KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:47 2014 Check: 00 .. Name: ENSTTRP00000009736/1-745 Len: 1352 Check: 3049 Weight: 1.00 Name: ENSP00000325674/1-746 Len: 1352 Check: 1108 Weight: 1.00 Name: ENSBTAP00000015965/1-739 Len: 1352 Check: 7339 Weight: 1.00 Name: bmy_05277T0/1-1352 Len: 1352 Check: 3568 Weight: 1.00 Name: BACU018096/1-1122 Len: 1352 Check: 2180 Weight: 1.00 // 1 50 ENSTTRP00000009736/1-745 ---------- ---------- ---------- ---------- ---------- ENSP00000325674/1-746 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015965/1-739 ---------- ---------- ---------- ---------- ---------- bmy_05277T0/1-1352 MSQWWEYPAL PRGPGERAIL KAKAICGGGR TGRLAKPAGP RRRLQLRGAP BACU018096/1-1122 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009736/1-745 ---------- ---------- -MDSATRDKM QPALPPGPEW PEQERAEQLA ENSP00000325674/1-746 ---------- ---------- -MDSAAKDEM QPALSPGPEW PEQERAEQLA ENSBTAP00000015965/1-739 ---------- ---------- -MDSAARDKT QPALPTGLEW PEQERAEQLA bmy_05277T0/1-1352 TLLALTWTFA PTPTSTPAPP AMDSAARDKM QPALPPGPEW PEQERAEQLA BACU018096/1-1122 ---------- ---------- -MDSAARDKM QPALPSGPEW PEQERAEQLA 101 150 ENSTTRP00000009736/1-745 RGAALKWASG IFYRPEQLAR LGQYRSREVQ RTCSLEARIK SVVQSYLEGV ENSP00000325674/1-746 RGAALKWASG IFYRPEQLAR LGQYRSREVQ RTCSLESRLK SVMQSYLEGV ENSBTAP00000015965/1-739 RGAALKWASG IFYRPEQLAR LGQYRNREVQ RTCSLEARIK SVVQSYLEGV bmy_05277T0/1-1352 RGAALKWASG IFYRPEQLAR LGQYRSREVQ RTCSLEARIK SVVQSYLEGV BACU018096/1-1122 RGAALKWASG IFYRPEQLAR LGQYRSREVQ RTCSLEARIK SVVQSYLEGV 151 200 ENSTTRP00000009736/1-745 KTGVRQLAWA LEAVQGAREA LGQAHGLLWG MAEAAQTLEP LREQVVQHKQ ENSP00000325674/1-746 QTGVWQLAQA IEVVQGTREA LSQARGLLQG MSQALQTLEP LRERVAQHKQ ENSBTAP00000015965/1-739 KTGVWQLAQA LEAVQGAREA LGQARGLLRD MAEAAQTLEP LREQVVEHKQ bmy_05277T0/1-1352 KTGVRQLAWA LEAVQGAREA LGQAHGLLQG MAEAAQTLEP LREQVVQHKQ BACU018096/1-1122 KTGVRQLAWA LEAVQGAREA LGQAHVLLQG MAEAAQTLEP LREQVVQHKQ 201 250 ENSTTRP00000009736/1-745 LQAMSQLLPR LRAVPAALAH TQTLIDAQRL LEAYVSLREL EQLQEETWAP ENSP00000325674/1-746 LQALSHLLPR LRAVPAAVSH TQTLIDGQQF LEAYVSLREL EQLREDTWAP ENSBTAP00000015965/1-739 LQALSQLLPR LRAVPAAVAH TQTLIDAQRL LEAYVSLREL EQLQEETCVP bmy_05277T0/1-1352 LQAMSQLLPR LRAVPAALAH TQTLIDAQRL LEAYVSLREL EQLQEETWAP BACU018096/1-1122 LQAMSHLLPR LRAVPAALAH TQTLIDAQRL LEAYVSLWEL EQLQEETWAP 251 300 ENSTTRP00000009736/1-745 LGGLELPVFE GLGPLAEALG QAVEAAAGAA GRLAREDPAL LVAAMRVAEV ENSP00000325674/1-746 LGGLELPVFQ GLDLLFEALG QAVEAAAGAA GKLAREDPAL LVAAVRVAEV ENSBTAP00000015965/1-739 LGGLELPVFE GLGPLAEALG QAVEAAAGAA GQLARENPAL LVAAVRVAEV bmy_05277T0/1-1352 LGGLELPVFE GLGPLAKALG QAVEAAAGAA GRLAREDPAL LVAAMRVAEV BACU018096/1-1122 LGGLELPVFE GLGPLAEALG QAVEAAAGAA GRLAREDPAL LVAAMRVAEV 301 350 ENSTTRP00000009736/1-745 