KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:44 2014 Check: 00 .. Name: ENSP00000300584/1-963 Len: 970 Check: 2642 Weight: 1.00 Name: ENSBTAP00000015943/1-844 Len: 970 Check: 4876 Weight: 1.00 Name: bmy_13465T0/1-727 Len: 970 Check: 7765 Weight: 1.00 Name: BACU004850/1-468 Len: 970 Check: 9142 Weight: 1.00 Name: ENSTTRP00000015014/1-776 Len: 970 Check: 4885 Weight: 1.00 // 1 50 ENSP00000300584/1-963 MPGAGARAEE GGGGGEGAAQ GAAAEPGAGP AREPARLCGY LQKLSGKGPL ENSBTAP00000015943/1-844 ---------- ---------- ---------- ---------- ---------- bmy_13465T0/1-727 ---------- ---------- ---------- ---------- ---------- BACU004850/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015014/1-776 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000300584/1-963 RGYRSRWFVF DARRCYLYYF KSPQDALPLG HLDIADACFS YQGPDEAAEP ENSBTAP00000015943/1-844 ---------- ---------- ---------- ---------- ---------- bmy_13465T0/1-727 ---------- ---------- ---------- ---------- ---------- BACU004850/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015014/1-776 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000300584/1-963 GTEPPAHFQV HSAGAVTVLK APNRQLMTYW LQELQQKRWE YCNSLDMVKW ENSBTAP00000015943/1-844 ---------- ---------- APNRQLMTYW LQELQQKRWE YCNSLDVVKW bmy_13465T0/1-727 ---------- ---------- ---------- ---------- ---------- BACU004850/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015014/1-776 ---------- ---------- ------MTYW LQELQQKRWE YCNSLDMVKW 151 200 ENSP00000300584/1-963 DSRTSPTPGD FPKGLVARDN TDLIYPHPNA SAEKARNVLA VETVPGELVG ENSBTAP00000015943/1-844 DSRTSPTPGD FSQGLVARDN TDLINLHSNA SAEKARNVLA VEAAPGELVG bmy_13465T0/1-727 ---------- ---------- ---------- ---------- ---------- BACU004850/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015014/1-776 DSRTSPTPGD FSKGLVARDN TDLINLHPNA SAEKARNVLA VETAPGELVG 201 250 ENSP00000300584/1-963 EQAANQPAPG HPNSINFYSL KQWGNELKNS MSSFRPGRGH NDSRRTVFYT ENSBTAP00000015943/1-844 EQAANQPAPG PPNSINF-SF KQWGTELRNS MSSFRPGKGH NDSRRSVFYT bmy_13465T0/1-727 ---------- ---------- ---------- MSSFRPGRGH NDSRRSVFYT BACU004850/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015014/1-776 EQAANQPAPG HPNSINF-SL KQWGTELKNS MSSFRPGRGH NDSRRSVFYT 251 300 ENSP00000300584/1-963 NEEWELLDPT PKDLEESIVQ EEKKKLTPEG NK---GVTGS GFPFDFGRNP ENSBTAP00000015943/1-844 NEEWELLEPS PKELEESMVQ EERKKQAPEG NK---GITGS GFPFDFGRIP bmy_13465T0/1-727 SEEWELLDPS PKDLEESTAQ EERKKQIPEG NK---GVTGS GFPFDFGRIP BACU004850/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015014/1-776 NEEWELLEPS PKDLEESMVQ EERKKQIPEG NKXXXXXXXX XXXXXXXXXX 301 350 ENSP00000300584/1-963 YKGKRPLKDI