KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:56 2014 Check: 00 .. Name: ENSP00000472808/1-871 Len: 994 Check: 3982 Weight: 1.00 Name: ENSBTAP00000016000/1-877 Len: 994 Check: 5761 Weight: 1.00 Name: ENSTTRP00000001064/1-924 Len: 994 Check: 6486 Weight: 1.00 Name: bmy_06352T0/1-538 Len: 994 Check: 9739 Weight: 1.00 Name: BACU011058/1-930 Len: 994 Check: 5091 Weight: 1.00 // 1 50 ENSP00000472808/1-871 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016000/1-877 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001064/1-924 PGPQSRGRLM FLLLLLLEVL GAPQRGVSPR RKGHFLRRGS LMEDSAAGPA bmy_06352T0/1-538 ---------- ---------- ---------- ---------- ---------- BACU011058/1-930 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000472808/1-871 --MAEEFVTL KDVGMDFTLG DWEQLGLEQG DTFWDTALDN CQDLFLLDPP ENSBTAP00000016000/1-877 --AFQEIATL KDIAMDFTSE NWEQLGQGQG DLFWDMALDN YWNLFLLNPP ENSTTRP00000001064/1-924 LAMTEEFATL EDVAMDFTLE DWEQLGLDQG DLFWDTALDN YQNLFLLNSP bmy_06352T0/1-538 --MTKEFATL KDVAMDFTLE DWEQLGLDQG DLFWDTALDN YQDLFLLNPP BACU011058/1-930 --MAEEFATL KDVAMDFTLE DWEQLGLDQG DLFWDTALDN YQDLFLLNPP 101 150 ENSP00000472808/1-871 RPNLTSHPDG SEDLEPLAGG SPEATSPDVT ETKNSPLMED FFEEGFSQEI ENSBTAP00000016000/1-877 GPNLTFHPDG GEKLEALVKE SPEST--DTG IAETSPLPQD FLEAGLFQEI ENSTTRP00000001064/1-924 RPNLTSHPDD GEELAALAKG SPESTGPDTA EAKTSPLPQD FLDEGIFQEI bmy_06352T0/1-538 RPNLTSHPDD GEELAALARG SPESTGPDTA EGKTAPLPQD FLEEGLSQEI BACU011058/1-930 RPNLTSHPDD GEELAALAKG SPESTGPDTA EGKTSPLPQD FLEEGLSQEI 151 200 ENSP00000472808/1-871 IEMLSKDGFW NSNFGEACIE DTWLDSLLGD PESLLRSDIA TNGESPTECK ENSBTAP00000016000/1-877 TETFSKDDLW NSHLGEASIG QTWLDSLLGD SESLLRSDII -SLESPTECK ENSTTRP00000001064/1-924 TEMFSKDGLW NSHLEEAYID QSWLDSLLGD PESLLKSDIV TSKESPTECK bmy_06352T0/1-538 TEMFSKDGLW NSHLEEACIG QSWLDSLLGD PESLLKSNIV TSKESPTECK BACU011058/1-930 TEMFSKDGLW NSHLEEACIG QSWLDSLLGD PESLLKSNVV TSKESPTECK 201 250 ENSP00000472808/1-871 SHE-----LK RGLSPVSTVS TGEDSMVHNV SEKTLTPAKS KEYRGEFFSY ENSBTAP00000016000/1-877 SHKFKSHELK IDLSPESHLS PGAGSMTLDL PEKSLAPAKS QECGNDFGCY ENSTTRP00000001064/1-924 SQELESHKLK RGLGPKSLPF PGAGSVTPDL PERSLTPAKS QESGNDFGCY bmy_06352T0/1-538 SHELESYKLK TGLGPKSLLF PGAGSVTLDL PERSLTPAKS QESGNDFGCY BACU011058/1-930 SHELESHKLK RGLGPKSLLC PGAGSVTLDL PERSLTPAKS QESGNDFGCY 251 300 ENSP00000472808/1-871 SDHSQQDSVQ EGEKPYQCSE CGKSFSGSYR LTQHWITHTR EK-PTVHQEC ENSBTAP00000016000/1-877 SDHSQHDTIQ GGEKPYECSE CGKSFSQSYH MIQHWILHNR EQHPTVLQEY ENSTTRP00000001064/1-924 SDQSQQDNIQ GGEKPYKCGQ CEKSFSQSYH LIQHWILHTR ED-PTVPQEN bmy_06352T0/1-538 SDQSQQDNIQ GGEKPYKCSQ CEKSFSQSYR LIQHWILHTR ED-PTVLQEY BACU011058/1-930 SDQSQQDNIQ GGEKPYKCSQ CEKSFSQSYR LIQHWILHTR ED-PTVLQEY 301 350 ENSP00000472808/1-871 