KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:02 2014 Check: 00 .. Name: ENSP00000285873/1-1508 Len: 1528 Check: 4569 Weight: 1.00 Name: ENSBTAP00000016037/1-1513 Len: 1528 Check: 2767 Weight: 1.00 Name: ENSTTRP00000015120/1-1506 Len: 1528 Check: 2457 Weight: 1.00 Name: bmy_06211T0/1-1500 Len: 1528 Check: 3744 Weight: 1.00 Name: BACU000770/1-1511 Len: 1528 Check: 6850 Weight: 1.00 // 1 50 ENSP00000285873/1-1508 MGQEPRTLPP SPNWYCARCS DAVPGGLFGF AARTSVFLVR VGPGAGESPG ENSBTAP00000016037/1-1513 MGQEPRTLPP SPNWYCSRCS DAVPGGLFGF AARTSVFLVR VGPGADAIPG ENSTTRP00000015120/1-1506 MGQEPRTLPP SPNWYCSRCS DAVPGGLFGF AARTSVFLVR VGPGADVIPG bmy_06211T0/1-1500 MGQEPRTLPP SPNWYCSRCS DAVPGGLFGF AARTSVFLVR VGPGADVIPG BACU000770/1-1511 MGQEPRTLPP SPNWYCSRCS DAVPGGLFGF AARTSVFLVR VGPGADVIPG 51 100 ENSP00000285873/1-1508 TPPFRVIGEL VGHTERVSGF TFSHHPGQYN LCATSSDDGT VKIWDVETKT ENSBTAP00000016037/1-1513 TPPFRVVGEL VGHTEKVSGF TFCHHPGQYN LCATSSDDGT VKIWDVGTKT ENSTTRP00000015120/1-1506 TSPFRVIGEL VGHTERVSGF TFCHHPGQYN LCATSSDDGT VKIWDVETKT bmy_06211T0/1-1500 TSPFRVIGEL VGHTERVSGF TFCHHPGQYN LCATSSDDGT VKIWDVETKT BACU000770/1-1511 TSPFRVIGEL VGHTERVSGF TFCHHPGQYN LCATSSDDGT VKIWDVETKT 101 150 ENSP00000285873/1-1508 VVTEHALHQH TISTLHWSPR VKDLIVSGDE KGVVFCYWFN RNDSQHLFIE ENSBTAP00000016037/1-1513 VVTEHALHQH TISALHWSPR VKDLIVSGDE KGVVFCYWLN RNDSQHLFIE ENSTTRP00000015120/1-1506 VVTEHALHQH TISALHWSPL VKDLLVSGDE KGVVFCYWLN RNDSQHLFIE bmy_06211T0/1-1500 VVTEHALHQH TISALHWSPL VKDLLVSGDE KGVVFCYWLN RNDSQHLFIE BACU000770/1-1511 VVTEHALHQH TISALHWSPL VKDLLVSGDE KGVVFCYWLN RNDSQHLFIE 151 200 ENSP00000285873/1-1508 PRTIFCLTCS PHHEDLVAIG YKDGIVVIID ISKKGEVIHR LRGHDDEIHS ENSBTAP00000016037/1-1513 PRTIFCLTCS PHHEDLVAIG YKDGIVVIID ISKKGEVMHR LRGHDDEIHS ENSTTRP00000015120/1-1506 PRTIFCLTCS PHHEDLVAIG YKDGIVVIID ISKKGEVIHR LRGHDDEIHS bmy_06211T0/1-1500 PRTIFCLTCS PHHEDLVAIG YKDGIVVIID ISKKGEVIHR LRGHDDEIHS BACU000770/1-1511 PRTIFCLTCS PHHEDLVAIG YKDGIVVIID ISKKGEVIHR LRGHDDEIHS 201 250 ENSP00000285873/1-1508 IAWCPLPGED CLSINQEETS EEAEITNGNA VAQAPVTKGC YLATGSKDQT ENSBTAP00000016037/1-1513 IAWCPLLGED