KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:40 2014 Check: 00 .. Name: ENSP00000391669/1-916 Len: 954 Check: 6387 Weight: 1.00 Name: ENSBTAP00000015922/1-880 Len: 954 Check: 8957 Weight: 1.00 Name: ENSTTRP00000001140/1-863 Len: 954 Check: 9613 Weight: 1.00 Name: bmy_14458T0/1-910 Len: 954 Check: 5760 Weight: 1.00 Name: BACU018196/1-836 Len: 954 Check: 9097 Weight: 1.00 // 1 50 ENSP00000391669/1-916 MPAKPFLSSV LLSWKVLDFS GPGPQGTGQP CSCGHWAEGQ GGPPEPAGGP ENSBTAP00000015922/1-880 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001140/1-863 ---------- ---------- ---------- ---------- ---------- bmy_14458T0/1-910 ---ARWLRRP DQDPGGFGAL GNPRARGAGS SLCALRGAGA PGRPDTMNYL BACU018196/1-836 ---------- ---------- ---------- ---------- ------MSVP 51 100 ENSP00000391669/1-916 NVLAKALYDN VAESPDELSF RKGDIMTVLE QDTQGLDGWW LCSLHGRQGI ENSBTAP00000015922/1-880 NVLAKALYDN VAESPDELSF RKGDIMTVLE RDTQGLGGWW LCSLHGRQGI ENSTTRP00000001140/1-863 NVLAKALYDN VAESPDELSF RKGDIMTVLE RDTQGLDGWW LCSLHGRQGI bmy_14458T0/1-910 NVLAKALYDN VAESPDELSF RKGDIMTVLE RDTQGLDGWW LCSLHGRQGI BACU018196/1-836 NVLAKALYDN VAESPDELSF RKGDIMTVLE RDTQGLDGWW LCSLHGRQGI 101 150 ENSP00000391669/1-916 VPGNRLKILV GMYDKKPAGP GPGPPATPAQ PQPGLHAPAP PASQYTPMLP ENSBTAP00000015922/1-880 VPGNRLKILV GMHDKKPAAP SP-------- PQPSLL---A PAAPYTPMLS ENSTTRP00000001140/1-863 VPGNRLKILV GMHDKKPVGP GPGPPASSAL PQPSLH---P PAAQYTPMLP bmy_14458T0/1-910 VPGNRLKILV GMHDKKPVGP GPGPPASSAL PQPSLH---P LAAQYTPMLP BACU018196/1-836 VPGNRLKILV GMHDKKPVGP GPGPPASSAL PQPSLH---P PAAQYTPMLP 151 200 ENSP00000391669/1-916 NTYQPQPDSV YLVPTPSKAQ QGLYQVPGPS PQFQSPPAKQ TSTFSKQTPH ENSBTAP00000015922/1-880 ATFPPQPDGV YLVPTPSKTQ QGLYQAPGPS PQFQSPPAKQ TSAFSKQMPH ENSTTRP00000001140/1-863 ATYQPQPDSV YLVPTPSKTQ QGLYQAPGPS PQFQSPPAKQ TATFSKQMPH bmy_14458T0/1-910 ATYQPQPDSV YLVPTPSKTQ QGLYQAPGPS PQFQSPPAKQ TATFSKQMPH BACU018196/1-836 ATYQPQPDSV YLVPTPSKTQ QGLYQAPGPS PQFQSPPAKQ TATFSKQMPH 201 250 ENSP00000391669/1-916 HPFPSPATDL YQVPPGPGGP AQDIYQVPPS AGMGHDIYQV PPSMDTRSWE ENSBTAP00000015922/1-880 HPFPSPAPDL YQVPPGPGSP AQDV------ -------YQV PPSMDARHWE ENSTTRP00000001140/1-863 HPFPSPAPDL YQVPPGPGSP AQDIYQVPPS AGIGHDIYQV PPSMDARSWE bmy_14458T0/1-910 HPFPSPAPDL YQVPPGPGSP AQDIYQVPPS AGIGHDIYQV PPSMDARSWE BACU018196/1-836 HPFPSPAPDL YQVPPGPGSP AQDIYQVPPS AGIGHDIYQV PPSMDARSWE 251 300 ENSP00000391669/1-916 GTKPPA---- ---------- ---------- ---------- ----KVVVPT ENSBTAP00000015922/1-880 GTKPPAKGPA SDLWDHGGSC SGSMFGLGPR WEVSAEREDT GSPGKVVVPT ENSTTRP00000001140/1-863 GTKPPA---- ---------- ---------- ---------- ----KVAVST bmy_14458T0/1-910 GTKPPA---- ---------- ---------- ---------- ----KVAVST