EQGFDRNASL SVYPKTHTGY KFYVCNEYGT TFSQSTY-LW HQKTHTGEKP ENSBTAP00000016000/1-877 EKDVNQRSCL SMQPVTHTGY KSYVYNKFGE TFSENTHLLC HQKVHTEEEP ENSTTRP00000001064/1-924 EKDVNQSSCL FVQPVSHTGS KSYVGNKCGK TSSQNTYLLW HQNIHSEEEP bmy_06352T0/1-538 EKDVNQSSCL FVQSVTHTGS KSYVGNKCGK TSSQNTHLLW HQNIHSEEKP BACU011058/1-930 EKDVNQSSCL FVQSVTHTGS KSYVGNKCGK TSSQNTHLLW HQNIHSEEKP 351 400 ENSP00000472808/1-871 CKSQDSDHPP SHDTQPGEHQ KTHTDSKSYN CNECGKAFTR IFHLTRHQKI ENSBTAP00000016000/1-877 WESQDGDCPA DHNSQPFECH KPPP-GKTYN CKECGQSFSQ TFHLSVHQKT ENSTTRP00000001064/1-924 CKSQDSDGPA GQDSQPVECH KPPPGGKSDK CNEYGESSAK PFHLTRYQKT bmy_06352T0/1-538 RKXQDSDGPA GHDSQPVECH KTPPGGKSYK CNECGESFSQ TFHLTRHQKT BACU011058/1-930 CKSQDSDGPA GHDSQPVERH KPPSGGKSYK CNECGESFSR AFHLTRHQKT 401 450 ENSP00000472808/1-871 HTRKRYECSK CQATFNLRKH LIQHQKTHAA KTTSECQECG KIFRHSSLLI ENSBTAP00000016000/1-877 HTQKCYECAK CKATFNSNRY LLQHQKIHAA KMIPEDQECG KACKQSSFLV ENSTTRP00000001064/1-924 HTRKLYECAR CKAIFNFNKY LLQHQKIHAA EKTAVCHECG KAFRRSSLLV bmy_06352T0/1-538 HTRKRYECAR CKAIFNFNKY LLQHQKIHAA KTTA------ ---------- BACU011058/1-930 HTRKRYECAR CKAIFNFNKY LLQHQKIHAA KTTAVCQECG KAFRRSSLLV 451 500 ENSP00000472808/1-871 EHQALHAGEE PYKCNERGKS FRHNSTLKIH QRVHSG-EKP YKCSECGKAF ENSBTAP00000016000/1-877 QQQSVHTAEK PYKCDECEKT FSHSLALKIH QRVHSG-EKN YKCNECGKAF ENSTTRP00000001064/1-924 -HQSVHTG-K PY-CDECKR- FSHILTLXXX XXXXXX-XXX XXXXXXXXXX bmy_06352T0/1-538 ---------- ---------- ---------- ---------- ---------- BACU011058/1-930 KHQSVHTGEK PYKCDECGKL FSHILTLKTH QKVHRGDEKP YKCNKCGKAF 501 550 ENSP00000472808/1-871 HRHTHLNEHR RIHTGYRPHK CQECVRSFSR PSHLMRHQAI HTAEKPYSCA ENSBTAP00000016000/1-877 YRNSHLSEHQ RVHTGYRPHK CHKCVKSFSR PSHLIRHLSM HATEKLYSCA ENSTTRP00000001064/1-924 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06352T0/1-538 ---------- ---------- ---------- ---------- ---------- BACU011058/1-930 YRNTHLNEHH RVHTGYRPHK CHKCIKSFTR PSHLNRHLSI HATEKPYSCA 551 600 ENSP00000472808/1-871 ECKETFSDNN RLVQHQKMHT VKTPYECQEC GERFICGSTL KCHESVHARE ENSBTAP00000016000/1-877 KCKKTFSHNE HLVQHQKIHA VETP-ECQEC GEQLVCRSTL ICHQSIHNRE ENSTTRP00000001064/1-924 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06352T0/1-538 ---------- ----HQKIHA VETPYECQEC GERFICHSTL TCHQSIHTRE BACU011058/1-930 ECKETFSHNE HLVQHQKIHA VETPYECQEC GERFICHSTL TCHQSIHTRE 601 650 ENSP00000472808/1-871 KQGFFVSGKI LDQNPEQK-- ----EKCFKC NKCEKTFSCS KYLTQHERIH ENSBTAP00000016000/1-877 K-GLSESQEI LYEKPEHREH PRICGKRFKC NKCEKTFHCR KYLTQHKLIH ENSTTRP00000001064/1-924 XXXXXXXXXX XXXNPEHR-- ----EKRFKC NKCEKTFSCS KYLTQHERIH bmy_06352T0/1-538 KQGLDESRKI LNENPEQREP PRVSEKRFKC NKCEKTFSCS KYLTQHERIH BACU011058/1-930 KQGLDKSRKI LNENPEQREP PRVSEKRFKC NKCEKTFSCS KYLTQHERIH 