KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:44 2014 Check: 00 .. Name: ENSTTRP00000007455/1-1481 Len: 1690 Check: 3804 Weight: 1.00 Name: BACU002177/1-681 Len: 1690 Check: 872 Weight: 1.00 Name: bmy_06429T0/1-769 Len: 1690 Check: 4935 Weight: 1.00 Name: ENSP00000270238/1-1489 Len: 1690 Check: 3971 Weight: 1.00 Name: ENSBTAP00000015942/1-1413 Len: 1690 Check: 6057 Weight: 1.00 // 1 50 ENSTTRP00000007455/1-1481 MRQVPMLCNG YVTSEXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 ---------- ---------- ---------M PAPGALILLA AVSTSGCLAS ENSP00000270238/1-1489 MRQVLWLCNV CVTARETRHH LHLPAILDKM PAPGALILLA AVSASGCLAS ENSBTAP00000015942/1-1413 ---------- ---------- ---------S PVPT------ ---------- 51 100 ENSTTRP00000007455/1-1481 XXX------- ---------- ---XGFALGR APLAPPYAVV LISCSGLLAF BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 PAHPGIREPG PCKPGPQPSP VPTDGFALGR APLAPPYAVV LISCSGLLAF ENSP00000270238/1-1489 PAHP------ ---------- ---DGFALGR APLAPPYAVV LISCSGLLAF ENSBTAP00000015942/1-1413 ---------- ---------- ---DGFALGR APLAPPYAVV LISCSGLLAF 101 150 ENSTTRP00000007455/1-1481 IFLLLTCLCC KRGDVGFKEF ENPEGEDCSG EYTPPAEETS SSQSLPDVYI BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 IFLLLTCLCC KRGDVGF--- ---------- ---------- ---------- ENSP00000270238/1-1489 IFLLLTCLCC KRGDVGFKEF ENPEGEDCSG EYTPPAEETS SSQSLPDVYI ENSBTAP00000015942/1-1413 IFLLLTCLCC KRGDVGFKEF ENPEGEDCSG EYTPPAEETS SSQSLPDVYI 151 200 ENSTTRP00000007455/1-1481 LPLAEVSLPM PAPQPSHSDM TTPLGLSRQH LSYLQEIGSG WFGKVILGEI BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---KVILGEI ENSP00000270238/1-1489 LPLAEVSLPM PAPQPSHSDM TTPLGLSRQH LSYLQEIGSG WFGKVILGEI ENSBTAP00000015942/1-1413 LPLAEVSLPM PAPQPSHSDM TTPLGLSRQH LSYLQEIGSG WFGKVILGEI 201 250 ENSTTRP00000007455/1-1481 FSDYTPAQVV VKELRASAGP LEQRKFISEA QPY------- RSLQHPNVLQ BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 FSDYTPAQVV VKELRASAGP LEQRKFISEA QPYRQPPCPR RSLQHPNVLQ ENSP00000270238/1-1489 FSDYTPAQVV VKELRASAGP LEQRKFISEA QPY------- RSLQHPNVLQ ENSBTAP00000015942/1-1413 FSDYTPAQVV VKELRASAGP LEQRKFISEA QPY------- RSLQHPNVLQ 251 300 ENSTTRP00000007455/1-1481 CLGVCVETLP FLLIMEFCQL GDLKRYLRAQ RPPEGLSPEL PPRDLRTLQR BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 CLGVCVETLP FLLIMEFCQL GDLKRYLRAQ RPPEGLSPEL PPRDLRTLQR ENSP00000270238/1-1489 CLGLCVETLP FLLIMEFCQL GDLKRYLRAQ RPPEGLSPEL PPRDLRTLQR ENSBTAP00000015942/1-1413 CLGVCVETLP FLLIMEFCQL GDLKRYLRAQ RPPEGLSPEL PPRDLRTLQR 301 350 ENSTTRP00000007455/1-1481 MGLEITRGLA HLHSHNYVH- ---------- --SDLALRNC LLTSDLTVRI BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 MGLEIARGLA HLHSHNYVHS YPLLTSPPSP APSDLALRNC LLTSDLTVRI ENSP00000270238/1-1489 MGLEIARGLA HLHSHNYVH- ---------- --SDLALRNC LLTSDLTVRI ENSBTAP00000015942/1-1413 MGLEIARGLA HLHSHNYVH- ---------- --SDLALRNC LLTSDLTVRI 351 400 ENSTTRP00000007455/1-1481 GDYGLAHSNY