BACU018196/1-836 GTKPPA---- ---------- ---------- ---------- ----KVAVST 301 350 ENSP00000391669/1-916 RVGQGYVYEA AQPEQDEYDI PRHLLAPGPQ DIYDVPPVRG LLPSQYGQEV ENSBTAP00000015922/1-880 RVGQGYVFEA PPPEQDEYDI PRHLLAPGPQ DIYDVPPVRG LLPGQCSQEV ENSTTRP00000001140/1-863 RVGQGYVFEA PQPEQDEYDI PRHLLAPGPQ DIYDVPPVRG LLPSQYGQEV bmy_14458T0/1-910 RVGQGYVFEA PQPEQDEYDI PRHLLAPGPQ DIYDVPPVRG LLPSQYGQEV BACU018196/1-836 RVGQGYVFEA PQPEQDEYDI PRHLLAPGPQ DIYDVPPVRG LLPSQCGQEV 351 400 ENSP00000391669/1-916 YDTPPMAVKG PNGRDPLLEV YDVPPSVEKG LPPSNHHAVY DVPPSVSKDV ENSBTAP00000015922/1-880 YDTPPMAVKG PNGRDPSLDV YDVPPSVEKG LPPASHHAVY DVPPSVSKDV ENSTTRP00000001140/1-863 YDTPPMAVKG PNGRDPSLDV YDVPPSVEKG LPPSSHHAVY DVPPSVSKDV bmy_14458T0/1-910 YDTPPMAVKG PNGRDPSLDV YDVPPSVEKG LPPSSHHAVY DVPPSVSKDV BACU018196/1-836 YDTPPMAVKG PSGRDPSLAV YDVPPSVEKG LSPSSLHAVY DVPPSVSKDV 401 450 ENSP00000391669/1-916 PDGPLLREET YDVPPAFAKA KPFDPARTPL VLAAPPPDSP PAEDVYDVPP ENSBTAP00000015922/1-880 PDGPLLREET YDVPPAFTKA KPFDPTRHPL VLAVPPPDSP PAEDVYDVPP ENSTTRP00000001140/1-863 PDGPLLREET YDVPPAFAKA KPFDPTRHPL VLAAPPPDSP PAEDVYDVPP bmy_14458T0/1-910 PDGPLLREET YDVPPAFAKA KPFDPTRHPL VLAAPPPDSP PAEDVYDVPP BACU018196/1-836 PDGPLLREET YDVPPAFAKA KPFDPTRHPL VLAAPPPDSP PAEDVYDVPP 451 500 ENSP00000391669/1-916 PAPDLYDVPP GLRRPGPGTL YDVPRERVLP PEVADGGVVD SGVYAVPPPA ENSBTAP00000015922/1-880 PAPDLYDVPP GLRRPGPGAL YDVPRERLLP PEVAGSGTAD AGVYSVPPAA ENSTTRP00000001140/1-863 PAPDLYDVPP GLRRPGPGTL YDVPRERVLP PEAANGSVAD DGVYAVPPPA bmy_14458T0/1-910 PAPDLYDVPP GLRRPGPGTL YDVPRERVLP PEAANGSVAD DGVYAVPPPA BACU018196/1-836 PAPDLYDVPP GLRRPGPGTL YDVPRERVLP PEAANGSVAD DGVYAVPPPA 501 550 ENSP00000391669/1-916 EREAPAEGKR LSASSTGSTR SSQSASSLEV AGPGREPLEL EVAVEALARL ENSBTAP00000015922/1-880 EREAPADAKR LSASSTGSTR SSQSASSLEA AVPGREPLEL EVAVEALARL ENSTTRP00000001140/1-863 EREAPADTKR LSASSTGSTR SSQSASSLEA AVPGREPLEL EVAVEALARL bmy_14458T0/1-910 EREAPADAKR LSASSTGSTR SSQSASSLEA AVPSREPLEL EVAVEALARL BACU018196/1-836 EREAPADAKR L--------- ---------- ---------- --AVEALARL 551 600 ENSP00000391669/1-916 QQGVSATVAH LLDLAGSAGA TGSWRSPSEP QEPLVQDLQA AVAAVQSAVH ENSBTAP00000015922/1-880 QQGVSATVAH LLDLAGSVGG CGGRRGPPEP QEPPAVDLRA AVAAVHAAVH ENSTTRP00000001140/1-863 QQGVSATVAH LLDLAGSAGG CGGWRSTSEP QEPPAQDLRA AVAAVHGAVH bmy_14458T0/1-910 QQGVSATVAH LLDLAGSAGG CGGWHSTSEP QEPPAQDLRA AVAAVHGAVH BACU018196/1-836 QQGVSATVAH LLDLAGSAGG CEGWRSTSEP QEPPAQDLRA AVAAVHGAVH 601 650 ENSP00000391669/1-916 ELLEFARSAV GNAAHTSDRA LHAKLSRQLQ KMEDVHQTLV AHGQALDAGR ENSBTAP00000015922/1-880 ELLEFARNAV GNATHTSDRT LHAKLSRQLQ KMEDVYQTLV AHGQALDSSR ENSTTRP00000001140/1-863 ELLEFARSAV GNAAHTFDRT LHAKLSRQLQ KMEDVYQTLV