651 700 ENSP00000472808/1-871 TRGVKPFECD QCGKAFGQST RLIHHQRIHS RVRLYKWGEQ GKA-ISSASL ENSBTAP00000016000/1-877 AR-VKPFECN HCGKAFGQSS HLIWHQKIHS RLRSYRCGDC GKAFIYRTSL ENSTTRP00000001064/1-924 VR-VKPFECN QCGKAFSQSS QLIRHQRIHS GVRPYECRDC GMAFVHSASL bmy_06352T0/1-538 SR-VKPFECN QCGKAFGQSS QLIRHQRTHS GVRPYECGDC GKAFVHSASL BACU011058/1-930 AR-VKPFECN QCGKAFGQSS QLIRHQRIHS GVRPYECGDC GKAFVRSASL 701 750 ENSP00000472808/1-871 IKLQSFHTKE HPFKCNECGK TFSHSAHLSK HQLIHAGENP FKCSKCDRVF ENSBTAP00000016000/1-877 IKHQSLHVIE HPFKCNECGR IFSQSACLLE HQLIHTTKKP LIPNKCD-VL ENSTTRP00000001064/1-924 AKHQSTHKSE HPFQCNKSGK TFSQSACLSE HQLIQTAEEP FKPNKCDEVF bmy_06352T0/1-538 AKHQSTHKI- ---------- ---------- ---------- ---------- BACU011058/1-930 AKHQSTHKSE HPFQCNKCGM TFSQSACLSE HQLIQTAEKP FKPNKCDEVF 751 800 ENSP00000472808/1-871 TQRNYLVQHE RT-------- ---------- ---------- ---------- ENSBTAP00000016000/1-877 AHSNHLIQHQ RV-------- ---------- ---------- ---------- ENSTTRP00000001064/1-924 AYSNHLVQHQ GT-------- ---------- ---------- ---------- bmy_06352T0/1-538 --NEYFVNHE GS-------- ---------- ---------- ---------- BACU011058/1-930 AYSNHLVQHQ GTQAGKKPFE QNECGKTSQQ SSCLSKHQRI HTGEKPYECG 801 850 ENSP00000472808/1-871 ---------- --------HA RKKPLVCNEC GKTFRQSSCL SKHQRIHSGE ENSBTAP00000016000/1-877 ---------- --------HT GEKPYICQEC GKTFSQSSCF SKHQRIHKGE ENSTTRP00000001064/1-924 ---------- --------QA GKKPFEQNEC GKTSQQSSCL SKHQRIHTGE bmy_06352T0/1-538 ---------- ---------- ---------- ---------- ---------- BACU011058/1-930 DCGKTFNLGT QLIRHQRVHT GEKPYVCQEC GKAFSQSSCF SKHQRVHTGE 851 900 ENSP00000472808/1-871 KPYVCDYCGK AFGLSAELVR HQRIHTGEKP YVCQECGKAF TQSSCLSIHR ENSBTAP00000016000/1-877 KSYKCDSGGK AFIRGTPLIQ HQRIHTGEKP YVCQECGEAF QQGSCLSKHQ ENSTTRP00000001064/1-924 KPYECGDCGK TFNLGAQLIR HRRIHTGEKP YVCQECGKAF SQSSCFSKHQ bmy_06352T0/1-538 ---------- ---------- HRR------- ---------- ---------- BACU011058/1-930 KPYKCGDCGK TFSLGAALIR HRRIHTGEKP YVCQECGKAF SQSSCLSKHQ 901 950 ENSP00000472808/1-871 RVHTGEKPYR CGECGKAFAQ KANLTQHQRI HTGEKPYSCN VCGKAFVLSA ENSBTAP00000016000/1-877 RVHTREKLYV CAKCGKAFAQ KTNLMQHETT HTGEKPYACG VCGRAFRLRA ENSTTRP00000001064/1-924 RVHTGEKPYE CGECGKAFTQ KANLMQHQRT HTGEKPYACD VCGKAFGLRA bmy_06352T0/1-538 ---------- ---------- ---------- ---------- ---------- BACU011058/1-930 RVHSGEKPYV CAVCGKAFAQ KANLMQHQRT HTGEKPYACD VCGKAFGLRA 951 1000 ENSP00000472808/1-871 HLNQHLRVHT QETLYQCQRC QKAFRCHSSL SRHQRVHNKQ QYCL ENSBTAP00000016000/1-877 HLSQHQRIHT QEKSYQCQHC QKALCCCSGL SRQQRIRYNK YTLL ENSTTRP00000001064/1-924 HLSQHQRIHT KEKPHQCPHC QKALCCCLGL SRHQ-VHSRQ FCPW bmy_06352T0/1-538 ---------- ---------- ---------- ---------- ---- BACU011058/1-930 HLSQHQRIHT KEKPHQCPHC QKALCCCSGL SQHQ------ ----