DAGRTTSLEQ AARDWRQRCL RALQEGLEQI HFGTPLQPGP GALAEWLEAL ENSP00000325674/1-746 ETGRTTPLGQ VPRDWRQRCL RALQEGLEQA HFGSPLLPAP GALPGWLEAL ENSBTAP00000015965/1-739 DAGCTTSLEQ APRDWRQRCL RALQQGLERV HFGTSLQPGP GELAKWLEAL bmy_05277T0/1-1352 DAGRTTSLEQ AARDWRQRCL RALQEGLERI HFGTPLQPGP GALAEWLEAL BACU018096/1-1122 DAGRTTSLEQ AARDWRQRCL RALQEGLEQI HFGTPLQPGP GALAEWLEAL 351 400 ENSTTRP00000009736/1-745 RVALPAELAA AEALVAPCCP PHYNVVRLWA HTLHSGLRRC LQQLLEGPQL ENSP00000325674/1-746 RVALPVELAT AEALVAPCCP PQYNVVQLWA HTLHSGLRRS LQNLLAGPEL ENSBTAP00000015965/1-739 RVALPAELAM AEALVAPCCP PHYKVVQLWA HTLHGGLRRC LQQLLEGPEL bmy_05277T0/1-1352 RVALPAELAA AEALVAPCCP PHYNVVRLWA HTLHSGLRRC LQQLLEGPQL BACU018096/1-1122 RVALPAELAA AEALVAPCCP PHYNVVRLWA HTLHSGLRRC LQQLLEGPQL 401 450 ENSTTRP00000009736/1-745 EAADAFTLLH WALHVYLGPE MMGSLELGPE ADVSDLEPLL TLENIEQLEA ENSP00000325674/1-746 EAADAFALLH WALHVYLGQE MMGSLELGPE ADVSQLEPLL TLENIEQLEA ENSBTAP00000015965/1-739 EEADTFTLLH WVLHVYQGPE MMGSLELGPE ADVSDLEPLL TLENIEQLEA bmy_05277T0/1-1352 EAADAFTLLH WALHVYLGPE MMGSLELGPE ADVSDLEPLL TLENIEQLET BACU018096/1-1122 EAADAFTLLH WALHVYLGPE MMGSLELGPE ADVSDLEPLL TLENIEQLET 451 500 ENSTTRP00000009736/1-745 IFVAKVQXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000325674/1-746 TFVANIQASV SQWLQNALDG EVAEWGREHG PNTDPSGSYY SPMPAIVLQI ENSBTAP00000015965/1-739 TFVAKVQAKV AQWLQKALDG EVVEWGREQE PDTDLSGFYH SPLPAIVLQI bmy_05277T0/1-1352 IFVAKVQASV AQWLQKALDG DVAEWGREQE PDTDPSGFYH SPMPAIVLQI BACU018096/1-1122 IFVAKVQASV AQWLQKALDG DVAEWGREQE PDTDPSGFYH SPMPAIVLQI 501 550 ENSTTRP00000009736/1-745 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000325674/1-746 LEENIRVASL VSESLQQRVH GMALSELGTF LRSFSDALIR FSRDHFRGKS ENSBTAP00000015965/1-739 LEENIRVTRI VSVSLEQRVH GMALSELSAF LRSFTDALIR FSRDHLRGEA bmy_05277T0/1-1352 LEENIRVTRM VSESLQRRVH GMALSELSAF LRSFSDALIR FSRDHLRGEA BACU018096/1-1122 LEENIRVTRM VSESLQRRVH GMALSELSAF LRSFSDALIR FSRDHLRGEA 551 600 ENSTTRP00000009736/1-745 XXXXXXXXXX XXXXXXXXXX SSVSVLQPDW VAPGALAPVE AALDELQRRI ENSP00000325674/1-746 MAPHYVPYLL AALNHKSALS SSVSVLQLDG APSGALAPVE AALDELQRRI ENSBTAP00000015965/1-739 VVPHYVPYLL ATLNHQLALS SSVSVLQPKW VVPGVLAPVE AELDKLQKRI bmy_05277T0/1-1352 TAPHYVPYLL ATLNHQSALS SSVSVLQPDW VAPGALAPVE AALDELQRRI BACU018096/1-1122 TAPHYVPYLL ATLNHQSALS SSVSVLQPDW VAPGALAPVE AALDELQRRI 601 650 ENSTTRP00000009736/1-745 CRLVLEALLA ELQPLFAALP SRRWLSSPEL LDDVCERTAS FCQDFRHVRD ENSP00000325674/1-746 YRLVLEALQA ELQPLFADLP SRQWLSSPEL LQSVCERTGR FCRDFWRVRN ENSBTAP00000015965/1-739 CRLVLEALLA ELQPLFAALP SRRWLSSPEL LDDVCKRTAR FCQNFQHVRN bmy_05277T0/1-1352 CRLVLEALLA ELQPLFAALP SRRWLSSPEL LDDVCERTAS FCQDFRHVRD BACU018096/1-1122 CLLVLEALLA ELQPLFAALP SRRWLSSPEL LDDVCERTAS FCQDFRHVRD 651 700 ENSTTRP00000009736/1-745 