CLSINQEENS EEPEMPNGKV ITQTPVTKGC YLATGSKDQT ENSTTRP00000015120/1-1506 IAWCPLPGED CLFINQEENS EELEIPNGKV IAQTPVKKGC YLATGSKDQT bmy_06211T0/1-1500 IAWCPLPGED CLSINQEENS EELEIPNGKV IAQTPVKKGC YLATGSKDQT BACU000770/1-1511 IAWCPLPGED CLSINQGENS EELEIPNGKV TAQTPVKKGC YLATGSKDQT 251 300 ENSP00000285873/1-1508 IRIWSCSRGR GVMILKLPFL KRRGGGIDPT VKERLWLTLH WPSNQPTQLV ENSBTAP00000016037/1-1513 IRIWSCSRGR GVMTLKLPFL KRRGGGVDPT VKERLWLTLH WPKDQPTQLV ENSTTRP00000015120/1-1506 IRIWSCSRGR VVTTLKLPFL KRRGGGIDPT VKERLWLTLH WPKGQPTQLV bmy_06211T0/1-1500 IRIWSCSRGR GVTTLKLPFL KRRGGGIDPT VKERLWLTLH WPKGQPTQLV BACU000770/1-1511 IRIWSCSRGR GVTTLKLPFL KRRGGGIDPT VKERLWLTLH WPKGQPTQLV 301 350 ENSP00000285873/1-1508 SSCFGGELLQ WDLTQSWRRK YTLFSASSEG QNHSRIVFNL CPLQTEDDKQ ENSBTAP00000016037/1-1513 SSCFGGELLL WDLTQSWRRK YTLFSGSSEG QNHSRIVFNL CPLQTEDDKQ ENSTTRP00000015120/1-1506 SSCFGGELLL WDLTQSWRRK YTLFSASSEG QNHSRIVFNL CPLQTEDDKQ bmy_06211T0/1-1500 SSCFGGELLL WDLTQSWRRK YTLFSASSEG QNHSRIVFNL CPLQTEDDKQ BACU000770/1-1511 SSCFGGELLL WDLTQSWRRK YTLFSASSEG QNHSRIVFNL CSLQTEDDKQ 351 400 ENSP00000285873/1-1508 LLLSTSMDRD VKCWDIATLE CSWTLPSLGG FAYSLAFSSV DIGSLAIGVG ENSBTAP00000016037/1-1513 LLLSISMDRD VKCWDMATLE CCWSLPSLGG FAYSLAFSPV DTGCLAIGVG ENSTTRP00000015120/1-1506 LLLSTSMDRD VKCWDMATLE CCWTLPSLGG FAYSLAFSPV DTGCLAIGAG bmy_06211T0/1-1500 LLLSTSMDRD VKCWDMATLE CCWTLPSLGG FAYSLAFSPV DTGCLAIGAG BACU000770/1-1511 LLLSTSMDRD VKCWDMATLE CCWTLPSLGG FAYSLAFSPV DTGCLAIGAG 401 450 ENSP00000285873/1-1508 DGMIRVWNTL SIKNNYDVKN FWQGVKSKVT ALCWHPTKEG CLAFGTDDGK ENSBTAP00000016037/1-1513 DGMIRVWNTL SIKNNYDVKH FWQGVKSKVT ALCWHPTKEG CLAFGTDDGK ENSTTRP00000015120/1-1506 DGMIRIWNTF SIKNNYDVKI FWQGVKSKVT ALCWHPTKEG CLAFGTDDGK bmy_06211T0/1-1500 DGMIRIWNTF SIKNNYDVKI FWQGVKSKVT ALCWHPTKEG CLAFGTDDGK BACU000770/1-1511 DGMIRIWNTF SIKNNYDVKI FWQGVKSKVT ALCWHPTKEG CLAFGTDDGK 451 500 ENSP00000285873/1-1508 VGLYDTYSNK PPQISSTYHK KTVYTLAWGP PVPPMSL--G GEGDRPSLAL ENSBTAP00000016037/1-1513 VGLYDTYSNK PPQISSTYHK KTVYSLAWGP PVPAMALVHV GEGDRPSLTL ENSTTRP00000015120/1-1506 VGLYDTYSNK PPQISSTYHK KTVYSLAWGP PVPSMAP--G