KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:57:54 2014  Check: 00 ..

 Name: ENSTTRP00000003365/1-195  Len:    201  Check:  1938  Weight:  1.00
 Name: ENSBTAP00000015996/1-199  Len:    201  Check:  259  Weight:  1.00
 Name: ENSP00000301522/1-198     Len:    201  Check:  8814  Weight:  1.00
 Name: bmy_04868T0/1-198         Len:    201  Check:  8780  Weight:  1.00
 Name: BACU003983/1-198          Len:    201  Check:  8780  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000003365/1-195  INDIS----- -PTRKYMSNA RTFMYFTLYK VKLSDYKGKY LVLFFYPLDF 
ENSBTAP00000015996/1-199  MACVCKAHVG KPAPEFQATA VVDGAFK--E VKLSDYKGKY VVLFFYPLDF 
ENSP00000301522/1-198     -MASGNARIG KPAPDFKATA VVDGAFK--E VKLSDYKGKY VVLFFYPLDF 
bmy_04868T0/1-198         -MTSGNAHIG KPAPEFQATA VVDGAFK--E VKLSDYKGKY LVLFFYPLDF 
BACU003983/1-198          -MTSGNAHIG KPAPEFQATA VVDGAFK--E VKLSDYKGKY LVLFFYPLDF 


                          51                                                 100
ENSTTRP00000003365/1-195  TFVCPTEIIA FSERAEEFHK LDCDVLGVSV DSQFTHLAWI NTPRKEGGLG 
ENSBTAP00000015996/1-199  TFVCPTEIVA FSDRAAEFHK LNCEVLGVSV DSQFTHLAWI NTPRKEGGLG 
ENSP00000301522/1-198     TFVCPTEIIA FSNRAEDFRK LGCEVLGVSV DSQFTHLAWI NTPRKEGGLG 
bmy_04868T0/1-198         TFVCPTEIIA FSERAEEFHK LNCDVLGVSV DSQFTHLAWI NTPRKEGGLG 
BACU003983/1-198          TFVCPTEIIA FSERAEEFHK LNCDVLGVSV DSQFTHLAWI NTPRKEGGLG 


                          101                                                150
ENSTTRP00000003365/1-195  PLNIPLLADV TRSLSRDYGV LKEDEGIAYR GLFIIDGKGV LRQITINDLP 
ENSBTAP00000015996/1-199  PLNIPLLADV TRKLSSDYGV LKEDEGIAYR GLFVIDGKGV LRQVTINDLP 
ENSP00000301522/1-198     PLNIPLLADV TRRLSEDYGV LKTDEGIAYR GLFIIDGKGV LRQITVNDLP 
bmy_04868T0/1-198         PLNIPLLADV TRSLSRDYGV LKEDEGIAYR GLFIIDGKGV LRQITINDLP 
BACU003983/1-198          PLNIPLLADV TRSLSRDYGV LKEDEGIAYR GLFIIDGKGV LRQITINDLP 


                          151                                                200
ENSTTRP00000003365/1-195  VGRSVDEALR LVQAFQYTDE HGEVCPAGWM PGSDTIKPNV DDSKEYFSKH 
ENSBTAP00000015996/1-199  VGRSVDEALR LVQAFQYTDE HGEVCPAGWT PGSDTIKPNV DDSKEYFSKH 
ENSP00000301522/1-198     VGRSVDEALR LVQAFQYTDE HGEVCPAGWK PGSDTIKPNV DDSKEYFSKH 
bmy_04868T0/1-198         VGRSVDEALR LVQAFQYTDE HGEVCPAGWM PGSDTIKPNV DDSKEYFSKH 
BACU003983/1-198          VGRSVDEALR LVQAFQYTDE HGEVCPAGWM PGSDTIKPNV DDSKEYFSKH 


                          201                                                250
ENSTTRP00000003365/1-195  N 
ENSBTAP00000015996/1-199  N 
ENSP00000301522/1-198     N 
bmy_04868T0/1-198         N 
BACU003983/1-198          N