KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:48 2014 Check: 00 .. Name: ENSP00000370826/1-1189 Len: 1313 Check: 2525 Weight: 1.00 Name: ENSBTAP00000015967/1-1186 Len: 1313 Check: 2083 Weight: 1.00 Name: ENSTTRP00000011424/1-1178 Len: 1313 Check: 5121 Weight: 1.00 Name: bmy_00954T0/1-1224 Len: 1313 Check: 3178 Weight: 1.00 Name: BACU001992/1-1180 Len: 1313 Check: 9229 Weight: 1.00 // 1 50 ENSP00000370826/1-1189 MESTPSFLKG TPTWEKTAPE NGIVRQEPGS PPRDGLHHGP LCLGEPAPFW ENSBTAP00000015967/1-1186 MEGPPSFLKD SPAWEKTAPE NGITGRELDT PPRDGLRPAA MCLGEPAPFW ENSTTRP00000011424/1-1178 MESTPSFLKD SPAWEKTAPE NGIVGPEPDT PPQDGLSPAA LCLGEPAPFW bmy_00954T0/1-1224 MESTPSFLKD SPAWEKTAPE NGIVGPEPDT PPQDGLSPAA LCLGEPAPFW BACU001992/1-1180 MESTPSFLKD SPAWEKTAPE NGLVGPELDT PPQDGLSPAA LCLGEPVPFW 51 100 ENSP00000370826/1-1189 RGVLSTPDSW LPPGFPQGPK DMLPLVEGEG PQNGERKVNW LGSKEGLRWK ENSBTAP00000015967/1-1186 RGVLSTPGSW LPPGFPQGPK DTLPLVEGEG PRNGERKAGW PSSKDGLRWK ENSTTRP00000011424/1-1178 RGVLSTPDSW LPPGFPQIPK DTLPLVEGKG SRNGERKASW SGSKGALGWK bmy_00954T0/1-1224 RGVLSTPGSW LPPGFPQSPK DTLPLVEGKG PRNGERKASW SGSKEGLRWK BACU001992/1-1180 RGVLSTPGSW LPPGFPQSPK DTLPLVEGKG PRNGERKASW SGSKEGLRWK 101 150 ENSP00000370826/1-1189 EAMLTHPLAF CGPACPPRCG PLMPEHSGGH LKSDPVAFRP WHCPFLLETK ENSBTAP00000015967/1-1186 EAMLTRPLAF CGSSCPPRYS PLVPEHNGGH PKSEPVAFRP LHCPFLLETK ENSTTRP00000011424/1-1178 EAMLTHPLAF RGSACPPCYG PLIPEHNGGP PKSDPVAFRP FHCPFLLETK bmy_00954T0/1-1224 EAMLTHPLAF CGSACPPCYG PLIPEHNGGP PKSDPVAFRP LHCPFLLETK BACU001992/1-1180 EAMLSHPLAF CGSACPPCYG PLIPEHNGGP PKSDPVAFRP LHCPFLLETK 151 200 ENSP00000370826/1-1189 ILERAPFWVP TCLPPYLVSG LPPEHPCDWP LTPHPWVYSG GQPKVPSAFS ENSBTAP00000015967/1-1186 ILERAPFWMP TCLPPYLVSS LPPEHPCDWP LAPHPWVYSG GQPKVPSTFS ENSTTRP00000011424/1-1178 ILEQAPFWVP SCLPPYLVSS LPAERPCDWP LTPHPWGCSG VQPKVPSAFG bmy_00954T0/1-1224 ILEQAPFWVP SCLPPYLVSS LPPERPCDWP LTPHPWGYAG VQPKVPSAFS BACU001992/1-1180 ILEQAPFWVP SYLPPYLVSS LPPERPCDWP LTPHPWGYAG VQPKVPSAFS 201 250 ENSP00000370826/1-1189 LGSKGFYYKD PSIPRLAKEP LAAAEPGLFG LNSGGHLQRA GEAERPSLHQ ENSBTAP00000015967/1-1186 LGSKGFYHKD PSILRLAKDP LATVEPGLLG SAPGGHLQRT GEVEHPSLHQ ENSTTRP00000011424/1-1178 LGSKGFYRKD