KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:41 2014 Check: 00 .. Name: bmy_19997T0/1-169 Len: 258 Check: 4078 Weight: 1.00 Name: BACU012752/1-142 Len: 258 Check: 5000 Weight: 1.00 Name: ENSP00000232219/1-197 Len: 258 Check: 4213 Weight: 1.00 Name: ENSTTRP00000004557/1-135 Len: 258 Check: 9586 Weight: 1.00 Name: ENSBTAP00000015936/1-135 Len: 258 Check: 9591 Weight: 1.00 // 1 50 bmy_19997T0/1-169 ---------- ---------- ---------- ---------- ---------- BACU012752/1-142 ---------- ---------- ---------- ---------- ---------- ENSP00000232219/1-197 MDPPAGFVRA GNPAVAAPQS PLSPEGAHFR AAHHPRSTGS RCPGSLQPSR ENSTTRP00000004557/1-135 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015936/1-135 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_19997T0/1-169 --------ME QGTPMVF--- ---------- --LRGA---- ---------- BACU012752/1-142 ---------- --MPVDFTGY WKMLANENFE EYLRALXXXX XXXXXPGRAA ENSP00000232219/1-197 PLVANWLQSL PEMPVDFTGY WKMLVNENFE EYLRAL---- ---------- ENSTTRP00000004557/1-135 ---------- --MPVDFTGY WKMLANENFE EYLRAL---- ---------- ENSBTAP00000015936/1-135 ---------- --MPVDFTGY WKMLANENFE EYLRAL---- ---------- 101 150 bmy_19997T0/1-169 -DVNVALRKI ANLLKPDKEI VQNGDHMIIR TLSTFRNYIM DFQVGEEFEE BACU012752/1-142 GDVNVALRKI ANLLKPDKEI VQNGDHMIIR TLSTFRNYIM DFQVGEEFEE ENSP00000232219/1-197 -DVNVALRKI ANLLKPDKEI VQDGDHMIIR TLSTFRNYIM DFQVGKEFEE ENSTTRP00000004557/1-135 -DVNVALRKI ANLLKPDKEI VQDGDHMIIR TLSTFRNYIM DFQVGEEFEE ENSBTAP00000015936/1-135 -DVNVALRKI ANLLKPDKEI VQEGDHMIIR TLSTFRNYIM DFQVGKEFEE 151 200 bmy_19997T0/1-169 DLTGIDDRKC MPLSIRTVVG EQIREPSSWA NSMTLYEDSW SPLLSQDSGR BACU012752/1-142 DLTGIDDRKC M--------- ----TTVSWD GDKLECVQK- ----GEKEGR ENSP00000232219/1-197 DLTGIDDRKC M--------- ----TTVSWD GDKLQCVQK- ----GEKEGR ENSTTRP00000004557/1-135 DLTGIDDRKC M--------- ----TTVSWD GDKLECVQK- ----GEKEGR ENSBTAP00000015936/1-135 DLTGIDDRKC M--------- ----TTVSWD GDKLECVQK- ----GEKEGR 201 250 bmy_19997T0/1-169 PPPKYYRWHA LTVLLPVGRM DGPLLWPPLG PCAAEKPFSP AAQLEGGHGE BACU012752/1-142 ---GWTQW-- ---------I EGDELHL-VG S--------- -----GGTGG ENSP00000232219/1-197 ---GWTQW-- ---------I EGDELHLEMR V--------- -----EGVVC ENSTTRP00000004557/1-135 ---GWTQW-- ---------I EGDELHLEMR V--------- -----QGVVC ENSBTAP00000015936/1-135 ---GWTQW-- ---------I EGDELHLEMR V--------- -----EGVVC 251 300 bmy_19997T0/1-169 EHGWGRA- BACU012752/1-142 R------- ENSP00000232219/1-197 KQVFKKVQ ENSTTRP00000004557/1-135 KQVFKKVN ENSBTAP00000015936/1-135 KQVFKKVN