KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:57:51 2014 Check: 00 ..
Name: ENSBTAP00000015977/1-663 Len: 688 Check: 283 Weight: 1.00
Name: ENSP00000364620/1-663 Len: 688 Check: 3290 Weight: 1.00
Name: ENSTTRP00000014743/1-661 Len: 688 Check: 6732 Weight: 1.00
Name: bmy_08211T0/1-647 Len: 688 Check: 7731 Weight: 1.00
Name: BACU005694/1-663 Len: 688 Check: 4714 Weight: 1.00
//
1 50
ENSBTAP00000015977/1-663 MAQRSAVRLS PKKPSYAVCA VGVETHLDVH SDVPEGAENF GVSGSSGVKI
ENSP00000364620/1-663 MAPKRVVQLS LKMPTHAVCV VGVEAHVDIH SDVPKGANSF RVSGSSGVEV
ENSTTRP00000014743/1-661 MAPQRAVQLS LKKPTYAVCV VGIETYVDVY SDVPKGAETF SVSGSSGVEV
bmy_08211T0/1-647 ---------- ---------- -MLSSLLSI- SDVPKGAETF RVSGSSGVEV
BACU005694/1-663 MAPQRAVQLS LKKPTYAVCV VGIETYVDVH SDVPKGAENF RVSGSSGVEV
51 100
ENSBTAP00000015977/1-663 FMVYDPARVT EPTGRAYWPL DASVEVVISV DAASKALNDL KVKISYFGQP
ENSP00000364620/1-663 FMVYNRTRVK EPIGKARWPL DTDADMVVSV GTASKELKDF KVRVSYFGEQ
ENSTTRP00000014743/1-661 FMVYNTAQVT EPTGKAYWPL NAGVDVIISV DTASKALNDL EVQVSYFGLQ
bmy_08211T0/1-647 FTVYNTAQVT EPTDKAHWPL DAGVDVIISV DAASKALNDL KVNVSYFGRQ
BACU005694/1-663 FTVYNTAQVT EPIDKAHWPL DAGVDVIISV DAASKALNDL KVNVSYFGQQ
101 150
ENSBTAP00000015977/1-663 ARGALGHSVL YLTGADISLD ADTGRTGNVK RSQADKERWR WGPEGYGAVL
ENSP00000364620/1-663 EDQALGRSVL YLTGVDISLE VDTGRTGKVK RSQGDKKTWR WGPEGYGAIL
ENSTTRP00000014743/1-661 K-AALGHSVL CLTGADISLD VDTGRTGKVK RSHGDKKTWR WGPEGYGAIL
bmy_08211T0/1-647 KDSALGHSVL YLTGADISLD VDTGRTGKVK RSQGDKKTWR WGPEGYGAVL
BACU005694/1-663 KDSALGHSVL YLTGADISLD VDTGRTGKVK RSQGDKKTWC WGPEGYGAVL
151 200
ENSBTAP00000015977/1-663 LVNCDRDSLR SVGTDLTDTQ LASRDDLQDM SPVVLTCDAP DALFESYKLV
ENSP00000364620/1-663 LVNCDRDNHR SAEPDLTHSW LMSLADLQDM SPMLLSCNGP DKLFDSHKLV
ENSTTRP00000014743/1-661 LVNCDRDSFR SREIDLTSTQ LTSLEDLQDM APMVLSCDGP DELFDSHKLV
bmy_08211T0/1-647 LVNCDRDSLR SRGIDLANTQ LTSLDDLQDM APMVLSCDGP DELFDSHKLV
BACU005694/1-663 LVNCDRDSLR SRGMDLANTQ LTSLDDLQDM APMVLSCDGP DELFDSHKLV
201 250
ENSBTAP00000015977/1-663 LNVPPSDSKR MRVFCARGGN SLLDYEQVLG PQHLSYAVAR QPGERKIGLY
ENSP00000364620/1-663 LNVPFSDSKR VRVFCARGGN SLSDYKQVLG PQCLSYEVER QPGEQEIKFY
ENSTTRP00000014743/1-661 LNVPFSDSRR MAVFCARGGN SLSDYKQVLG PQQLYYEVER HPGERKISFY
bmy_08211T0/1-647 LNVPLSDSRR VGVFCARGGN SLSDYKQVLG PWRLSYEVER HPGERKISFY
BACU005694/1-663 LNVPLSDSRR VGVFCARGGN SLSDYRQVLG PWHLSYEVER HPGERKISFY
251 300
ENSBTAP00000015977/1-663 VEGLSFPDAN FLGLVSLSVS LVDTKTLPEV PLFTDTVAFR VAPWIMTPNT
ENSP00000364620/1-663 VEGLTFPDAD FLGLVSLSVS LVDPGTLPEV TLFTDTVGFR MAPWIMTPNT
ENSTTRP00000014743/1-661 VEGLTFPDAD FLGLVSLSVS LVDTKTLPEV PYFTDTVTFR MAPWIMTPNT
bmy_08211T0/1-647 VEGLTFPDAH FLGLVSLSVS LVDTKTLPEV PHFTDTVTFR VAPWIMTPNT
BACU005694/1-663 VEGLTFPDAH FLGLVSLSVS LVDTKTLPEV PHFTDTVTFR MAPWIMTPNT
301 350
ENSBTAP00000015977/1-663 QPPLELYVCS VLDSHGPNAQ FLSDMSDLAL KASCKLMICP RVENRNDRWI
ENSP00000364620/1-663 QPPEELYVCR VMDTHGSNEK FLEDMSYLTL KANCKLTICP QVENRNDRWI