KEDYYLTPER LWIPLRWAAP ELLGELHGTF MVVDQSRESN BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 GDYGLAHSNY K--------- ---------- ---------- ---------- ENSP00000270238/1-1489 GDYGLAHSNY KEDYYLTPER LWIPLRWAAP ELLGELHGTF MVVDQSRESN ENSBTAP00000015942/1-1413 GDYGLAHSNY K--------- ------XAAP ELLGELHGTF MVVDQSRESN 401 450 ENSTTRP00000007455/1-1481 IWSLGVTLWE LFEFGAQPYR HLSDEEVLAF VVRQQHVKLA RPRLKLPYGD BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 IWSLGVTLWE LFEFGAQPYR HLSDEEVLAF VVRQQHVKLA RPRLKLPYAD ENSBTAP00000015942/1-1413 IWSLGVTLWE LFEFGAQPYR HLSDEEVLAF VVRQQHVKLA RPRLKLPYAD 451 500 ENSTTRP00000007455/1-1481 YXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 YWYDILQSCW RPPAQRPSAS DLQLQLTYLL SERPPRPPPP PPPPRDGPFP ENSBTAP00000015942/1-1413 YWYDILQSCW RPPAQRPSAS DLQLQLTYLL SERPPRPPPP PPPPRDGPFP 501 550 ENSTTRP00000007455/1-1481 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 WPWPPAHSAP RPGTLSSPFP LLDGFPGADP DDVLTVTESS RGLNLECLWE ENSBTAP00000015942/1-1413 WPWPPQHSAP RPGTLSSPFP LLDGFPGADP DDVLTVTESS GGLNLECLWE 551 600 ENSTTRP00000007455/1-1481 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 KARRGAGRGG GAPAWQPASA PPAPHANPSN PFYEALSTPS VLPVISARSP ENSBTAP00000015942/1-1413 KARRGAGRGG G-PTWQPASA PPAPPSNPSN PFYEALSTPS VLPVISARSP 601 650 ENSTTRP00000007455/1-1481 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 SVSSEYYIRL EEHGSPPEPL FPNDWDPLDP GVPAPQAPQA PSEVPQLVSE ENSBTAP00000015942/1-1413 SVSSEYYIRL EEHGSPPEPL FPNDWDPLDP GVPAPQAPQA PSEVPQLVSE 651 700 ENSTTRP00000007455/1-1481 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 TWASPLFPAP RPFPAQSSAS GSFLLSGWDP EGRGAGETLA GDPAEVLGER ENSBTAP00000015942/1-1413 TWASPLFPAA RPFPAQSSAS GSFLLSGWDP EGRGAGETLA GDPAEVLGER 701 750 ENSTTRP00000007455/1-1481 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 GTAPWVEEEE EEEEGSSPGE DSSSLGGGPS RRGPLPCPLC SREGACSCLP ENSBTAP00000015942/1-1413 GAAPWA-EEE EEEEGSSPGE DSSSLGGGPS RRGPLPCPLC SREGACSCLP 751 800 ENSTTRP00000007455/1-1481 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 LERGDAVAGW GGHPALGCPH PPEDDSSLRA ERGSLADLPM APPASAPPEF ENSBTAP00000015942/1-1413 LERGDAVAGW GGHPALGCPH PPEDDSSLRA ERGSLADLPL NPPASAPPEF 801 850 ENSTTRP00000007455/1-1481 XXXXXXXXXX XXXXXXXXXX XXPPPPPPRA PADPAVSPDP PSAVASPGSG BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 LDPLMGAAAP QYPGRGPPPA PPPPPPPPRA PADPAASPDP PSAVASPGSG ENSBTAP00000015942/1-1413 LDPLMGAAAP QYPGRGPPPA PPPPPPPPRA PADPAVSPDP SSAVASPGSG 851 900 ENSTTRP00000007455/1-1481 LSSPGPKPGD SGYETETPFS PEGAFPGGGA AEEEGVPRPR APPEPPDPGA BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 LSSPGPKPGD SGYETETPFS PEGAFPGGGA AEEEGVPRPR APPEPPDPGA ENSBTAP00000015942/1-1413 LSSPGPKPGD SGYETETPFS PEGAFPGAGA AEEEGVPRPR APPEPPDPGA 901 950 ENSTTRP00000007455/1-1481 PRPPPDPGPL PLPGAREKPT FVVQVSTEQL LMSLREDVTR KLLGEKGAAA BACU002177/1-681 ---------- ---------- ---------- -MSLREDVTR KLLGEKGAAA bmy_06429T0/1-769 ---------- --------PT FVVQVSTEQL LMSLREDVTR KLLGEKGAAA ENSP00000270238/1-1489 PRPPPDPGPL PLPGPREKPT FVVQVSTEQL LMSLREDVTR NLLGEKGATA ENSBTAP00000015942/1-1413 PRPPPDPGPL PLPGAREKPT FVVQVSTEQL LMSLREDVTR NLLGEK---- 951 1000 ENSTTRP00000007455/1-1481 RETGPRRAAR GPGNREKAPG PSRGPTVLDS GKQAPSPQEG PSLPVNGVTV BACU002177/1-681 RDTGSRRAGR GPGNRERAPG PSRGPTVLDS GKQAPSPNGG LSLRVNGVTV bmy_06429T0/1-769 RDTGPRRAGR GPGNRERAPG PSRGPTVLDS GKQAPSPNGG LSLRVNGVTV ENSP00000270238/1-1489 RETGPRKAGR GPGNREKVPG LNRDPTVLGN GKQAPS---- LSLPVNGVTV ENSBTAP00000015942/1-1413 ---GPRKTGR GPGNRERALG PSPDPAVPES GKQAPSPNEG LSLPVNGVTV 1001 1050 ENSTTRP00000007455/1-1481 LENGEQRALG VEEKVAENGS PGSPEREEQV LANGELPPPR REEKVLENGG BACU002177/1-681 LENGEQRALG VEEKAAENGS PGSPEREEQV LANGELPPPR REEKVLENGG bmy_06429T0/1-769 LENGEQRALG VEEKAAENGS PGSPEREEQV LANGELPPPR REEKVLENGG ENSP00000270238/1-1489 LENGDQRAPG IEEKAAENGA LGSPEREEKV LENGELTPPR REEKALENGE ENSBTAP00000015942/1-1413 LENGGPRALG ADEKVAENGD PGSPEREEQV LANGELPPPR REETVLENGG 1051 1100 ENSTTRP00000007455/1-1481 LGSPAREEQV LVNGGLTPPK IEE-VSENGG LRLPRNPERL PETGPWRAPG BACU002177/1-681 LGSPEREEQV LVNGGLTPPK IEE-VSENGG LRLPRNPERL PETGPWRAPG bmy_06429T0/1-769 LGSPEREEQV LVNGGLTPPK IEE-VSENGG LRLPRNPERL PETGPWRAPG ENSP00000270238/1-1489 LRSPEAGEKV LVNGGLTPPK SEDKVSENGG LRFPRNTERP PETGPWRAPG ENSBTAP00000015942/1-1413 PGPPEREERV LVNGGLTSPK IEE-GSENGG LRLPRNPERL PETGPWRAPG 1101 1150 ENSTTRP00000007455/1-1481 PWEKMPESGA PAPMNGEPAP ETSLERALAP GAVVLALNGG ETAPGPTGPA BACU002177/1-681 PWEKMPESGA PAPMNGEPAP ETSLERALAP GAVALALNGG ETAPGPIGPA bmy_06429T0/1-769 PWEKMPESGA PAPMNGEPAP ETLLERALAP GAVALALNGG ETAPGPIGPA ENSP00000270238/1-1489 PWEKTPESWG PAPTIGEPAP ETSLERAPAP SAVVSSRNGG ETAPGPLGPA ENSBTAP00000015942/1-1413 PWEKMPESGA PAPTNGEPAP ETSLERAPAP GAVALALNGG ETAPGPAGPA 1151 1200 ENSTTRP00000007455/1-1481 LRSGVLEPGT ERRAPETGGA PRAPGAGRLD LGSGVRAPVG MGMAPGGGLG BACU002177/1-681 PRSGVPEPGT ERRAPETGGA PRAPGAGRLD LGSGVRAPVG MGMVPGGGLG bmy_06429T0/1-769 PRSGVPEPGT ERRALETGGA PRAPGAGRLD LGSGVRAPVG MGMAPGGGLG ENSP00000270238/1-1489 PKNGTLEPGT ERRAPETGGA PRAPGAGRLD LGSGGRAPVG TGTAPGGGPG ENSBTAP00000015942/1-1413 PRSGALEPGT ERRAPETGGA PRAPGAGRLD LGSGGQAPVG TGMAPGGGPG 1201 1250 ENSTTRP00000007455/1-1481 SGVDAKAGWV DSTRPQPPPP PL----EAQP TRPEPAPQRA RPEAASEGEP BACU002177/1-681 SGVDAKAGWV DSTRPQPPPP PL----EAQP TRPEPAPQRA RPEAASEGEP bmy_06429T0/1-769 SGVDAKAGWV DSTRPQPPPP PL----EAQP TRPEPAPQRA RPEAASEGEP ENSP00000270238/1-1489 SGVDAKAGWV DNTRPQPPPP PLPPPPEAQP RRLEPAPPRA RPEVAPEGEP ENSBTAP00000015942/1-1413 SGVDAKAGWA DSTRPQPPLP LL----EAQP RRPEPAPQRV RPEAASEGEP 1251 1300 ENSTTRP00000007455/1-1481 GVPDSRAGGD TAPNEDGDPP KPERKGPEMP RLFLDLGPPQ GNSEQIKAKL BACU002177/1-681 GVPDSRAGGD TAPNEDGDPP KPERKGPEMP RLFLDLGPPQ GNSEQIK--- bmy_06429T0/1-769 GVPDSRAGGD TAPNEDGDPP KPERKGPEMP