KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:55 2014 Check: 00 .. Name: ENSTTRP00000007866/1-885 Len: 983 Check: 70 Weight: 1.00 Name: ENSP00000261596/1-896 Len: 983 Check: 8727 Weight: 1.00 Name: ENSBTAP00000015997/1-890 Len: 983 Check: 9244 Weight: 1.00 Name: bmy_17738T0/1-923 Len: 983 Check: 8296 Weight: 1.00 Name: BACU014686/1-925 Len: 983 Check: 4264 Weight: 1.00 // 1 50 ENSTTRP00000007866/1-885 MNYVGQLAGQ VIVTVKELYK GINQATLSGC IDVVVVRQQD GSYQCSPFHV ENSP00000261596/1-896 MNYVGQLAGQ VIVTVKELYK GINQATLSGC IDVIVVQQQD GSYQCSPFHV ENSBTAP00000015997/1-890 MNYVGQLAGQ VIVTVKELYK GINQATLSGC IDVVVVRQQD GSYQCSPFHV bmy_17738T0/1-923 MNYVGQLAGQ VIVTVKELYK GINQATLSGC IDVVVVRQQD GSYQCSPFHV BACU014686/1-925 MNYVGQLAGQ VIVTVKELYK GINQATLSGC IDVVVVRQQD GSYQCSPFHV 51 100 ENSTTRP00000007866/1-885 RFGKLGVLRS KEKVIDIEIN GDAVDLHMKL GDNGEAFFVE ETEEEYEELP ENSP00000261596/1-896 RFGKLGVLRS KEKVIDIEIN GSAVDLHMKL GDNGEAFFVE ETEEEYEKLP ENSBTAP00000015997/1-890 RFGKLGVLRS KEKVIDIEIN GDAVDLHMKL GDNGEAFFVE ETEEEYEKLP bmy_17738T0/1-923 RFGKLGVLRS KEKVIDIEIN GDAVDLHMKL GDNGEAFFVE ETEEEYEGLP BACU014686/1-925 RFGKLGVLRS KEKVIDIEIN GDAVDLHMKL GDNGEAFFVE ETEEEYEGLP 101 150 ENSTTRP00000007866/1-885 AYLATSPIPT EDQFFTDIDP PLVKPGGSER PSQSSDVSHV LETETVFTPS ENSP00000261596/1-896 AYLATSPIPT EDQFFKDIDT PLVKSGGDET PSQSSDISHV LETETIFTPS ENSBTAP00000015997/1-890 AYLATSPIPT EDQFFTDVDS PLVKPGGNER PSQSSDVAHI LEAETVFTPS bmy_17738T0/1-923 AYLATSPIPT EHQFFTDIDP PLVKPGGSER PSQSSDVSHI LETETVFTPS BACU014686/1-925 AYLATSPIPT EHQFFTDIDP PLVKPGGSER PSQSSDVSHI LETETVFTPS 151 200 ENSTTRP00000007866/1-885 SVKKKKRRRK KCKQDSKKDE QAASPAAEDA VGVGLSSDDD EAAQSAR--- ENSP00000261596/1-896 SVKKKKRRRK KYKQDSKKEE QAASAAAEDT CDVGVSSDDD KGAQAAR--- ENSBTAP00000015997/1-890 SVKKKKRRRK KCKQDSKKEE QAVSPPAEDA TGVDLSSDDD KGAQSAR--- bmy_17738T0/1-923 SVKKKKRRRK KCKQDSKKEE QAASP-AEAA AGAELSSDDD KAAQAAR--- BACU014686/1-925 SVKKKKRRRK KCKQDSKKEE QAASP-AEAA AGAELSSDDD KAAQAARCTK 201 250 ENSTTRP00000007866/1-885 ---------- ---------- -----GSSNA SLKEDEYKEP LLFHSGDHYP ENSP00000261596/1-896 ---------- ---------- -----GSSNA SLKEEECKEP LLFHSGDHYP ENSBTAP00000015997/1-890 ---------- ---------- -----KSSNA SLKEEEHKEP LLFHSGDHYP bmy_17738T0/1-923 ---------- ---------- -----GSSNA SLKEEEYKEP LLFHSGDHYP BACU014686/1-925 CAVRHLAAAL KYRLKPTGSV SHFTQGSSNA SLKEEEYKEP LLFHSGDHYP 251 300 ENSTTRP00000007866/1-885 LSDGDWSPLD TPYTPAVCPK SDSELEVKPT GSLLRSESHM EWTWGGFPES ENSP00000261596/1-896 LSDGDWSPLE TTYPQTACPK SDSELEVKPA ESLLRSESHM EWTWGGFPES ENSBTAP00000015997/1-890 LSDGDWSPLD NPYPPVACPK SDSELEVKPA GSLLRSESHM EWTWGGFPES bmy_17738T0/1-923 LSDGDWSPLD NPYSPAACPK SDSELEVKPA GSLLRSESHM EWTWGGFPES BACU014686/1-925 LSDGDWSPLD NPYSPAACPK SDSELEVKPA