ENSTTRP00000014743/1-661 QCPLEVYVCS VLDSHGSNET FLKDISDLAL KANCKLIVCP WTENRNDRWI
bmy_08211T0/1-647 QCPLELYVCS VVDSHGSNEK FLKDVSDLAS KANCKLIVCP WIENRNDRWI
BACU005694/1-663 QSPLELYVCS VVDSHGSNEK FLKDMSDLAS KANCKLIVCP WIENRNDRWI
351 400
ENSBTAP00000015977/1-663 QDEMEFGYTE APHKAFPVVF DSPRNRGLKD FPYKRILGPD FGYVTRESQS
ENSP00000364620/1-663 QDEMEFGYIE APHKSFPVVF DSPRNRGLKD FPYKRILGPD FGYVTREIPL
ENSTTRP00000014743/1-661 QDEMEFGYIE APHKSFPVVF DSPRDRGLKY FPYKRILGPD FGYVIRETQF
bmy_08211T0/1-647 QDEMEFGYIE APHKSFPVVF DSPRDRHLKY FPYKSILGPD FGYVTQEIPF
BACU005694/1-663 QDEMEFGYIE APHKSFPVVF DSPRNRRLKY FPYKSILGPD FGYVTREIPF
401 450
ENSBTAP00000015977/1-663 TAVSGLDSFG NLDVSPPVVV EGKEYPLGRI LIGSCLPRSG GRRMAKVVRD
ENSP00000364620/1-663 PGPSSLDSFG NLDVSPPVTV GGTEYPLGRI LIGSSFPKSG GRQMARAVRN
ENSTTRP00000014743/1-661 AGVSDLDSFG NLDISPPVTV GGKEYPLGRI LIGSSFPKSG GRRMAKVVRD
bmy_08211T0/1-647 AGVSGLDSFG NLEVSPPVTV EGKEYPLGRI LIGSSFPKSG GQRMAKVVRD
BACU005694/1-663 AGVSGLDSFG NLDVSPPVTV EGKEYPLGRI LIGSSFPKSG GQQMAKVVRD
451 500
ENSBTAP00000015977/1-663 FLGAQRVQAP LEVYSDWLSV GHVDEFLTFV PTSDQKGFRL LLASPSACLK
ENSP00000364620/1-663 FLKAQQVQAP VELYSDWLSV GHVDEFLTFV PTSDQKGFRL LLASPSACLK
ENSTTRP00000014743/1-661 FLKAQQVQAP VEIYSDWLWV GHVDEFLSFV PTSDQKGFRL LLASPIACLN
bmy_08211T0/1-647 FLKAQQVQAP VELYSDWLYV GHVDEFLSFV PTSDQKGFRL LLASPSACLK
BACU005694/1-663 FLKAQQVQAP VELYSDWLYV GHVDEFLSFV PTSDQKGFRL LLASPSACLE
501 550
ENSBTAP00000015977/1-663 LFQKKKEEGY GEAAQFDGLE HQVKRSINEM LADRRLRNDN LYAQRCIDWN
ENSP00000364620/1-663 LFQEKKEEGY GEAAQFDGLK HQAKRSINEM LADRHLQRDN LHAQKCIDWN
ENSTTRP00000014743/1-661 LFQEKKEEGY GEAAQFDGLN YQVKRSINEI LEDRS-QSDN LYAQRCIDWN
bmy_08211T0/1-647 LFQEKKEEGY GEAAQFDGLK RQVKRSINEM LEDSRLRNDS LHVQ------
BACU005694/1-663 LFQEKKEEGY GEAAQFDGLK YQAKRSINEM LEDRRLRNDN LHVQECIDWN
551 600
ENSBTAP00000015977/1-663 REVLKRELGL TEHDIVDIPQ LFSLKDAYAE AFFPDM---- ----------
ENSP00000364620/1-663 RNVLKRELGL AESDIVDIPQ LFFLKNFYAE AFFPDM---- ----------
ENSTTRP00000014743/1-661 REVLKQELGL TERDIVDIPQ LFYLKDSQAE AFFPNM---- ----------
bmy_08211T0/1-647 ---------- ---DIVDVPQ LFFLKDFYAE AFFPNMVRAW REDRSFPSLV
BACU005694/1-663 REVLKRELGL TEQDIVDIPQ LFFLKDSYAE AFFPDM---- ----------
601 650
ENSBTAP00000015977/1-663 ---------- -VNMVVLGRH LGIPKPFGPL INGRCCLEEE VRSLLEPLGL
ENSP00000364620/1-663 ---------- -VNMVVLGKY LGIPKPYGPI INGRCCLEEK VQSLLEPLGL
ENSTTRP00000014743/1-661 ---------- -VNMVVLGKY LGIPKPYGPI INGCCCLEEK VRSLLEPLGL
bmy_08211T0/1-647 LGGVLLGGQL GVNMVVLGKY LGIPKPFGPI INGSCCLEEK VRSLLEPLGL
BACU005694/1-663 ---------- -VNMVVLGKY LGIPKPFGPI INGSCCLEEK VRSLLEPLGL
651 700
ENSBTAP00000015977/1-663 HCTFIDDYYA YHKLLGEIHC GSNVRRKPFP FKWWHVVP
ENSP00000364620/1-663 HCIFIDDYLS YHELQGEIHC GTNVRRKPFP FKWWNMVP
ENSTTRP00000014743/1-661 CCTFIDDYLS YHELCGEIHC GTNVRRKPFP FKWWHVVP
bmy_08211T0/1-647 YCIFIDDYLS YHKLLGEIHC GTNVRRKPFP FKWWHMVP
BACU005694/1-663 YCIFIDDYLS YHKLLGEIHC GTNVRRKPFP FKWWHMVP