AHGQALDSSR bmy_14458T0/1-910 ELLEFARSAV GNATHTSDRT LHAKLSRQLQ KMEDVYQTLV AHGQALDSSR BACU018196/1-836 ELLEFARSAV GNAAHTSDRT LHAKLSRQLQ KMEDVYQALV AHGQALDSSR 651 700 ENSP00000391669/1-916 GGSGATLEDL DRLVACSRAV PEDAKQLASF LHGNASLLFR RTKATAPGPE ENSBTAP00000015922/1-880 GGLGATPEDL DRLVACSRAV PEDAKQLASF LHGNASLLFR RTKASVAGPE ENSTTRP00000001140/1-863 GGLGATPEDL DRLVACSRAV PEDVKQLASF LHGNASLLFR RTKASVPGPE bmy_14458T0/1-910 GGLGATPEDL DRLVACSRAV PEDVKQLASF LHGNASLLFR RTKASVPGPE BACU018196/1-836 GGLGATPEDL DRLVACSRAV PEDVKQLASF LHGNASLLFR RTKASVPGPE 701 750 ENSP00000391669/1-916 GGGTLHPNPT DKTSSIQSRP LPSPPKFTSQ DSPDGQYENS EGGWMEDYDY ENSBTAP00000015922/1-880 GGGPLHPNPT DKASSIQSRP LPSPPKFTSQ DSPDGQYENS EGGWMEDYDY ENSTTRP00000001140/1-863 GGGPLHLNPT DKASSIQSRP LPSPPKFTSQ DSPDGQYENS EGGWMEDYDY bmy_14458T0/1-910 GGGPLHPNPT DKASSIQSRP LPSPPRFTSQ DSPDGQYENS EGGWMEDYDY BACU018196/1-836 GGGPLHPNPT DKASSIQSRP LPSPPRFTSQ DSPDGQYENS EGGWMEDYDY 751 800 ENSP00000391669/1-916 VHLQGKEEFE KTQKELLEKG SITRQGKSQL ELQQLKQFER LEQEVSRPID ENSBTAP00000015922/1-880 VHLQGKEEFE KTQKELLEKG NIMRQGKGQL ELQQLKQFER LEQEVSRPID ENSTTRP00000001140/1-863 VHLQGKEEFE KTQKELLEKG NIMRQGKGQL ELQQXXXXXX XXXXXXXXXX bmy_14458T0/1-910 VHLQGKEEFE KTQKELLEKG NIMRQGKGQL ELQQLKQFER LEQEVSRPID BACU018196/1-836 VHLQGKEEFE KTQKELLEKG NIMRQGKGQL ELQQLKQFER LEQEVSRPID 801 850 ENSP00000391669/1-916 HDLANWTPAQ PLAPGRTGGL GPSDRQLLLF YLEQCEANLT TLTNAVDAFF ENSBTAP00000015922/1-880 HDLASWTPAQ AAMPGRPGGL GPSDRQLLLF YLEQCEANLT TLTNAVDAFF ENSTTRP00000001140/1-863 XXXXXXXXXX XXXPGRTGGL GPSDRQLLLF YLEQCEANLT TLTNAVDAFF bmy_14458T0/1-910 HDLANWMPAQ PLAPGRTGGL GPSDRQLLLF YLEQCEANLT TLTNAVDAFF BACU018196/1-836 HDLANWMPAQ PLAPGRTGGL GPSDRQLLLF YLEQCEANLT TLTNAVDAFF 851 900 ENSP00000391669/1-916 TAVATNQPPK IFVAHSKFVI LSAHKLVFIG DTLSRQAKAA DVRSQVTHYS ENSBTAP00000015922/1-880 TAVATNQPPK IFVAHSKFVI LSAHKLVFIG DTLSRQAQAA DVRSQVTHYS ENSTTRP00000001140/1-863 TAVATNQPPK IFVAHSKFVI LSAHKLVFIG DTLSRQAKAA DVRSQVTHYS bmy_14458T0/1-910 TAVATNQPPK IFVAHSKFVI LSAHKLVFIG DTLSRQAKAA DVRSQVTHYS BACU018196/1-836 TAVATNQPPK IFVAHSKFVI LSAHKLVFIG DTLSRQAKAA DVRSQVTHYS 901 950 ENSP00000391669/1-916 NLLCDLLRGI VATTKAAALQ YPSPSAAQDM VERVKELGHS TQQFRRVLGQ ENSBTAP00000015922/1-880 NLLCELLRGI VATTKAAALQ YPSPAAAQDM VDRVKELGHS TQQFRRVLGQ ENSTTRP00000001140/1-863 NLLCDLLRGI VATTKAAALQ YPSPAAAQDM VDRVKELGHS TQQFRRVLGQ bmy_14458T0/1-910 NLLCDLLRGI VATTKAAALQ YPSPAAAQDM VDRVKELGHS TQQFRRVLGQ BACU018196/1-836 NLLCDLLRGI VATTKAAALQ YPSPAAAQDM VDRVKELGHS TQQFRRVLGQ 951 1000 ENSP00000391669/1-916 LAAA ENSBTAP00000015922/1-880 LAAA ENSTTRP00000001140/1-863 LAAA bmy_14458T0/1-910 LAAA BACU018196/1-836 LAAA