GEGDRPSLTL bmy_06211T0/1-1500 VGLYDTYSNK PPQISSTYHK KTVYSLAWGP PVPSMTL--G GEGDRPSLTL BACU000770/1-1511 VGLYDTYSNK PPQISSTYHK KTVYSLAWGP PVPSMTL--G GEGDRPSLTL 501 550 ENSP00000285873/1-1508 YSCGGEGIVL QHNPWKLSGE AFDINKLIRD TNSIKYKLPV HTEISWKADG ENSBTAP00000016037/1-1513 YSCGGEGIVL QHNPWKLSGE AFDINKLIRD TNSIKYKLPV HTEISWKADG ENSTTRP00000015120/1-1506 YSCGGEGIVL QHNPWKLSGE AFDINKLIRD TNSIKYKLPV HTEISWKADG bmy_06211T0/1-1500 YSCGGEGIVL QHNPWKLSGE AFDINKLIRD TNSIKYKLPV HTEISWKADG BACU000770/1-1511 YSCGGEGIVL QHNPWKLSGE AFDINKLIRD TNSIKYKLPV HTEISWKADG 551 600 ENSP00000285873/1-1508 KIMALGNEDG SIEIFQIPNL KLICTIQQHH KLVNTISWHH EHGSQPELSY ENSBTAP00000016037/1-1513 KIMALGNEDG SIEIFKLPNL KLICSIQQHH KLVNTISWHH EHGSQPELSY ENSTTRP00000015120/1-1506 KIMALGNEDG SIEIFKVPNL KLICTIQQHH KLVNTISWHH EYGSRPELSY bmy_06211T0/1-1500 KIMALGNEDG SIEIFKVPNL KLICTIQQHH KLVNTISWHH EYGSQPELSY BACU000770/1-1511 KIMALGNEDG SIEIFKVPNL KLICTIQQHH KLVNTISWHH EYGSQPELSY 601 650 ENSP00000285873/1-1508 LMASGSNNAV IYVHNLKTVI ESSPESPVTI TEPYRTLSGH TAKITSVAWS ENSBTAP00000016037/1-1513 LMASGSNNAV IYVHNLQTVI ESNPQSPVTI TEPYRTLSGH TAKITSLAWS ENSTTRP00000015120/1-1506 LMASGSNNAV IYVHNLQTVI ESNPESPVTI TEPYRTLSGH TAKITSLAWS bmy_06211T0/1-1500 LMASGSNNAV IYVHNLQTVI ESNPESPVTI TEPYRTLSGH TAKITSLAWS BACU000770/1-1511 LMASGSNSAV IYVHNLQTVI ESNPESPVTI TEPYRTLSGH TAKITSLAWS 651 700 ENSP00000285873/1-1508 PHHDGRLVSA SYDGTAQVWD ALREEPLCNF RGHRGRLLCV AWSPLDPDCI ENSBTAP00000016037/1-1513 PHHDGRLVSA SYDGTAQVWD TLQEEPLCNF RGHRGRLLCV VWSPLDPDCI ENSTTRP00000015120/1-1506 PHHDGRLISA SYDGTAQV-D TFQEE-LCNF RGH-GRLLCI AWSPLDPDCI bmy_06211T0/1-1500 PHHDGRLISA SYDGTAQVWD TLQEEPLCNF RGHRGRLLCI AWSPLDPDCI BACU000770/1-1511 PHHDGRLISA SYDGTAQVWD TLQEEPLCNF RGHRGRLLCI AWSPLDPDCI 701 750 ENSP00000285873/1-1508 YSGADDFCVH KWLTSMQDHS RPPQGKKSIE LEKKRLSQPK AKPKKKKKPT ENSBTAP00000016037/1-1513 YSGADDFCVY KWLTSMQEHS RPPQGKKSIE LEKKRLSQPK PKPKKKKKPT ENSTTRP00000015120/1-1506 YSGADDFCVY KWLTCMQEHS R-PQGKKNIE LEKKRLSQPK PKPKKKKKPI bmy_06211T0/1-1500 YSGADDFCVY KWLTSMQEHS RPPQGKKSIE LEKKRLSQPK PKPKKKKKPI BACU000770/1-1511 YSGADDFCVY