GSLLRSESHM EWTWGGFPES 301 350 ENSTTRP00000007866/1-885 TKVSKRERS- ---RTAMITP SENTHFRVIP SEDNLLSEVE KDASMGETVC ENSP00000261596/1-896 TKVSKRERSD HHPRTATITP SENTHFRVIP SEDNLISEVE KDASMEDTVC ENSBTAP00000015997/1-890 TKVSKRERSE HHPRTAMITL SENTHFRVIP SEDSLLSEVE KDASMGETVC bmy_17738T0/1-923 TKVSKRERS- ---RTAMITP SENTHFRVIP SEDNLLSEVE KDASMGETVC BACU014686/1-925 TKVSKRERS- ---RTAMITP SENTHFRVIP SEDNLLSEVE KDASVGETVC 351 400 ENSTTRP00000007866/1-885 TIVKPKPRAP GKQRSGAALA SGPREPPEGS -------DAH H-PPPPSFAE ENSP00000261596/1-896 TIVKPKPRAL GTQMSDPTSV AELLEPPLES TQISSMLDAD H-LPNAALAE ENSBTAP00000015997/1-890 TIVKPKPRAP GKQHGGAALA AGPQEPPAGL -------DAP HLPPSPPFVE bmy_17738T0/1-923 TIVKPKPRAP GKQRSGAALA SGPQEPPEGS -------DAH H-PPPPSFAE BACU014686/1-925 TIVKPKPRAP GKQRSAAALA SGPREPPEGS -------DAH H-PPPPSFAE 401 450 ENSTTRP00000007866/1-885 APSEAKPAAK ADSPSKK--- ---------- ---------- ---------- ENSP00000261596/1-896 APSESKPAAK VDSPSKK--- ---------- ---------- ---------- ENSBTAP00000015997/1-890 APSEARPAAK VDSPSKK--- ---------- ---------- ---------- bmy_17738T0/1-923 APSEAKPAAK VDSPSKKRGP RIIHVRAGER MRDSARVYWA AVRSATLTPS BACU014686/1-925 APSEAKPAAK VDSPSKK--- ---------- ---------- ---------- 451 500 ENSTTRP00000007866/1-885 ---------- --RGVHKRSQ HQGPDDIYLD DLKALEPEVA ALYFPKXXXX ENSP00000261596/1-896 ---------- --KGVHKRSQ HQGPDDIYLD DLKGLEPEVA ALYFPKSESE ENSBTAP00000015997/1-890 ---------- --RGVHKRSQ HQGPDDIYLD DLKALEPEVA ALYFPKSESE bmy_17738T0/1-923 SIRMDAENPH RERGVHKRSQ HQGPDDIYLD DLKALEPEVA ALYFPKSESE BACU014686/1-925 ---------- --RGVHKRSQ HQGPDDIYLD DLKALEPEVA ALYFPKSESE 501 550 ENSTTRP00000007866/1-885 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261596/1-896 PGSRQWPESD TLSGSQSPQS VGSAAADSGT ECLSDSAMDL PDVTLSLCGG ENSBTAP00000015997/1-890 PGSRQWPESD TLSGSQSPQS VGSAAADSGT ECLSDSAMDL PDVTLSLCGG bmy_17738T0/1-923 PGSRQWPEAD TLSGSQSPQS VGSAAADSGT ECLSDSAMDL PDVTLSLCGG BACU014686/1-925 PGSRQWPEAD TLSGSQSPQS VGSAAADSGT ECLSDSAMDL PDVTLSLCGG 551 600 ENSTTRP00000007866/1-885 XXXXXXXXXX KFMEHIITYH EFAENPGLID NPNLVIRIYN RYYNWALAAP ENSP00000261596/1-896 LSENGEISKE KFMEHIITYH EFAENPGLID NPNLVIRIYN RYYNWALAAP ENSBTAP00000015997/1-890 LSENGEISKE KFMEHIITYH EFAENPGLID NPNLVIRIYN RYYSWALAAP bmy_17738T0/1-923 LSENGEISKE KFMEHIITYH EFAENPGLID NPNLVIRIYN RYYNWALAAP BACU014686/1-925 LSENGQISKE KFMEHIITYH EFAENPGLID NPNLVIRIYN RYYNWALAAP 601 650 ENSTTRP00000007866/1-885 MILSLQVFQK SLPKATVESW VKDKMPKKSG RWWFWRKRES ITKQLPEAKE ENSP00000261596/1-896 MILSLQVFQK SLPKATVESW VKDKMPKKSG RWWFWRKRES MTKQLPESKE ENSBTAP00000015997/1-890 MVLSLQVFQK SLPKATVESW VKDKMPKKSG RWWFWRKRES ITKQLPEAKE bmy_17738T0/1-923 MILSLQVFQK SLPKATVESW VKDKMPKKSG RWWFWRKRES ITKQLPETKE BACU014686/1-925 