KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:57:46 2014 Check: 00 .. Name: ENSBTAP00000015961/1-872 Len: 874 Check: 6694 Weight: 1.00 Name: ENSTTRP00000009062/1-828 Len: 874 Check: 264 Weight: 1.00 Name: bmy_13744T0/1-790 Len: 874 Check: 6751 Weight: 1.00 Name: BACU002498/1-807 Len: 874 Check: 5243 Weight: 1.00 // 1 50 ENSBTAP00000015961/1-872 MEPPAVPSER SLSLSLPGPR EGQATLKPPP QHLWRQPRTP IRIQQRGYSD ENSTTRP00000009062/1-828 MEPPAVPSER SLSLSLPGPR DGQATLKPPP QHLWRQPRTP IRIQQRGYSD bmy_13744T0/1-790 MRSSAAPRAR ---------- -------PRP PALALPPA-- ---VHFSFSD BACU002498/1-807 MRSSAAPRAR ---------- -------PRP PALALPPAGP ESLVHFSFSD 51 100 ENSBTAP00000015961/1-872 SAERAEPERP PHRPIERADA VDTGDRPGLR TSRMSWPSSF H--GSGSGSA ENSTTRP00000009062/1-828 SAERAEPERP AHRPIERADA VDTGDRPGLR TSRMSWPSSF HGTGTGSGSA bmy_13744T0/1-790 EDT------- ---------- ---------- ----CWYPP- ---------- BACU002498/1-807 EDT------- ---------- ---------- ----CWYPP- ---------- 101 150 ENSBTAP00000015961/1-872 GGGSCRRLEA ENGPTPSPGR SPLDSQASPG LVLHAGAATS QRRESFLYRS ENSTTRP00000009062/1-828 GGGSCRRLEA ENGPTPSPGR SPLDSQASPG LVLHAGAATS QRRESFLYRS bmy_13744T0/1-790 --GRSVSLEA ENGPTPSPGR SPLDSQASPG LVLHAGAATS QRRESFLYRS BACU002498/1-807 --GRSVSLEA ENGPTPSPGR SPLDSQASPG LVLHAGAATS QRRESFLYRS 151 200 ENSBTAP00000015961/1-872 DSDYDMSPKT MSRNSSVTSE AHAEDLIVTP FAQVLASLRS VRSNFSLLTN ENSTTRP00000009062/1-828 DSDYDMSPKT MSRNSSVTSE AHAEDLIVTP FAQVLASLRS VRSNFSLLTN bmy_13744T0/1-790 DSDYDMSPKT MSRNSSVTSE AHAEDLIVTP FAQGEAEIGE DQA----VVG BACU002498/1-807 DSDYDMSPKT MSRNSSVTSE AHAEDLIVTP FAQVLASLRS VRSNFSLLTN 201 250 ENSBTAP00000015961/1-872 VPIPSNKRSP LGGPTPVCKA TLSEETCQQL ARETLEELDW CLEQLETMQT ENSTTRP00000009062/1-828 VPIPSNKRSP LGGPTPICKA TLSEETCQQL ARETLEELDW CLEQLETMQT bmy_13744T0/1-790 APFLC-RRSP LGGPTPVCKA TLSEETCQQL ARETLEELDW CLEQLETMQT BACU002498/1-807 VPIPSNKRSP LGGPTPVCKA TLSEETCQQL ARETLEELDW CLEQLETMQT 251 300 ENSBTAP00000015961/1-872 YRSVSEMASH KFKRMLNREL THLSEMSRSG NQVSEYISTT FLDKRNEVEI ENSTTRP00000009062/1-828 YRSVSEMASH KFKRMLNREL THLSEMSRSG NQVSEYISTT FLDKQNEVEI bmy_13744T0/1-790 YRSVSEMASH KFKRMLNREL THLSEMSRSG NQVSEYISTT FLDKQNEVEI BACU002498/1-807 YRSVSEMASH KFKRMLNREL THLSEMSRSG NQVSEYISTT FLDKQNEVEI 301 350 ENSBTAP00000015961/1-872 PSPTIKDREK QQAPRQRPCQ QPPAPGPQLQ PMSQITGVKK LMHSSSLNDS ENSTTRP00000009062/1-828 PSPAMKDREK QQVPRQRPSQ QPPPPGPQFQ PMSQITGVKK VVHSSSLNDS bmy_13744T0/1-790 PSPAMKDREK QQVPRQRPSQ QPPPPGPQFQ PMSQITGVKK LMHSSSLNDS BACU002498/1-807 PSPAMKDREK QQVPRQRPSQ QPPPPGPQFQ PMSQITGVKK LMHSSSLNDS 351 400 ENSBTAP00000015961/1-872 SMPRFGVKTD QEERLAQELE NLNKWGLNIF RVSDYAGGRS LSCIMYTIFQ ENSTTRP00000009062/1-828 SIPRFGVNTD QEELLAQELE NLNKWGLNIF CVSDYAGGRS LSCIMYTIFQ bmy_13744T0/1-790 SIPRFGVKTD QEELLAQELE NLNKWGLNIF CVSDYAGGRS LSCIMYTIFQ BACU002498/1-807 SIPRFGVKTD QEELLAQELE NLNKWGLNIF CVSDYARGRS LSCIMYTIFQ 401 450 ENSBTAP00000015961/1-872 ERDLLKKFRI PVDTMVTYML TLEDHYHPDV AYHNSLHAAD VLQSTHVLLA