KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:53 2014 Check: 00 .. Name: ENSTTRP00000004817/1-607 Len: 734 Check: 5974 Weight: 1.00 Name: ENSP00000364597/1-663 Len: 734 Check: 7794 Weight: 1.00 Name: ENSBTAP00000015991/1-666 Len: 734 Check: 2514 Weight: 1.00 Name: bmy_08209T0/1-368 Len: 734 Check: 7861 Weight: 1.00 Name: BACU005695/1-667 Len: 734 Check: 8189 Weight: 1.00 // 1 50 ENSTTRP00000004817/1-607 MAQGTVI-VA PEQPTYAVCV LGTETQLDVY ---------- ---------- ENSP00000364597/1-663 MAQGTLIRVT PEQPTHAVCV LGTLTQLDIC ---------- ---------- ENSBTAP00000015991/1-666 MAWGTVVHVA PGQPTQAVCV LGTETQLDVY ---------- ---------- bmy_08209T0/1-368 ---------- ---------- ---------- ---------- ---------- BACU005695/1-667 MSLQRIVRVP LGHPTSAVCV AGVETLVDIY GSVPEGTEMF EVYGTPGVDI 51 100 ENSTTRP00000004817/1-607 ---------- ---------- ---------- ---------- ---GSAPKDC ENSP00000364597/1-663 ---------- ---------- ---------- ---------- ---SSAPEDC ENSBTAP00000015991/1-666 ---------- ---------- ---------- ---------- ---SSAPKGY bmy_08209T0/1-368 ---------- ---------- ---------- ---------- ---MRAASDS BACU005695/1-667 YISPRVERDW EHADTRWWCF DAGLQIIVVM NSPSNDLNDS HISSSAPKDC 101 150 ENSTTRP00000004817/1-607 TSFSINASPG VVVDVAHHPP AKKNLTGSSK WPLDPGLEVS LKMRAASDST ENSP00000364597/1-663 TSFSINASPG VVVDIAHGPP AKKKSTGSST WPLDPGVEVT LTMKVASGST ENSBTAP00000015991/1-666 TSFSITASPG VVVKVAHRPP AKKSPTGASQ WRLEPGLDVS LKLRAASEST bmy_08209T0/1-368 T--------- ---------- ---------- ---------- ---------- BACU005695/1-667 TSFSISASPG VVVDVAHRPP AKKNLTGSSK WPLDPGLEVS LKMTAASDST 151 200 ENSTTRP00000004817/1-607 GDRKVQISYY GPETTPAEAL LYITGVEISL SADFTRTAKM KSTGGRKDQR ENSP00000364597/1-663 GDQKVQISYY GPKTPPVKAL LYLTGVEISL CADITRTGKV KPTRAVKDQR ENSBTAP00000015991/1-666 GDQQVQISYH GPAPTPAEAL LYLTGVEISL SADISRTGKM KPTGSVKDKR bmy_08209T0/1-368 ---------- ---------- ------EISL SADFTRTGKM KSTGGRKDQR BACU005695/1-667 GDQKVQISYY GPETTPVEAL LYVTRVEI-L RVDFTRTGKM KSTGGRKDQR 201 250 ENSTTRP00000004817/1-607 TWTWGPHGRG AILLVNCDRD NPKSSTVDCK DDQ-LDSKDL KDMSLVTLST ENSP00000364597/1-663 TWTWGPCGQG AILLVNCDRD NLESSAMDCE DDEVLDSEDL QDMSLMTLST ENSBTAP00000015991/1-666 AWTWGPRGQG AILLVNCDRD NPNSSAVDYK DEQ-LDSHDL EDLSLVTLST bmy_08209T0/1-368 TWTWGPHGQG AILLVNCDRD SPISPTVDCK DDQ-LDSKDL KDMSLVTLST BACU005695/1-667 TWTWGPHGQG AILLVNCDRD SPISSTVDCK DDQ-LDSKDL KDMSLVTLST 251 300 ENSTTRP00000004817/1-607 KTPRD-FSKH QLVLHVAKSE MDKV-VFRAN ADKQPSRYGM ILGPRHPFHP ENSP00000364597/1-663 KTPKDFFTNH TLVLHVARSE MDKVRVFQAT RGKLSSKCSV VLGPKWPSHY ENSBTAP00000015991/1-666 RTPGDFFSKH QLVLHVAKAE MDKVRVFQDN GGQQPSRYSA VLGPERPSHL bmy_08209T0/1-368 KTPRDFFSKH RLVLHVAKSE MDKVRVFRAN GSTCNS---- ---------- BACU005695/1-667 KTPRDFFSKH QLVPHVAKSE MDKVRVFRAN ADKQPSRYGM ILGPRHPSHP 301 350 ENSTTRP00000004817/1-607 LELQGGHHST DFYVEGLASP DASFPGLVSL NVSLLHI--- ---------- ENSP00000364597/1-663 LMVPGGKHNM DFYVEALAFP DTDFPGLITL TISLLDTSNL ELPEAVVFQD ENSBTAP00000015991/1-666 LELPGGQRST HFYVEGLAFP DASFPGLVSL HLSLLDVSNP ELPQSLLFQD bmy_08209T0/1-368 --LPSTRSS- ---------- ---------- ---------- ---------- BACU005695/1-667 