTRP00000014507/1-525 PLGFEFAVEL TYPESEGM-S SGLLNVSAQV FGIIFTISQG QIIDNYGTRP 501 550 ENSBTAP00000015901/1-460 GNIFLCVFLT LGAVLTAFIK ADLRRQRILR MALKG----- ---QKP---- BACU010824/1-549 GNIFLCVFLT LGAVLTAFIR ADLRRQKANK ETPENVS--- ---------- ENSP00000238667/1-526 GNIFLCVFLT LGAALTAFIK ADLRRQKANK ETLEN----- ---------- bmy_03516T0/1-517 GNIFLCVFLT LGAILTAFIR ADLRRQKANK ETPENVSCSS RDGEAPRVTG ENSTTRP00000014507/1-525 GNIFLCAFLT LGAVLTAFIR ADLRRQKANK ETPEN----- ---------- 551 600 ENSBTAP00000015901/1-460 ---------- ---------- ---------- ---------- ---------- BACU010824/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000238667/1-526 ---------- ---------- ---------- ---------- ---------- bmy_03516T0/1-517 GYESNSASRT WRQFPWELPQ PCFFAALSGL FSRFLPFSWP PCSGPRSSSL ENSTTRP00000014507/1-525 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000015901/1-460 ---------- ---------- ---------- ---------- ---------- BACU010824/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000238667/1-526 ---------- ---------- ---------- ---------- ---------- bmy_03516T0/1-517 CHRLLSSTHT WILRQVLRPW VLSFQPGVGD WRGKVATWGP HSVMAVVASR ENSTTRP00000014507/1-525 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000015901/1-460 ---------- ---------- ---------- ---------- ---------- BACU010824/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000238667/1-526 ---------- ---------- ---------- ---------- ---------- bmy_03516T0/1-517 QWPSWHVSAP QAVPWDRRDR GQWVAIRALK GQVRKQELMV AAGSRWREAA ENSTTRP00000014507/1-525 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000015901/1-460 ---------- ---------- ---------- ---------- ---------- BACU010824/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000238667/1-526 ---------- ---------- ---------- ---------- ---------- bmy_03516T0/1-517 GTGHSAGTQG KPETGVLFSA ACENCGITAV EMGCSRISQP DPCPRGPAPE ENSTTRP00000014507/1-525 ---------- ---------- ---------- ---------- ---------- 751 800 ENSBTAP00000015901/1-460 ---------- ---------- --------QE GEEEKDSKSS KAPTTVQKEH BACU010824/1-549 ---------- ---------- --------ML GAAGLRSGSR LC-------- ENSP00000238667/1-526 ---------- ---------- --------KL QEEEEESNTS KVPTAVSEDH bmy_03516T0/1-517 LTYAIKHPAF ITVLCCICST HTKPPEEEEE EEEEEESKTS KAPTSVLEEH ENSTTRP00000014507/1-525 ---------- ---------- ---------K PPEEDESKTS KAPTGVLEEH 801 850 ENSBTAP00000015901/1-460 F BACU010824/1-549 - ENSP00000238667/1-526 L bmy_03516T0/1-517 L ENSTTRP00000014507/1-525 F