KWLTSMQEHS RPPQGKKSIE LEKKRLSQPK PKPKKKKKPI 751 800 ENSP00000285873/1-1508 LRTPVKLESI DGNEEESMKE NSGPVENGVS DQEGEEQARE PELPCGLAPA ENSBTAP00000016037/1-1513 LRVPVRQELC DGNEEESVKE SLGPIENGVS DQETEEEARE PEPPCGVTAA ENSTTRP00000015120/1-1506 LRVPVKQELC DGNEEESVKE SSGPVENGVS DQETEEEARE PELPCGVTSA bmy_06211T0/1-1500 LRVPVKQELC NGNEEESVKE SSGPVENGVS DQETEEEARE PELPCGVTSA BACU000770/1-1511 LRVPVKQELC NGNEEESVKE SSGPVENGVS DQETEEEARE PELPCGVTSA 801 850 ENSP00000285873/1-1508 VSREPVICTP VSSGFEKSKV TINNKVILLK KEPPKEKPET LIKKRKARSL ENSBTAP00000016037/1-1513 VSKEPIICTP AALGFEKSKS TINNKVTLLK KEVPKEKPEA LIKKRKARSM ENSTTRP00000015120/1-1506 VSKGPVICTP ASLGFEKSKV TINNKVTLLK REALKEKSEA LIKKRKARSM bmy_06211T0/1-1500 VSKEPVICTP ASL------- ---------- --------EA LIKKRKARSM BACU000770/1-1511 VSKEPVICTP ASLGFEKSKV TINNKVTLLK KEAPKEKPEA LIKKRKARSM 851 900 ENSP00000285873/1-1508 LPLSTSLDHR SKEELHQDCL VLATAKHSR- ELNEDVSADV EERFHLGLFT ENSBTAP00000016037/1-1513 LPLSTSLDHR SKEELHQDCL VLATAKHSTA GPNEDVSTDL EERFHLGLFT ENSTTRP00000015120/1-1506 LPLSTSLDHR SKEELHQDCL VLATAKHSR- EPKEDVSADL EERLHLGLFT bmy_06211T0/1-1500 LPLSTSLDHR SKEELHQDCL VLATAKHSRA EPKEDVSADL EQRFHLGLFT BACU000770/1-1511 LPLSTSLDHR SKEELHQDCL VLATAKHSRA EPKEDVSADL EQRFHLGLFT 901 950 ENSP00000285873/1-1508 DRATLYRMID IE-GKGHLEN GHPELFHQLM LWKGDLKGVL QTAAERGELT ENSBTAP00000016037/1-1513 DRATLYRMIE VEGGKSHLEN GHPELFHQLM LWKGDLKGVL QTAAERGELT ENSTTRP00000015120/1-1506 DRATLYRMIE VE-GKGHLEN GHPELFHQLM LWKGDLKGVL QTAAERGELT bmy_06211T0/1-1500 DRATLYRMIE VE-GKGHLEN GHPELFHQLM LWKGDLKGVL QTAAERGELT BACU000770/1-1511 DRATLYRMIE VE-GKGHLEN GHPELFHQLA LWKGDLQGAL QTAAERGELT 951 1000 ENSP00000285873/1-1508 DNLVAMAPAA GYHVWLWAVE AFAKQLCFQD QYVKAASHLL SIHKVYEAVE ENSBTAP00000016037/1-1513 DNLVAMAPVA GYHVWVWAVE AFAKQLCFQD QYVKAASHLL SIHKVYEAVE ENSTTRP00000015120/1-1506 DNLVAMAPVA GYHVWVWAVE AFAKQLCFQD QYVKAASHLL SIHKVYEAVE bmy_06211T0/1-1500 DNLVAMAPVA GYHVWVWAVE AFAKQLCFQD QYVKAASHLL SIHKVYEAVE BACU000770/1-1511 DNLVAMAPVA GYHVWVWAVE AFAKQLCFQD QYVKAASHLL SIHKVYDAVE 1001 1050 ENSP00000285873/1-1508 LLKSNHFYRE AIAIAKARLR PEDPVLKDLY LSWGTVLERD