PAVQLLLAEA ERTVVLQYPS ALMQGRLVCR GADERTQAAE RLRHDAAQLR ENSP00000325674/1-746 PTVQLLLAEA ERAVVLQYLS ALMQGRLVCR GADERTQAAE RLRHDAAQLQ ENSBTAP00000015965/1-739 PAVQLLLVEA ERTVVLQYLS ALMQGRLVCR GADERTQAAE RMQHDAAQLQ bmy_05277T0/1-1352 PAVQLLLAEA ERTVVLQYLR ALMQGRLVCR GADERTQAAE RLRHDAAQLR BACU018096/1-1122 PAVQLLLAEA ERTVVLQYLR ALMQGRLVCR GADERTQAAE RLRHDAAQLR 701 750 ENSTTRP00000009736/1-745 ELFL------ ------GL-- -------GLE ESVQCAPVLL ALRELLNLRD ENSP00000325674/1-746 QLFL------ ------SL-- -------GLE ENAHCAPVLL ALRELLNLRD ENSBTAP00000015965/1-739 ELFL------ ------GL-- -------GLE ESVQCVPVLL ALKELLNLRD bmy_05277T0/1-1352 ELFLDGRESQ WLGRGRGLER DQPRRVQGLE ESVQCAPVLL ALRELLNLRD BACU018096/1-1122 ELFL------ ------GL-- -------GLE ESVQCAPVLL ALRELVNLRD 751 800 ENSTTRP00000009736/1-745 PTLLGLEVAG LRQQFPD--- ---------- ---------- ---------- ENSP00000325674/1-746 PALLGLEVAG LRQQFPD--- ---------- ---------- ---------- ENSBTAP00000015965/1-739 PTLLGLEVAG LRQQFPD--- ---------- ---------- ---------- bmy_05277T0/1-1352 PTLLGLEVAG LRQQFPDRGS RLRPLGPARG RVPRAAPGRT QLSAGRPAAL BACU018096/1-1122 PTLLGLEVAG LRQQFPD--- ---------- ---------- ---------- 801 850 ENSTTRP00000009736/1-745 ---------- ---------- ---------- ---------- ---------- ENSP00000325674/1-746 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015965/1-739 ---------- ---------- ---------- ---------- ---------- bmy_05277T0/1-1352 APSGWTRTLQ PRASTRTPTV LLPPLGVLCL TPGCPQNKAT VPVRLNCVRW BACU018096/1-1122 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000009736/1-745 ---------- ---------- ---------- ---------- ---------- ENSP00000325674/1-746 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015965/1-739 ---------- ---------- ---------- ---------- ---------- bmy_05277T0/1-1352 RRGDRNKSPR EEVDRVGSWS DPAGCDHQDR MVLDSGAQVY EQAPPSPPSS BACU018096/1-1122 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000009736/1-745 ---------V SEDHVSALLD LRGDVSREQR LAALSSLQAG PQPSP----- ENSP00000325674/1-746 ---------V SEDHVSALLG LRGDLSREQH LAALSSLQAA LPPSP----- ENSBTAP00000015965/1-739 ---------V SEDHVSALLD LRGDVSREQR LAALSSLRAG PQPSP----- bmy_05277T0/1-1352 PSSLGHRLRP SDRDGTALYP WPRSLALPLA LSVPSALRPR PELQPFSELH BACU018096/1-1122 -----VRLRP SDRDGTALYP WPRSLALPLA LSVPSALRPR PELQPFSELH 951 1000 ENSTTRP00000009736/1-745 ---------- ---------- ---------- ---------- ---------- ENSP00000325674/1-746 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015965/1-739 ---------- ---------- ---------- ---------- ---------- bmy_05277T0/1-1352 LGHCGHMRRS ESTYTVNSIG RRGGSTQGRA PPGRGRDPGG GTLRPAASLP BACU018096/1-1122 LGHRGHMRRS ESTYTVNSIG RRGGSTQGRA PPGQGRDPGG GTLRPAASLP 1001 1050 ENSTTRP00000009736/1-745 -------PAG GRA------L FSLVPA---- ---------- ---------- ENSP00000325674/1-746 -------RAS RRV------L FSLVPA---- ---------- ---------- ENSBTAP00000015965/1-739 -------QAG RRA------L FSLVPT---- ---------- ---------- bmy_05277T0/1-1352 HIAKTRKDAG RGASKSPCML VALRPTNMDR ERHKFFQSHY TYNPQFEYQE BACU018096/1-1122 HIAKTRKDAG RGASKSPCML VALRPTNMDR ERDKFFQSHY TYNPQFEYQE 1051 1100 ENSTTRP00000009736/1-745 PAP------- ---------- ---------- ---------- ---------- ENSP00000325674/1-746 PAL------- ---------- ---------- ---------- ---------- ENSBTAP00000015965/1-739 PAP------- ---------- ---------- ---------- ---------- bmy_05277T0/1-1352 PMPTAVLEKY CEASGQFLHQ AVGIIEAVLE KFGTYEHFEA VTGGQLLTKC BACU018096/1-1122 PMPTAVLEKY CEASGQFLHQ AVGIIEAVLE KFGTYEHFEA ATGGQLLTKC 1101 1150 ENSTTRP00000009736/1-745 ---------- ---------- ---------- ---------- ---------- ENSP00000325674/1-746 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015965/1-739 ---------- ---------- ---------- ---------- ---------- bmy_05277T0/1-1352 QIWSIVRKYM QKEGCAGEVV VQLSEDLLSQ AVMMVENSRP TLAINLTGAR BACU018096/1-1122 QIWSIVRKYM QKEGCAGEVV VQLSEDLLSQ AVMMVENSRP TLAINLTGAR 1151 1200 ENSTTRP00000009736/1-745 ---------- ---------- ---------- ---------- ---------- ENSP00000325674/1-746 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015965/1-739 ---------- ---------- ---------- ---------- ---------- bmy_05277T0/1-1352 QYWLEGMLRH EIGTHYLRGV NNARQPWHSA EGRLQYGLRP ANPTEEGLAS BACU018096/1-1122 QYWLEGMLRH EIGTHYLRGV NNARQPWHSA EGRLQYGLRP ANPTEEGLAS 1201 1250 ENSTTRP00000009736/1-745 ---------- ---------- ---------- ---------- ---------- ENSP00000325674/1-746 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015965/1-739 ---------- ---------- ---------- ---------- ---------- bmy_05277T0/1-1352 LHSVLFRKQP FLWRAALLYY TIHRAAHMSF RQLFQDLARY VQDADVRWEY BACU018096/1-1122 LHSVLFRKQP FLWRAALLYY TIHRAAHMSF RQLFQDLARY VQDANVRWEY 1251 1300 ENSTTRP00000009736/1-745 ---------- -PLSSCL--- ---------- ---------- ---------- ENSP00000325674/1-746 ---------- -APASCL--- ---------- ---------- ---------- ENSBTAP00000015965/1-739 ---------- -SLASCF--- ---------- ---------- ---------- bmy_05277T0/1-1352 CVRAKRGQTD TSLPGCFSKD QVYLDGIVRI LRHRQTIDFP LLTSLGKVSY BACU018096/1-1122 CVRAKRGQTD TSLPGCFSKD QVYLDGIVRI LRHRQTIDFP LLTSLGKVSY 1301 1350 ENSTTRP00000009736/1-745 -------PSG SCA------- ---------- ---------- ------PRLP ENSP00000325674/1-746 -------PSG SCA------- ---------- ---------- -----RALLL ENSBTAP00000015965/1-739 -------PSG SCA------- ---------- ---------- ---------- bmy_05277T0/1-1352 EDVDHLRPHG VLDNTRVPHF MQDLARYRQQ LEHIMTTNRL DEAELGRLLP BACU018096/1-1122 EDVDHLRPHG VLDNTRVPHF MQDLARYRQQ LEHIMTTNRL DEAELGRLLP 1351 1400 ENSTTRP00000009736/1-745 PE ENSP00000325674/1-746 AE ENSBTAP00000015965/1-739 -- bmy_05277T0/1-1352 DD BACU018096/1-1122 DD