ENSTTRP00000009062/1-828 ERDLLKKFRI PVDTMVTYML TLEDHYHPDV AYHNSLHAAD VLQSTHVLLA bmy_13744T0/1-790 ERDLLKKFRI PVDTMVTYML TLEDHYHPNV AYHNSLHAAD VLQSTHVLLA BACU002498/1-807 ERDLLKKFRI PVDTMVTYML TLEDHYHPNV AYHNSLHAAD VLQSTHVLLA 451 500 ENSBTAP00000015961/1-872 TPALDAVFTD LEILAALFAA AIHDVDHPGV SNQFLINTNS ELALMYNDES ENSTTRP00000009062/1-828 TPALDAVFTD LEILAALFAA SIHDVDHPGV SNQFLINTNS ELALMYNDES bmy_13744T0/1-790 TPALD----- --VSIAWPPS SIHDVDHPGV SNQFLINTNS ELALMYNDES BACU002498/1-807 TPALDAVFTD LEILAALFAA SIHDVDHPGV SNQFLINTNS ELALMYNDES 501 550 ENSBTAP00000015961/1-872 VLENHHLAVG FKLLQEDNCD IFQNLGKRQR QSLRKMVIDM VLATDMSKHM ENSTTRP00000009062/1-828 VLENHHLAVG FKLLQEDNCD IFQNLSKRQR QSLRKMVIDM VLATDMSKHM bmy_13744T0/1-790 VLENHHLAVG FKLLQEDNCD IFQNLSKRQR QSLRKMVIDM VLATDMSKHM BACU002498/1-807 VLENHHLAVG FKLLQEDNCD IFQNLSKRQR QSLRKMVIDM VLATDMSKHM 551 600 ENSBTAP00000015961/1-872 TLLADLKTMV ETKKVTSSGV LLLDNYSDRI QVLRNMVHCA DLSNPTKPLE ENSTTRP00000009062/1-828 TLLADLKTMV ETKKVTSSGV LLLDNYADRI QVLRNMVHCA DLSNPTKPLE bmy_13744T0/1-790 TLLADLKTMV ETKKVTSSGV LLLDNYADRI QVLRNMVHCA DLSNPTKPLE BACU002498/1-807 TLLADLKTMV ETKKVTSSGV LLLDNYADRI QVLRNMVHCA DLSNPTKPLE 601 650 ENSBTAP00000015961/1-872 LYRQWTDRIM AEFFQQGDRE RERGMEISPM CDKHTASVEK SQVGFIDYIV ENSTTRP00000009062/1-828 LYRQWTDRIM AEFFQQGDRE RERGMEISPM CDKHTASVEK SQVGFIDYIV bmy_13744T0/1-790 LYRQWTDRIM AEFFQQGDRE RERGMEISPM CDKHTASVEK SQVGFIDYIV BACU002498/1-807 LYRQWTDRIM AEFFQQGDRE RERGMEISPM CDKHTASVEK SQVGFIDYIV 651 700 ENSBTAP00000015961/1-872 HPLWETWADL VHPDAQEILD TLEDNRDWYY SAIRQSPSPP PEEEPGGPGH ENSTTRP00000009062/1-828 HPLWETWADL VHPDAQEILD TLEDNRDWYY SAIRQSPSPP PEEEPGGPGH bmy_13744T0/1-790 HPLWETWADL VHPDAQEILD TLEDNRDWYY SAIRQSPSPP PEEEPGGPGH BACU002498/1-807 HPLWETWADL VHPDAQEILD TLEDNRDWYY SAIRQSPSPP PEEEPGGPGH 701 750 ENSBTAP00000015961/1-872 PPPPDKFQFE LTLDEEEEEE VCTAPGAVAI QELYMAQDAS PPEDPLEVDG ENSTTRP00000009062/1-828 PPPPDKFQFE LTLEEEEEEE VSTAPGATEV QELSTAQDVF PAEEPLEVM- bmy_13744T0/1-790 PPPLDKFQFE LTLEEEEEEE VSTAPGATEV QELSTAQDVF PAEEPLEVDG BACU002498/1-807 PPPLDKFQFE LTLEEEEEEE VSTAPGATEV QELSTTQDVF TAEEPLEVDG 751 800 ENSBTAP00000015961/1-872 QDPSAEVEIE EMYLTRQVDS TGSVAAGQDV SVPQGASVDV CVGCRNIPAL ENSTTRP00000009062/1-828 QDQSTEVEVE EMYLTQQADS ADSVAEGQDA STPPSAS--- -VSCGSPPAL bmy_13744T0/1-790 QDQSTEVEVE EMYLTQQADS ADSVAKGQDA SMPPDAS--- -VGCSSPPAL BACU002498/1-807 QDQSTEVEVE EMYLTQQADS ADSVAKGQDA STPPDAS--- -VGCSSPPAL 801 850 ENSBTAP00000015961/1-872 SPNSLAPLAL RTPPPPEDDP GLLGLPSMAA EVGAQKEHQA AKRACCACTG ENSTTRP00000009062/1-828 SPESLPLPVL RTPLLSQEDP GFLGLPSLAA EVG------- ---------- bmy_13744T0/1-790 SPESLLLPVL RTPPPPEEDP GLLGLPSMAA EVGAQKEDQA AKRACCACTG BACU002498/1-807 SPESLPLPVL RTPPPPEEDP GLLGLPSTAA EVGAQKEDQA AKRACCACTG 851 900 ENSBTAP00000015961/1-872 TAGEDPTPGA LPAPGAWGSA GAPQ ENSTTRP00000009062/1-828 ---------- ---------- ---- bmy_13744T0/1-790 TSGEDPS--T LPAPGGWGSA GGPT BACU002498/1-807 TSGEDPP--T LPAPGGWGSA GGPT