MILSLQVFQK SLPKATVESW VKDKMPKKSG RWWFWRKRES ITKQLPETKE 651 700 ENSTTRP00000007866/1-885 GKSEVPPPID RPSSAKEPAS GRPAEEDSSS DEGSQELEES IQVDPIPTEP ENSP00000261596/1-896 GKSEAPPASD LPSSSKEPAG ARPAENDSSS DEGSQELEES ITVDPIPTEP ENSBTAP00000015997/1-890 GKAEVPPPSD RPSGAKEPAS GRSAEDDSSS DEGSQELEES IKVDSAPTEP bmy_17738T0/1-923 GKSEVPPPID RPSSTKEPAS GRPAEEDSSS DEGSQELEES IQVDPIPTEP BACU014686/1-925 GKSEEPPAID RPSSAKEPAS GRPAEEDSSS DEGSQELEES IQVDPIPTEP 701 750 ENSTTRP00000007866/1-885 PSHSSTTSYK KSLRLSSDQI AKLKLQDGPN DVVFSITTQY QGTCRCAGTI ENSP00000261596/1-896 LSHGSTTSYK KSLRLSSDQI AKLKLHDGPN DVVFSITTQY QGTCRCAGTI ENSBTAP00000015997/1-890 PSHSGTTSYK KSLRLSSDQI AKLNLQDGPN DVVFSITTQY QGTCRCAGTI bmy_17738T0/1-923 LSHSSTTSYK KSLRLSSDQI ---------- ---------Y QGTCRCAGTI BACU014686/1-925 PSHSSTTSYK KSLRLSSDQI AKLKLQDGPN DVVFSITTQY QGTCRCAGTI 751 800 ENSTTRP00000007866/1-885 YLWDWNDKVI ISDIDGTITK SDALGQILPQ LGKDWTHQGI AKLYHSINE- ENSP00000261596/1-896 YLWNWNDKII ISDIDGTITK SDALGQILPQ LGKDWTHQGI AKLYHSINE- ENSBTAP00000015997/1-890 YLWNWNDKVI ISDIDGTITK SDALGQILPQ LGKDWTHQGI AKLYHSINE- bmy_17738T0/1-923 YLWDWNDKVI ISDIDGTITK SDALGQILPQ LGKDWTHQGI AKLYHSINDQ BACU014686/1-925 YLWDWNDKVI ISDIDGTITK SDALGQILPQ LGKDWTHQGI AKLYHSINDQ 801 850 ENSTTRP00000007866/1-885 ---------- --NGYKFLYC SARAIGMADM TRGYLHWVND KGTILPRGPL ENSP00000261596/1-896 ---------- --NGYKFLYC SARAIGMADM TRGYLHWVND KGTILPRGPL ENSBTAP00000015997/1-890 ---------- --NGYKFLYC SARAIGMADM TRGYLHWVND KGTILPRGPL bmy_17738T0/1-923 STQAKQDAFS FRNGYKFLYC SARAIGMADM TRGYLHWVND KGTILPRGPL BACU014686/1-925 STRTKQDAFS FRNGYKFLYC SARAIGMADM TRGYLHWVND KGTILPRGPL 851 900 ENSTTRP00000007866/1-885 MLSPSSLFSA FHREVIEKKP EKFKIECLND IRNLFAPSKQ PFYAAFGNRP ENSP00000261596/1-896 MLSPSSLFSA FHREVIEKKP EKFKIECLND IKNLFAPSKQ PFYAAFGNRP ENSBTAP00000015997/1-890 MLSPSSLFSA FHREVIEKKP EKFKIECLTD IKNLFAPAQQ PFYAAFGNRP bmy_17738T0/1-923 MLSPSSLFSA FHREVIEKKP EKFKIECLND IKNLFAPSKQ PFYAAFGNRP BACU014686/1-925 MLSPSSLFSA FHREVIEKKP EKFKIECLND IKNLFAPSKQ PFYAAFGNRP 901 950 ENSTTRP00000007866/1-885 NDVYAYTQVG VPDCRIFTVN PKGELIQERT KGNKSSYHRL SELVEHVFPL ENSP00000261596/1-896 NDVYAYTQVG VPDCRIFTVN PKGELIQERT KGNKSSYHRL SELVEHVFPL ENSBTAP00000015997/1-890 NDVYAYRQVG VPDCRIFTVN PKGELIQERT KGNKSSYHRL SELVEHVFPL bmy_17738T0/1-923 NDVYAYTQVG VPDCRIFTVN PKGELIQERT KGNKSSYHRL SELVEHVFPL BACU014686/1-925 NDVYAYTQVG VPDCRIFTVN PKGELIQERT KGNKSSYHRL SELVEHVFPL 951 1000 ENSTTRP00000007866/1-885 LNKEQNSAFP CPEFSSFCYW RDPIPEVDLD DLA ENSP00000261596/1-896 LSKEQNSAFP CPEFSSFCYW RDPIPEVDLD DLS ENSBTAP00000015997/1-890 LNKEQNSAFL CPEFSSFCYW REPIPEVDLE DLV bmy_17738T0/1-923 LNKEQNSAFP CPEFSSFCYW RDPIPEVDLD DLA BACU014686/1-925 LNKEQNSAFP CPEFSSFCYW RDPIPEVDLD DLA