GHYAVAAKC- ENSBTAP00000016037/1-1513 LLKSNHFYRE AIAIAKARLR PEDPIIKDLY LSWGAILEKD GHYALAAKC- ENSTTRP00000015120/1-1506 LLKSNHFYXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXX- bmy_06211T0/1-1500 LLKSNHFYRE AIAIAKARLR PEDPILKDLY LSWGAILEKD GHYALAAKCF BACU000770/1-1511 LLKSNHFYRE AIAIAKARLR PEDPILRDLY LSWGAILEKD GHYALAAKC- 1051 1100 ENSP00000285873/1-1508 ---------- ---YLGATCA YDAAKVLAKK GDAASLRTAA ELAAIVGEDE ENSBTAP00000016037/1-1513 ---------- ---YLGATSA YDAAKVLAKK GDAASLRTAA ELASIVGENE ENSTTRP00000015120/1-1506 ---------- ---YLGATSA YDAAKVLAKK GDVTSLRTAA ELASIVGENE bmy_06211T0/1-1500 RCTGLSLHRD SHSYLGATSA YDAAKVLAKK GDVASLRTAA ELASIVGENE BACU000770/1-1511 ---------- ---YLGATSA YDAAKVLAKK GDVASLRTAA ELASIVGENE 1101 1150 ENSP00000285873/1-1508 LSASLALRCA QELLLANNWV GAQEALQLHE SLQGQRLVFC LLELLSRHLE ENSBTAP00000016037/1-1513 LSASLALRCA QELLLARNWV GAQEALQLHT SLKGQRLVFC LLELLSKHLE ENSTTRP00000015120/1-1506 LSATLALRCA QELLLARNWV GAQEALQLHE SLKGQRLVFC LLELLSRHLE bmy_06211T0/1-1500 LSATLALRCA QELLLARNWV GAQEALQLHE SLKGQRLVFC LLELLSKHLE BACU000770/1-1511 LSATLALRCA QELLLARNWV GAQEALQLHE SLKGQRLVFC LLELLSKHLE 1151 1200 ENSP00000285873/1-1508 EKQLSEGKSS -SSYHTWNTG TEGPFVERVT AVWKSIFSLD TPEQYQEAFQ ENSBTAP00000016037/1-1513 EKQLSEGKSS FSSYNDWPTD SEGSFVERVT AVWKSTFGLN SPEQYQAAFQ ENSTTRP00000015120/1-1506 EKQLSEGKSS SSSYNAWPAG SERPFVERVT AVWKSAFSLN SPEQSQAAFQ bmy_06211T0/1-1500 EKQLSEGKSS SSSYNAWPAG SERPFVERVT AVWKSAFSLD SPEQYQAAFQ BACU000770/1-1511 EKQLSEGKSS SSSYNAWPAG SEKPFVERVT AVWKSAFSLD SPEQYQAAFQ 1201 1250 ENSP00000285873/1-1508 KLQNIKYPSA TNNTPAKQLL LHICHDLTLA VLSQQMASWD EAVQALLRAV ENSBTAP00000016037/1-1513 QLQNIKYPSA TSNTPSKQLL LHICHDLTLA VLSQEAGSWD AAVEGLLRAV ENSTTRP00000015120/1-1506 QLQDIKYPSA TSNTPSKQLL LHICHDLTLA VLSQQVASWD AAVEGLLRAV bmy_06211T0/1-1500 QLQDIKYPSA TSNTPSKQLL LHICHDLTLA VLSQQVASWD EAVEGLLRAV BACU000770/1-1511 QLQDTKYPSA TSNTPSKQLL LHICHDLTLA VLSQQVASWD EAVEGLLRAV 1251 1300 ENSP00000285873/1-1508 VRSYDSGSFT IMQEVYSAFL PDGCDHLRDK LGDHQSPATP AFKSLEAFFL ENSBTAP00000016037/1-1513 IRSYDSGNFT IMQEVHSAFL PQGCDHLRDK LGDHQSPTTP AFKSLKAFFI