KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:35 2014 Check: 00 .. Name: bmy_04274T0/1-234 Len: 357 Check: 6020 Weight: 1.00 Name: ENSP00000401653/1-268 Len: 357 Check: 7107 Weight: 1.00 Name: ENSBTAP00000015907/1-263 Len: 357 Check: 4062 Weight: 1.00 Name: BACU007605/1-333 Len: 357 Check: 715 Weight: 1.00 Name: ENSTTRP00000013956/1-263 Len: 357 Check: 4093 Weight: 1.00 // 1 50 bmy_04274T0/1-234 MMPGQCRLPA PNGEHAMILR PEPMAGTAPF GNHSTGDFDD GFLRRKQRRN ENSP00000401653/1-268 MVLMSC---- -----DQRLI SLLLVGTATF GNHSSGDFDD GFLRRKQRRN ENSBTAP00000015907/1-263 MFYFHC---- ---------- PPQLEGTAPF GNHSTGDFDD GFLRRKQRRN BACU007605/1-333 MFYFHC---- ---------- PPQLEGTAPF GNHSTGDFDD GFLRRKQRRN ENSTTRP00000013956/1-263 MFYFHC---- ---------- PPQLEGTAPF GNHSTGDFDD GFLRRKQRRN 51 100 bmy_04274T0/1-234 RTTFTLQQLE ALEAVFAQTH YPDVFTREEL AMKINLTEAR VQ-------- ENSP00000401653/1-268 RTTFTLQQLE ALEAVFAQTH YPDVFTREEL AMKINLTEAR VQ-------- ENSBTAP00000015907/1-263 RTTFTLQQLE ALEAVFAQTH YPDVFTREEL AMKINLTEAR VQ-------- BACU007605/1-333 RTTFTLQQLE ALEAVFAQTH YPDVFTREEL AMKINLTEAR VQLANSCLKT ENSTTRP00000013956/1-263 RTTFTLQQLE ALEAVFAQTH YPDVFTREEL AMKINLTEAR VQ-------- 101 150 bmy_04274T0/1-234 ---------- ---------- -------VWF QNRRAKWRKT ERGASDQEPG ENSP00000401653/1-268 ---------- ---------- -------VWF QNRRAKWRKT ERGASDQEPG ENSBTAP00000015907/1-263 ---------- ---------- -------VWF QNRRAKWRKT ERGASDQEPG BACU007605/1-333 ELQIEINGTI IEHSEVEDHN FSLKGARVWF QNRRAKWRKT ERGASDQEPG ENSTTRP00000013956/1-263 ---------- ---------- -------VWF QNRRAKWRKT ERGASDQEPG 151 200 bmy_04274T0/1-234 AKEPMAEVTP PPVRNINSPP PGDQARSKKE VLEAQQSLGR TVGPTGPFFP ENSP00000401653/1-268 AKEPMAEVTP PPVRNINSPP PGDQARSKKE ALEAQQSLGR TVGPAGPFFP ENSBTAP00000015907/1-263 AKEPMAEVTP PPVRNLNSPP PGDQARSKKE ALEAQQSLGR TVGPTGPFFP BACU007605/1-333 AKEPMAEVTP PPVRNINSPP PGDQARSKKE VLEAQQSLGR TVGPTGPFFP ENSTTRP00000013956/1-263 AKEPMAEVTP PPVRNINSPP PGDQARSKKE VLEAQQSLGR TVGPTGPFFP 201 250 bmy_04274T0/1-234 SCLPGTLLNT ATYAQALSHV ASLKGEF--- -------GLC ------CLLV ENSP00000401653/1-268 SCLPGTLLNT ATYAQALSHV ASLKGGPLCS CCVPDPMGLS FLPTYGCQSN ENSBTAP00000015907/1-263 SCLPGTLLNT ATYAQALSHV ASLKGGPLCS CCVPDPMGLS FLPTYGCQTN BACU007605/1-333 SCLPGTLLNT ATYAQALSHV ASLK------ ----DPMGLS FLPPYGCQTN ENSTTRP00000013956/1-263 SCLPGTLLNT ATYAQALSHV ASLKGGPLCS CCVPDPMGLS FLPPYGCQTN 251 300 bmy_04274T0/1-234 RGRGSACLRH LQGDHGDG-- -----LPLLF SWAGP----- ---------- ENSP00000401653/1-268 RTASVATLRM KAREHSEAVL QSANLLPSTS SSPGPVAKPA PPDGSQEKTS ENSBTAP00000015907/1-263 RTASVAALRM KAREHSEAVL QSANLLPSTS SSPSPVAKPA PPDGSQDKTP BACU007605/1-333 RTASVAALRM KAREHSEAVL QSANLLPSTS SSPSPAAKPA PPDGSQDKTP ENSTTRP00000013956/1-263 RTASVAALRM KAREHSEAVL QSANLLPSSS NSPSPAAKPA PPDGSQDKTP 301 350 bmy_04274T0/1-234 -----SLHRG LV-------- ---------- ---------- ---------- ENSP00000401653/1-268 PTKEQSEAEK SV-------- ---------- ---------- ---------- ENSBTAP00000015907/1-263 PSKEQSEHEK SV-------- ---------- ---------- ---------- BACU007605/1-333 PSKEQSEAPG SPDSAGCILA AMQGRGPGRI VRQCWGCGCG ALAWISWVPQ ENSTTRP00000013956/1-263 PSKEQSEGEK SV-------- ---------- ---------- ---------- 351 400 bmy_04274T0/1-234 ------- ENSP00000401653/1-268 ------- ENSBTAP00000015907/1-263 ------- BACU007605/1-333 MSQQPLC ENSTTRP00000013956/1-263 -------