PSILRLAKEP LATVEPGLLG SAPGGHLQRT GEVERPSLHQ bmy_00954T0/1-1224 LGSKGFYRKD PSILRLAKEP LATVERGLLG SAPGGHLQRT GEVERPSLHQ BACU001992/1-1180 LGSKGFYCND PSILRLAKEP LATVERGWLG LVPGGHLQRT GEVERPSLHQ 251 300 ENSP00000370826/1-1189 RDGEMGAGRQ QNPCPLFLGQ PDTVPWTSWP ACPPGLVHTL GNVWAGPGDG ENSBTAP00000015967/1-1186 RDGETGVGRH PNLCPLLLGH PDTVPRTPWP TCSPGLVHTL GNVWAVPGGG ENSTTRP00000011424/1-1178 RDGETGVGRH QDLCPRVLGH PDTVPPTPWP TCSPGLVH-- GTVWAVPGGG bmy_00954T0/1-1224 RDGETGVVRH QNLCPLVLGH PDTVPRTPWP TCSPGLVHTL GNVWAVPGGG BACU001992/1-1180 RGGETGVGRH QNLCPLVLGH PDTVPRTLWP TCSPGLVHTL GNVWAVPGGG 301 350 ENSP00000370826/1-1189 NLGYQLGPPA TPRCPSPEPP VTQRGCCSSY PPTKGGGLGP CGKCQEGLEG ENSBTAP00000015967/1-1186 SLGYQLGPSA TTRCPSP-PP TTQAGYCSSH PPARD---DP CGQCQEDLEG ENSTTRP00000011424/1-1178 SFGYQLGPSA TSRCPSPGPP TTQVDRCSLH PPARDGGVGP CGKYQEDLEG bmy_00954T0/1-1224 SLGYQLGPSA TSRCPSPGPP TTQVDRCSSH PPARDGGLGP CGKCQEDLEG BACU001992/1-1180 SLGYQLGPSA TSRCPSPGPP TTQVDRCSSH PPARDGGLGP CGKCQEDLEG 351 400 ENSP00000370826/1-1189 GASGASEPSE EVNKASGPRA CPPSHHTKLK KTWLTRHSEQ FECPRGCPEV ENSBTAP00000015967/1-1186 ATSEPSESSE EACKTPGPRA CPPSHHTKLK KTWLTRHSEQ FGCPDSCPGE ENSTTRP00000011424/1-1178 GTSGPSESSE EVNKAPGPRA CPPSHHTKLK KTWLTRHSEQ FGCPDSCSGE bmy_00954T0/1-1224 GTSGPSESSE EANKAPGPRA CPPSHHTKLK KTWLTRHSEQ FGCPDSCSGE BACU001992/1-1180 GTSGPSESSE EANKAPGPRA CPPSHHTKLK KTWLTRHSEQ FGCPDNCSGE 401 450 ENSP00000370826/1-1189 EERPVARLRA LKRAGSPEVQ GAMGSPAPKR PPDPFPGTAE QGAGGWQEVR ENSBTAP00000015967/1-1186 EESPAAQLRA RKRSSSPEVQ GTASSPAAKR PTGPFPGSVG QGARGRQEVL ENSTTRP00000011424/1-1178 EESPAAQLRA LKRASSPEVQ GAVGSPAAKR PSGPFPGSAG QGARGWQELL bmy_00954T0/1-1224 EESPAAQLRA LKRASSPEVQ GAVGSPAAKR PSGPFPGSVG QGARGWQELL BACU001992/1-1180 EESPASQLRA LKRASSPEVQ GAVGSPAAKR PSGPFPGSVG QGARGWQELL 451 500 ENSP00000370826/1-1189 DTSIGNKDVD SGQHDEQKGP QDGQASLQDP GLQDIPCLAL PAKLAQCQSC ENSBTAP00000015967/1-1186 DSLFGNK-AE TEQCGDHRGT RDDGASLQAP GLQETPRVAP VAGITQCQGC ENSTTRP00000011424/1-1178 DSSFGNK-AE AEQRDDHRGP RDIRASLQDP GLQETPCSAP PAGMTQCQSC bmy_00954T0/1-1224 DSSFGNK-AE AEQHDDHRGP RDIRARLQDP GLQDTPCAAP PAGMTQCQSC BACU001992/1-1180 DSSFGNK-AE AKQRDDHRGP RDIRARLQDP GLQDTPCAAP PAGMTQCQSC 501 550 