KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:58:01 2014 Check: 00 .. Name: bmy_08413T0/1-340 Len: 400 Check: 9126 Weight: 1.00 Name: ENSP00000345464/1-395 Len: 400 Check: 4208 Weight: 1.00 Name: ENSTTRP00000006743/1-395 Len: 400 Check: 2738 Weight: 1.00 Name: ENSBTAP00000016029/1-398 Len: 400 Check: 3333 Weight: 1.00 // 1 50 bmy_08413T0/1-340 ----MGAEAS GSGPALRELV REAEISLLEC KVCFERFGHR QQRRPRNLPC ENSP00000345464/1-395 ----MAAEAS ESGPALHELM REAEISLLEC KVCFEKFGHR QQRRPRNLSC ENSTTRP00000006743/1-395 ----MGAEAS GSGPALRELV REAETSLLEC KVCFERFGHR QQRRPRNLPC ENSBTAP00000016029/1-398 GGRAMGAEAA GSGPALRELL REAETSLLEC KVCFERFGHR QQRRPRNLSC 51 100 bmy_08413T0/1-340 GHVVCLACVA ALAHPRTLAL ECPFCRRACR GCDTSDCLPV LHLLELLGSA ENSP00000345464/1-395 GHVVCLACVA ALAHPRTLAL ECPFCRRACR GCDTSDCLPV LHLIELLGSA ENSTTRP00000006743/1-395 GHVVCLACVA ALAHPRTLAL ECPFCRRACR GCDTSDCLPV LHLLELLGSA ENSBTAP00000016029/1-398 GHVVCLACVA ALAHPRTLAL ECPFCRRACR GCDTSDCLPV LHFLELLGSA 101 150 bmy_08413T0/1-340 LRPAPAAPRS APSAPGVLTC HHAFGGWGTL VNPTGLALCP KTGRVVVVHD ENSP00000345464/1-395 LRQSPAAHRA APSAPGALTC HHTFGGWGTL VNPTGLALCP KTGRVVVVHD ENSTTRP00000006743/1-395 LRPAPAAPRA APSAPGVLTC HHAFGGWGTL VNPTGLALCP KTGRVVVVHD ENSBTAP00000016029/1-398 LRPGPAAPRA APSAPGVLTC QHAFGGWGTL VNPTGLALCP KTGRVVVVHD 151 200 bmy_08413T0/1-340 GRRRVKIFDA GGGCAHQFGE KGDAAQDIRY PLDVTVTNDC HVVVTDAGDR ENSP00000345464/1-395 GRRRVKIFDS GGGCAHQFGE KGDAAQDIRY PVDVTITNDC HVVVTDAGDR ENSTTRP00000006743/1-395 GRRRVKIFDA GGGCAHQFGE KGDAAQDIRY PLDVTVTNDC HVVVTDAGDR ENSBTAP00000016029/1-398 GKRRVKVFDS GGGCAHQFGE KGDAAQDLRY PVDVTVTNDC HVVVTDAGDR 201 250 bmy_08413T0/1-340 SIKVFDFFGQ IKLVIGGQFS LPWGVETTPQ NGVMVTDAEA GSLHLLEVDF ENSP00000345464/1-395 SIKVFDFFGQ IKLVIGGQFS LPWGVETTPQ NGIVVTDAEA GSLHLLDVDF ENSTTRP00000006743/1-395 SIKVFDFFGQ IKLVIGGQFS LPWGVETTPQ NGVMVTDAEA GSLHLLEIDF ENSBTAP00000016029/1-398 SLKVFDFFGQ IKLVLGGHFC LPWGVETTPQ NGVLVTDAEA GSLHLLEVDF 251 300 bmy_08413T0/1-340 PEGVFRRTER LQTHLCHPRG VAVSWLTGAI AVLEHPLAVG TGAC-STTVK ENSP00000345464/1-395 AEGVLRRTER LQAHLCNPRG VAVSWLTGAI AVLEHPLALG TGVC-STRVK ENSTTRP00000006743/1-395 PEGVLRRTER LQTHLCHPRG VAVSWLTGAI AVLEHPLAVG TGAC-STTVK ENSBTAP00000016029/1-398 PEGVLRRTER LQAHLRHPRG VAVSWLTGAI AVLEHPL--G PGACSSTTVK 301 350 bmy_08413T0/1-340 VFSASMQLIG QA-------- ---------- ----QGQQRN VSANYPTIQT ENSP00000345464/1-395 VFSSSMQLVG QVDTFGLSLY FPSKITASAV TFDHQGNVIV ADTSGPAILC ENSTTRP00000006743/1-395 VFSASMQLIG QVDAFGLSLF FPSKITASAV TFDHQGNVIV ADTSNLAVLC ENSBTAP00000016029/1-398 VFSASMQLIG QVDSFGLSLF FPSKITASAV AFDHQGNVVV ADTSSPAVLC 351 400 bmy_08413T0/1-340 LSPDIRY--- ---------- ---------- ----LTNSQL QLRI------ ENSP00000345464/1-395 LGKPEEFPVP KPMVTHGLSH PVALTFTKEN SLLVLDTASH SIKVYKVDWG ENSTTRP00000006743/1-395 LGKPEEFPVL KPIITHGLSH PVALTFTKEN SLLVLDSAAH SIKVYKVDWG ENSBTAP00000016029/1-398 LGKPEEFPVL KPIITHGLSH PVALTFTKES SLLVLDSAAH SVKVYKVDWG