IGSYKNRHSS GDPSSEGTSG SGSVSIRKPA SEMQLQVQSQ ENSBTAP00000015943/1-844 YKGKRPLKEM IGSYKNRHSI GDPSPEVPSG SGSAS--KPA SEMQLLVQNQ bmy_13465T0/1-727 YKGKRPLKDM IGSYKNRHSS GDPSAEGPSG SGSTS--KLA SEMQLQVQNQ BACU004850/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015014/1-776 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX--XXX XXXXXXXXXX 351 400 ENSP00000300584/1-963 QEELEQLKKD LSSQKELVRL LQQTVRSSQY DKYFTSSRLC EGVPKDTLEL ENSBTAP00000015943/1-844 QEELERLRKD LASQKELVRL LQQTVRSSQY DKYFTSSRLC DGVPQDTLGL bmy_13465T0/1-727 QEELERLRKD LSSQKELVRL LQQTVRSSQY DKYFTSSRLC EGVPQDTLGL BACU004850/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015014/1-776 XXXXXKVKED LSSQKELVRL LQQTVRSSQY DKYFTSSRLC EGVPQDTLGL 401 450 ENSP00000300584/1-963 LHQKDDQILG LTSQLERFSL EKESLQQEVR TLKSKVGELN EQLGMLMETI ENSBTAP00000015943/1-844 LHQKDEQILG LTNQLERFNQ EKDSLQQEVR MLKSKVGELS ERLGMLMETI bmy_13465T0/1-727 LHQKDDQILG LTSQLERFSQ EKESLQQEVR TLKNKVGELS EQLGMLMETI BACU004850/1-468 ---------- ---------- ---------- ---------- ----MLMETI ENSTTRP00000015014/1-776 LHQKDDQILG LTSQLERFNQ EKESLQQEVR TLKNKVGELS EQLGMLMETI 451 500 ENSP00000300584/1-963 QAKDEVIIK- ---LSEGEGN GPPPTVAPSS PSVVPVARDQ LELDRLKDNL ENSBTAP00000015943/1-844 QAKDEVIMKL SRQLSECEGS ASSPTCIPGS PVAAPAGRDQ LELDWLKDNL bmy_13465T0/1-727 QAKDEVIMKL SRQLSECEGS ISSPTSMPSS PVALPTARDQ LELDRLKDNL BACU004850/1-468 QAKDEVIMKL SRQLSECEGS VSSPTSMPSS PVALPTARDQ LELDRLKDNL ENSTTRP00000015014/1-776 QAKDEVIMKL SRQLSECEGS ASSPTSMPSS PVALPTARDQ LELDRLKDNL 501 550 ENSP00000300584/1-963 QGYKTQNKFL NKEILELSAL RRNAERRERD LMAKYSSLEA KLCQIESKYL ENSBTAP00000015943/1-844 QGYKTQNKFL NKEILELAAL RRNAERRERD LMAKYSSLEA KLCQIESKYL bmy_13465T0/1-727 QGYKTQNKFL NKEILELSAL RRNAERRERD LMAKYSSLEA KLCQIESKYL BACU004850/1-468 QGYKTQNKFL NKEILELSAL RRNAERRERD LMAKYSSLEA KLCQIESKYL ENSTTRP00000015014/1-776 QGYKTQNKFL NKEILELSAL RRNAERRERD LMAKYSSLEA KLCQIESKYL 551 600 ENSP00000300584/1-963 ILLQEMKTPV CSEDQGPTRE VIAQLLEDAL QVESQEQPEQ AFVKPHLVSE ENSBTAP00000015943/1-844 ILLQEMKTPV CSEEQGPARD VIAQLLEDAL QVESPEHPEQ AFIKPHLVSE bmy_13465T0/1-727 ILLQEMKTPV CSEEQGPSRD VIAQLLEDAL QVESPEHPEQ AFVKPHLV-- BACU004850/1-468 ILLQEMKTPV CSEEQGPSRD VIAQLLEDAL QVESPEHPEQ AFVKPHLVSE ENSTTRP00000015014/1-776 ILLQEMKTPV CSEEQGPSRD VIAQLLEDAL QVESPEHPEQ AFVKPHLVSE 601 650 ENSP00000300584/1-963 YDIYGFRTVP EDDEEEKLVA KVRALDLKTL YLTENQEVST GVKWENYFAS ENSBTAP00000015943/1-844 YDIYGFKTVP EDDEEEKLVA RVRALDLKTL HLTENQEVST GVKWENHFAS bmy_13465T0/1-727 ------RTVP EDDEEEKLVA KVRALDLKTL YLTENQEVST GVKWENYFAS BACU004850/1-468 YDIYGFRTVP EDDEEEKLVA KVRALDLKTL YLTENQEVST GVKWENYFAS ENSTTRP00000015014/1-776 YDIYGFRTVP