ENSP00000370826/1-1189 AQAAGEGGGH ACHSQQVRRS PLGGELQQEE DTATNSSSEE GPGSGP-DSR ENSBTAP00000015967/1-1186 AQAAGETGGP ARYSQPLSRL PLGEEQPQEE DLA--ASSEE GGGSGL-EAG ENSTTRP00000011424/1-1178 AQAAGEAGGL ACHSQPVPRL PLGGEQRQEE DSA---ASSE GGGSGPEEAG bmy_00954T0/1-1224 AQAAGAAGGP ACHSQPVPRL -----QQQEE DAA---ASSE GGGSGPEEAG BACU001992/1-1180 AQAAGAVGGP ACHSQPVPRL -----QQQEE DSA---ASSE GGGSGPEEAG 551 600 ENSP00000370826/1-1189 LSTGLAKHLL SGLGDRLCRL LRREREALAW AQRE-GQGPA VTEDSPGIPR ENSBTAP00000015967/1-1186 LSVGLAKHLL SALGDRLCRV LRREREALAW AHQE-GQAPV GTEDDPSLPR ENSTTRP00000011424/1-1178 LSMGLAKHLL SALGDRLCRV LRREREVLAC AQRE-GQGPA GTEDNPGIPR bmy_00954T0/1-1224 LSMGLAKHLL SALGDRLCHV LRREREVLAW AQRE------ ---------- BACU001992/1-1180 LSMGLAKHLL SALGDRLCHV LRREREVLAW AQREAGQGPA GTEDNPGIPR 601 650 ENSP00000370826/1-1189 CCSRCHHGLF NTHWRCPRCS HRLCVACGRV AGTGRAREKA GFQEQSAEEC ENSBTAP00000015967/1-1186 CCSHCHHGLF NTHWRCPRCS HRLCVACGRM AGAGRTREKA GSQGQSTEKC ENSTTRP00000011424/1-1178 CCSRCHHGLF NTHWRCPCCS HRLCVACGRM AGAWRTREKE GSQEQSMEKC bmy_00954T0/1-1224 ---------- ---------- ---------- ---------- GSQEQSMEKC BACU001992/1-1180 CCSRCHHGLF NTHWRCPCCS HRLCVACGRM AGAWRTREKE GSQEQSMEKC 651 700 ENSP00000370826/1-1189 TQEAGHAACS LMLTQFVSSQ ALAELSTAMH QVWVKFDIRG HCPCQADARV ENSBTAP00000015967/1-1186 GQEVGHSASS LMLTQFVSSQ ALAELSAAMH QVWVKFDIRG HCPCQADARL ENSTTRP00000011424/1-1178 TQEAGHSACS LMLTQFVSSQ AMAELSTAMH QVWVKFDIRG HCPCQADARM bmy_00954T0/1-1224 TQEAGHSACS LMLTQFVSSQ ALAELSTAMH QVWVKFDIRG HCPCQADAWV BACU001992/1-1180 PQEAGHSACS LMLTQFVSSQ ALAELSTAMH QVWVKFDIRG HCPCQADARV 701 750 ENSP00000370826/1-1189 WAPGDAGQQK ESTQKTPPTP QPSCNGDTHR TKSIKEETPD SAETPAEDRA ENSBTAP00000015967/1-1186 WTAGDGGPQK EPMEKTPPTP QPSCNGETNR TKDIKEETPD STETPAEDRA ENSTTRP00000011424/1-1178 WTPGDGGQQK EPTEKTPPTP QPSCNRDTNR TKDIKEETPD SRETPAEDRA bmy_00954T0/1-1224 WTPGDGGQQV ---------- -----RSRAR DRAL-AETPD SRETPAEDRA BACU001992/1-1180 WTPGDGGQQK EPMEKTPPTP QPSCNRDTNR TKDTKEETPD SRETPAEDRA 751 800 ENSP00000370826/1-1189 GRGPLPCPSL CELLASTAVK LCLGHERIHM AFAPVTPALP S--------- ENSBTAP00000015967/1-1186 SRGPLPCPSL CELLASTAVK LCLGHERIHM AFAPVTPALP S--------- ENSTTRP00000011424/1-1178 GQGPLPCPSL