ENSTTRP00000015120/1-1506 IRSYNSGNFT IMQEVHSAFL PEGCDHLRDK LGDHQSPTTP AFKSLEAFFI bmy_06211T0/1-1500 IRSYNSGNFT IMQEVHSAFL PEGCDHLRDK LGDHQSPTTP AFKSLEAFFI BACU000770/1-1511 IRSYNSGNFT IMQEVHSAFL PEGCDHLRDK LGDHQSPTTP AFKSLEAFFI 1301 1350 ENSP00000285873/1-1508 YGRLYEFWWS LSRPCPNSSV WVRAGHR-TL SVEPSQQLDT ASTEETDPET ENSBTAP00000016037/1-1513 YGCLYEFWWS LSGPCPESSV WLRAAHRSKT STEQSQEVDS VSPEETDPKP ENSTTRP00000015120/1-1506 YGRLYEFWWS LSGPCPESSV WVRAAHRRTT SVEQSQQLDN VSPEETDPKA bmy_06211T0/1-1500 YGRLYEFWWS LSGPCLESSV WVRAAHRRTT SVEQSQQLDN VSPEETDPKA BACU000770/1-1511 YGRLYEFWWS LSGPCPESSV WVRAAHRRTT SVEQSQQLDN VSPEETDPKA 1351 1400 ENSP00000285873/1-1508 SQPEPNRPSE LDLRLTEEGE RMLSTFKELF SEKHASLQNS QRTVAEVQET ENSBTAP00000016037/1-1513 SQPEPSRTPE LDVRLSEEGE QMQNACKELL SEKHAGLQNA QRTVAEVQET ENSTTRP00000015120/1-1506 SQPEPSRTLE LDVRLTEEGE QMLNACKELF SEEHAGLQNA QRTIAEVQET bmy_06211T0/1-1500 SQPEPSRTLE LDLRLTEEGE QMLNACKELF SEKHAGLQNA QRTIAEVQET BACU000770/1-1511 SQPEPSRTLE LDLRLTEEGE QMLNACKELF SEKHAGLQNA QRTIAEVQET 1401 1450 ENSP00000285873/1-1508 LAEMIRQHQK SQLCKSTANG PDKNEPEVEA EQPLCSSQSQ CKEEKNEPLS ENSBTAP00000016037/1-1513 LAEMIRQHQK SQLCKSTANG PDKNEPEQEG -QSLSHPQNQ CKEEKNEPVS ENSTTRP00000015120/1-1506 LAEMIRLHQK SQLCKSTANG PDKNEPEQEA EQSLSSPQNQ CKEEKNEPVS bmy_06211T0/1-1500 LAEMIRQHQK SQLCKSTANG PDKNEPEQEA EQSLSSPQNQ CKEEKNEPVS BACU000770/1-1511 LAEMIRQHQK SQLCKSTANG PDKNEPEQEA EQSLSSPQNQ CKEEKNEPVS 1451 1500 ENSP00000285873/1-1508 LPELTKRLTE ANQRMAKFPE SIKAWPFPDV LECCLVLLLI RSHFPGCLAQ ENSBTAP00000016037/1-1513 LPELTKRLTE ANERIAKLPE SIKTWPFPDV LECCLILLHI GSQCPSFVTQ ENSTTRP00000015120/1-1506 LPELTKRITE ANERIAKFPE SIKTWPFPDV LECCLILLHI GSQYSGFVTQ bmy_06211T0/1-1500 LPELTKRITE ANERIAKFPE SIKTWPFPDV LECCLILLHI GSQYSGFVTQ BACU000770/1-1511 LPELTKRITE ANERIAKFPE SIKTWPFPDV LECCLILLHI GSQYSGFVTQ 1501 1550 ENSP00000285873/1-1508 EMQQQAQELL QKYGNTKTYR RHCQTFCM ENSBTAP00000016037/1-1513 EMQQQAQEFL QKYGNTKVYK RHYQTLCT ENSTTRP00000015120/1-1506 EMQQQAQELL QKYGSTKVYK RHYQTLCT bmy_06211T0/1-1500 EMQQQAQELL EKYGSTEVYK RHYQTLCM BACU000770/1-1511 EMQQQAQELL QKYGSTKVYK RHYQTLCM