RLFLDLGPPQ GNSEQIKAKL ENSP00000270238/1-1489 GAPDSRAGGD TALSGDGDPP KPERKGPEMP RLFLDLGPPQ GNSEQIKARL ENSBTAP00000015942/1-1413 GAPDSRAGGD TAPSGDGDPP KPERKGPEMP RLFLDLGPPQ GNSEQIKAKL 1301 1350 ENSTTRP00000007455/1-1481 SRLSLALPPL TLTPFPGPGP RRPPWEGVDA GAAGGEAGGA GASGPSEEDG BACU002177/1-681 ---------- ---------- ---------- ---------- ---------- bmy_06429T0/1-769 SRLSLALPPL TLTPFPGPGP RRPPWEGVDA GAAGGEAGGA GASGPSEEDG ENSP00000270238/1-1489 SRLSLALPPL TLTPFPGPGP RRPPWEGADA GAAGGEAGGA GAPGPAEEDG ENSBTAP00000015942/1-1413 SRLSLALPPL TLTPFPGPGP RRPPWEGADA GAAGGEAGGA GAPGPSEEDG 1351 1400 ENSTTRP00000007455/1-1481 EDEDEDEEED EEAAAAGALA GPRGPGRARA APVPVVVSSA DTDAARPLRG BACU002177/1-681 ---------- ------GAVA GPRGPGRARA APVPVVVSSA DADAARPLRG bmy_06429T0/1-769 EDEDEDEEED EEAAAAGAVA GPRGPGRARA APVPVVVSSA DADAARPLRG ENSP00000270238/1-1489 EDEDEDEEED EEAAAPGAAA GPRGPGRARA APVPVVVSSA DADAARPLRG ENSBTAP00000015942/1-1413 --EDEDEEED EEAAAAGAAA GPRGPGRARA APVPVVVSSA DADAARPLRG 1401 1450 ENSTTRP00000007455/1-1481 LLKSPRGADE PEDSELERKR KMVSFHGDVT VYLFDQETPT NELSVQGPPE BACU002177/1-681 LLKSPRGADE PEDSELERKR KMVSFHGDVT VYLFDQETPT NELSVQGPPE bmy_06429T0/1-769 LLKSPRGADE PEDSELERKR KMVSFHGDVT VYLFDQ---- ---------- ENSP00000270238/1-1489 LLKSPRGADE PEDSELERKR KMVSFHGDVT VYLFDQETPT NELSVQAPPE ENSBTAP00000015942/1-1413 LLKSPRGADE PEDSELERKR KMVSFHGDVT VYLFDQETPT NELSVQGPPE 1451 1500 ENSTTRP00000007455/1-1481 GDTDPST--- ---------- ---------- ---------- ---------- BACU002177/1-681 GDTDPSTXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 GDTDPST--- ---------- ---------- ---------- ---------- ENSBTAP00000015942/1-1413 GDTDPST--- ---------- ---------- ---------- ---------- 1501 1550 ENSTTRP00000007455/1-1481 ---------- ---------- ---------- ---------- ---------- BACU002177/1-681 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015942/1-1413 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSTTRP00000007455/1-1481 ---------- ---------- ---------- ---------- ---------- BACU002177/1-681 XXXXXXXXXX XXXXXXXXXX XXXXSRPPPV LLPLLRLACA GDPGAPRPGP bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015942/1-1413 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSTTRP00000007455/1-1481 ---------- ----PPAPPT LPHSATPGDG FPSNDSGFG- ----AGXFPL BACU002177/1-681 RRPARRPRGE LTPRRPDPPA PPEEGLRVES SVDDGAAATT THAASGEAPE bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 ---------- ----PPAPPT PPHPATPGDG FPSNDSGFGG SFEWAEDFPL ENSBTAP00000015942/1-1413 ---------- ----PPAPPT PPHPATPGDG FPSNDSGFGG SFEWAEDFPL 1651 1700 ENSTTRP00000007455/1-1481 --PPPGPPLC FSRFSVSPAL ETPGPPARAP DARPAGPVEN BACU002177/1-681 TGASPSPTMC QTGGPGPPPP SPPDGSPEPP DPLGAK---- bmy_06429T0/1-769 ---------- ---------- ---------- ---------- ENSP00000270238/1-1489 L-PPPGPPLC FSRFSVSPAL ETPGPPARAP DARPAGPVEN ENSBTAP00000015942/1-1413 L-PPPGPPLC FSRFSVSPAL ETPGPPARAP DARPAGTVLQ