CELLASTAVK LCLGHERIHM AFAPVTPALP S--------- bmy_00954T0/1-1224 GQGPLPCPSL CELLASTAVK LCLGHERIHM AFAPVTPALP SVSEGTKGGL BACU001992/1-1180 GQGPLPCPSL CELLASTAVK LCLGHERIHM AFAPVTPALP S--------- 801 850 ENSP00000370826/1-1189 ---------- ---------- ---------- ---------- -DDRITNILD ENSBTAP00000015967/1-1186 ---------- ---------- ---------- ---------- -DDRITNILD ENSTTRP00000011424/1-1178 ---------- ---------- ---------- ---------- -DNRITNILD bmy_00954T0/1-1224 GAWGRNWAGL PCRVRRVLGW PSLQGQAGPE HACLSAPPSP QDDRITNILD BACU001992/1-1180 ---------- ---------- ---------- ---------- -DDRITNILD 851 900 ENSP00000370826/1-1189 SIIAQVVERK IQEKALG--- ---PGLRAGP GLRKGLGLPL SPVRPRLPPP ENSBTAP00000015967/1-1186 SIIAQVVERK IQEKALGPGL RAGPGLRAGP GLRKGLGLPL SPVRPRLPPP ENSTTRP00000011424/1-1178 SIIAQVVERK IQERALG--- ---PGLRAGP ------GLPL SPVXXXXXXX bmy_00954T0/1-1224 SIIAQVVERK IQERALG--- ---PGLRAGP GLRKGLGLPL SPVRPRLPPP BACU001992/1-1180 SIIAQVVERK IQERALG--- ---PGLRAGP GLWKGLGLPL SPVRPRLPPP 901 950 ENSP00000370826/1-1189 GALLWLQEPQ PCPRRGFHLF QEHWRQG--- ---------- ---------- ENSBTAP00000015967/1-1186 GALLWLQEPR --PQRGFHLF QEHWRQG--- ---------- ---------- ENSTTRP00000011424/1-1178 XXXXXXXXXX --XXXXXXXX XXXXXXX--- ---------- ---------- bmy_00954T0/1-1224 GALLWLQEPR --PRRGFHLF QEHWRQGQVR LPALTASPTL RALIPRPRQT BACU001992/1-1180 GALLWLQEPR --PRRGFHLF QEHWRQG--- ---------- ---------- 951 1000 ENSP00000370826/1-1189 ---------- ---------- ---------- ---------- ---QPVLVSG ENSBTAP00000015967/1-1186 ---------- ---------- ---------- ---------- ---QPVLVSG ENSTTRP00000011424/1-1178 ---------- ---------- ---------- ---------- -XXXPVLVSG bmy_00954T0/1-1224 WSVTGREQQG LSPRHSGAPT TCPGLAMLGT PSILPVSPFL SPLQPVLVSG BACU001992/1-1180 ---------- ---------- ---------- ---------- ---QPVLVSG 1001 1050 ENSP00000370826/1-1189 IQRTLQGNLW GTEALGALGG QVQALSPLGP PQPSSLGSTT FWEGFSWPEL ENSBTAP00000015967/1-1186 IQRTLQGHLW GSEALGALGG QVQALTPLGP PQPTSLGSAT FWEGFSRPES ENSTTRP00000011424/1-1178 IQGTLQGHLW GTEALGALGG QVQELTPLRP PQPASLGSTT FWEGFSRPEI bmy_00954T0/1-1224 IQGTLQGHLW GTEALGALGG QVQELTPLRP PQPASLGSAT FWEGFSRPEI BACU001992/1-1180 IQGTLQGHLW GTEALGALGG QVQALTPLRP PQPASLGSTT FWEGFSRPEI 1051 