EDDEEEKLVA KVRALDLKTL YLTENQEVST GVKWENYFAS 651 700 ENSP00000300584/1-963 TVNREMMCSP ELKNLIRAGI PHEHRSKVWK WCVDRHTRKF KDNTEPGHFQ ENSBTAP00000015943/1-844 TVNREMACSP ELKNLVRAGI PHEHRSKVWK WCVDRHIKKF KDSTQPGYFQ bmy_13465T0/1-727 TVNREMMCSP ELKNLIRAGI PHEHRSKVWK WCVDLHTRKF KDSTKPGYFQ BACU004850/1-468 TVNREMMCSP ELKNLIRAGI PHEHRSKVWK WCVDLHTRKF KDSTKPGYFQ ENSTTRP00000015014/1-776 TVNREMMCSP ELKNLIRAGI PHEHRSKVWK WCVDLHTRKF KDSIKPGYFQ 701 750 ENSP00000300584/1-963 TLLQKALEKQ NPASKQIELD LLRTLPNNKH YSCPTSEGIQ KLRNVLLAFS ENSBTAP00000015943/1-844 TLLQKALEKQ NPASKQIELD LLRTLPNNKH YSCPTSEGIQ KLRNVLLAFS bmy_13465T0/1-727 TLLQKALEKQ NPASKQIELD LLRTLPNNKH YSCPTSEGIQ KLRNVLLAFS BACU004850/1-468 TLLQKALEKQ NPASKQIELD LLRTLPNNKH YSCPTSEGIQ KLRNVLLAFS ENSTTRP00000015014/1-776 TLLQKALEKQ NPASKQIELD LLRTLPNNKH YSCPTSEGIQ KLRNVLLAFS 751 800 ENSP00000300584/1-963 WRNPDIGYCQ GLNRLVAVAL LYLEQEDAFW CLVTIVEVFM PRDYYTKTLL ENSBTAP00000015943/1-844 WRNPDIGYCQ GLNRLVAVAL LYLEQEDAFW CLVTIVEVFM PRDYYTKTLL bmy_13465T0/1-727 WRNPDIGYCQ GLNRLVAVAL LYLEQEDAFW CLVTIVEVFM PRDYYTKTLL BACU004850/1-468 WRNPDIGYCQ GLNRLVAVAL LYLEQEDAFW CLVTIVEVFM PRDYYTKTLL ENSTTRP00000015014/1-776 WRNPDIGYCQ GLNRLVAVAL LYLEQEDAFW CLVTIVEVFM PRDYYTKTLL 801 850 ENSP00000300584/1-963 GSQVDQRVFR DLMSEKLPRL HGHFEQYKVD YTLITFNWFL VVFVDSVVSD ENSBTAP00000015943/1-844 GSQVDQRVFR DLMSEKLPRL HAHFEQYKVD YTLITFNWFL VVFVDSVVSD bmy_13465T0/1-727 GSQVDQRVFR DLMSEKLPRL HAHFEQYKVD YTLITFNWFL VVFVDSVVSD BACU004850/1-468 GSQVDQRVFR DLMSEKLPRL HAHFEQYKVD YTLITFNWFL VVFVDSVVSD ENSTTRP00000015014/1-776 GSQVDQRVFR DLMSEKLPRL HAHFEQYKVD YTLITFNWFL VVFVDSVVSD 851 900 ENSP00000300584/1-963 ILFKIWDSFL YEGPKVIFRF ALALFKYKEE EILKLQDSMS IFKYLRYFTR ENSBTAP00000015943/1-844 VLFKIWDSFL YEGPKVIFRF ALALFKYKEE EILKLQDSMS IFKYLRYFTR bmy_13465T0/1-727 ILFKIWDSFL YEGPKVIFRF ALALFKYKEE EILKLQDSMS IFKYLRYFTR BACU004850/1-468 ILFKIWDSFL YEGPKVIFRF ALALFKYKEE EILKLQDSMS IFKYLRYFTR ENSTTRP00000015014/1-776 ILFKIWDSFL YEGPKVIFRF ALALFKYKEE EILKLQDSMS IFKYLRYFTR 901 950 ENSP00000300584/1-963 TILDARKLIS ISFGDLNPFP LRQIRNRRAY HLEKVRLELT ELEAIREDFL ENSBTAP00000015943/1-844 TILDARKLIG ISFGDLNPFP LRQIRNRRAY HLEKVRLELT ELEAIREDFL bmy_13465T0/1-727 TILDARKLIG ISFGDLNPFP LRQIRNRRTY HLEKVRLELT ELEAIREDFL BACU004850/1-468 TILDA----- -SWQLLWP-- ---------- ---------- ---------- ENSTTRP00000015014/1-776 TILDA----- ---------- ---------- ---------- ---------- 951 1000 ENSP00000300584/1-963 RERDTSPDKG ELVSDEEEDT ENSBTAP00000015943/1-844 RERDTSPDKG ELVSDEEEDT bmy_13465T0/1-727 RERDTSPDKG ELVSDEEEDS BACU004850/1-468 ---------- ---------- ENSTTRP00000015014/1-776 ---------- ----------