LELQGGHHST DFHVEGLAFP DASFPGLISL NVSLLDTSKP ELPKALVFQD 351 400 ENSTTRP00000004817/1-607 ---------- ---------- --ITVLFANE DFLKSVAALA KKARCRLTVC ENSP00000364597/1-663 SVVFRVAPWI MTPNTQPPQE VYACSIFENE DFLKSVTTLA MKAKCKLTIC ENSBTAP00000015991/1-666 SVVFRVAPWI MTPNTQPPKE VYVCRVFENE DFLTSLTALA KKANCKLTVC bmy_08209T0/1-368 ---------- ---------- ---------- ---------- ---------- BACU005695/1-667 NVVFHVAPWI MTPNTQSPKE VYVCRLFENE DFLKSVAALA KKARYKLMVC 401 450 ENSTTRP00000004817/1-607 AKEESMNDRW MQXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000364597/1-663 PEEENMDDQW MQDEMEIGYI QAPHKTLPVV FDSPRNRGLK EFPIKRVMGP ENSBTAP00000015991/1-666 AQEESVDDRW MQDEMEIGYT QAPHRTLPVV FDSPRNRGLK DFPIKCMLGP bmy_08209T0/1-368 ---------- -QDEMEIGYI QAPHKTLPVV FDSPRNRGLK DFPIKCMLGP BACU005695/1-667 AKEESMNDRW MQDEMEIGYI QAPHKTLPVV FDSPRNRGLK DFPIKCMLGP 451 500 ENSTTRP00000004817/1-607 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000364597/1-663 DFGYVTRGPQ TGGISGLDSF GNLEVSPPVT VRGKEYPLGR ILFGDSCYPS ENSBTAP00000015991/1-666 DFGYVTRGPQ TGSVTDLDSF GNLEVSPPVT VRGKVYPLGR ILIGDSGYPS bmy_08209T0/1-368 DFGYMTRVPQ TGRVTDLDSF GNLEVSPPGD SRGEGIPAGQ DSHWGQRLP- BACU005695/1-667 DFGYMTRVPQ TGRVTDLDSF GNLEVSSPVT VGGKEYPLGR ILTGDRGYPS 501 550 ENSTTRP00000004817/1-607 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000364597/1-663 NDSRQMHQAL QDFLSAQQVQ APVKLYSDWL SVGHVDEFLS FVPAPDR--- ENSBTAP00000015991/1-666 QESQEMHRAL QDFLGAQQVQ APLRLYSDWL SVGHVDEFLS FVPA----FC bmy_08209T0/1-368 QESQEMHQDL QDFLSAQQVQ APVKLYSDWL SVGHVDEFVS FVPVHKKGFC BACU005695/1-667 KESQEMHQDL QDFLSAQQVQ APVKLYSDWL SVGHVDEFLS FVPVHKK--- 551 600 ENSTTRP00000004817/1-607 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXLSEKLR-- ENSP00000364597/1-663 -KGFRLLLAS PRSCYKLFQE QQNEGHGEAL LFEGIKKKKQ QKIKNILSNK ENSBTAP00000015991/1-666 PQGFRLLLAS PRACYQLFQE QLKEGHGEAL LFPGVKKKKQ QKIKDILSDK bmy_08209T0/1-368 LQGFRLLLAS PRSCYKLFQE RMKDGHGEAL LFQGVKSKLA VPPHPTHR-- BACU005695/1-667 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000004817/1-607 ----HNSYVE KCIDWN---- --ELGVKEGD IVDIPQLFKL QKGFKGTLKV ENSP00000364597/1-663 TLREHNSFVE RCIDWNRELL KRELGLAESD IIDIPQLFKL -KEFS---KA ENSBTAP00000015991/1-666 KLREHNSYVE KCIDWNRAVL KRELGLTERD IVDIPQLFRL IKDSRGTPKA bmy_08209T0/1-368 --RPLLPPPQ KYIDWNREVL KRELGLTERD IVDIPQLFKL QKGFEGTLKA BACU005695/1-667 ---------- KCIDWNREVL KPEL--TERD IVDVPQLFKL QKGFEGTLKA 651 700 ENSTTRP00000004817/1-607 EAFFPNMVNM LVLGKHLGIP KPFGPIINSR CCLEEKVRSL LEPLGLHCTF ENSP00000364597/1-663 EAFFPNMVNM LVLGKHLGIP KPFGPVINGR CCLEEKVCSL LEPLGLQCTF ENSBTAP00000015991/1-666 EAFFPNMVNM LVLGQHLGIP KPFGPVINGR CCLEEKVRSL LEPLGLHCTF bmy_08209T0/1-368 EAFFPNMVRK ---------- ---------- ---------- ---------- BACU005695/1-667 EAFFPNMVNM LVLGKHLGIP KPFGPIINGR CCLEEKVWSL LEPLGLHCTF 701 750 ENSTTRP00000004817/1-607 IDDFYTYHVQ QGNVHCGTNV C--------- ---- ENSP00000364597/1-663 INDFFTYHIR HGEVHCGTNV RRKPFSFKWW NMVP ENSBTAP00000015991/1-666 LDDYYAYHVR QGNVHCGTNV RRQPFSFKWW HMEP bmy_08209T0/1-368 ---------- ---------- ---------- ---- BACU005695/1-667 IDDFYTYHVQ HGDVHCGTNV CRQPFSFKWW HMVP