1100 ENSP00000370826/1-1189 RPKSDEGSVL LLHRALGDED TSRVENLAAS LPLPEYCALH GKLNLASYLP ENSBTAP00000015967/1-1186 RPKSDEGSVF LLHRALGDED TSRVENLAAS LPLPEYCAHH GKLNLASYLP ENSTTRP00000011424/1-1178 RPKSDEGSVF LLHRALGDED TSRVESLAAS LPLPEYCARH GKLNLASYLP bmy_00954T0/1-1224 RPKSDEGSVF LLHRALGDED TSRVESLAAS LPLPEYCARH GKLNLASYLP BACU001992/1-1180 RPKSDEGSVF LLHRALGDED ASRVESLAAS LPLPEYCARH GKLNLASYLP 1101 1150 ENSP00000370826/1-1189 PGLALRPLEP QLWAAYGVSP HRGHLGTKNL CVEVADLVSI LVHADTPLPA ENSBTAP00000015967/1-1186 PGPVLRPLEP QLWAAYGVSP HRGHLGTKNL CVEVTDLVSV LVHAEAPLPT ENSTTRP00000011424/1-1178 WGSVLRPLEP QLWAAYGVSP QCGHLGTKNL CVEVTDLVSV LVRAEAPLPA bmy_00954T0/1-1224 WGSVLRPLEP QLWAAYGVSP QCGHLGTKNL CVEVTDLVSV LVRAEAPLPA BACU001992/1-1180 WGSVLRPLEP QLWAAYGVSP QCGHLGTKNL CVEVTDLVSV LVRAEAPLPA 1151 1200 ENSP00000370826/1-1189 WHRAQKDFLS GLDGEGLWSP GSQVSTVWHV FRAQDAQRIR RFLQMVCPAG ENSBTAP00000015967/1-1186 WRRTQKDFLS GLDGEGLWSP GSQVSTVWHV FRAQDAQRIR RFLQMVCPTG ENSTTRP00000011424/1-1178 WHRTQKDFLS ALDGEGLWSP GSQVSTVWHV FRAQDAQRIR RFLQMVCPAG bmy_00954T0/1-1224 WHWTQKDFLS ALDGEGLWSP GSQVSTVWHV FRAQDAQRIR RFLQMVCPAG BACU001992/1-1180 WHWTQKDFLS ALDGEGLWSP GSQVSTVWHV FRAQDAQRIR RFLQMVCPAG 1201 1250 ENSP00000370826/1-1189 AGALEPGAPG SCYLDAGLRR RLREEWGVSC WTLLQAPGEA VLVPAGAPHQ ENSBTAP00000015967/1-1186 AGNLEPGTPG RCYLDAGLRR RLREEWGVSC WTLLQAPGEA VLVPAGAPHQ ENSTTRP00000011424/1-1178 AGNLEPGTPG SCYLDAGLRR RLREEWGVSC WTLLQAPGEA VLVPAGAPHQ bmy_00954T0/1-1224 AGNLEPGTPG SCYLDAGLRR RLREEWGVSC WTLLQAPGEA VLVPAGAPHQ BACU001992/1-1180 AGNLEPGTPG SCYLDAGLRR RLREEWGVSC WTLLQAPGEA VLVPAGAPHQ 1251 1300 ENSP00000370826/1-1189 VQGLVSTVSV TQHFLSPETS ALSAQLCHQG PSLPPDCHLL YAQMDWAVFQ ENSBTAP00000015967/1-1186 VQCLVSTVSV TQHFLSPETS ALSAQLCHQG PSLPTAHRLL YAQMDWAVFQ ENSTTRP00000011424/1-1178 VQGLVSTVSV TQHFLSPETS ALSAQLCHQG PSLPPDCRLL YAQMDWAVFQ bmy_00954T0/1-1224 VQGLVSTVSV TQHFLSPETA ALSAQLCHQG PSLPPDCRLL YAQMDWAVFQ BACU001992/1-1180 VQGLVSTVSV TQHFLSPETA ALSAQLCHQG PSLPPDCRLL YAQMDWAVFQ 1301 1350 ENSP00000370826/1-1189 AVKVAVGTLQ EAK ENSBTAP00000015967/1-1186 AVKVAVGTLQ EAK ENSTTRP00000011424/1-1178 AVKLAVGTLQ EAK bmy_00954T0/1-1224 AVKLAVGTLQ EAK BACU001992/1-1180 AVKLAVGTLQ EAK