KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:04 2014 Check: 00 .. Name: ENSTTRP00000013563/1-704 Len: 734 Check: 8087 Weight: 1.00 Name: ENSP00000221538/1-717 Len: 734 Check: 8858 Weight: 1.00 Name: ENSBTAP00000016038/1-715 Len: 734 Check: 4609 Weight: 1.00 Name: bmy_06572T0/1-708 Len: 734 Check: 9828 Weight: 1.00 Name: BACU002123/1-455 Len: 734 Check: 4685 Weight: 1.00 // 1 50 ENSTTRP00000013563/1-704 MGDLPPDPEP PPQPTSSLRN FQVSERRRSR EHSRPQLTVP EEVQQIPLDA ENSP00000221538/1-717 MGDLPPYPER PAQQPPGRRT SQASQRRHSR DQAQALAADP EERQQIPPDA ENSBTAP00000016038/1-715 MGDPPPDPEP PSQPTSSSRN SQVSERRRSR ERTRP--LVP EELQQIPLDP bmy_06572T0/1-708 MGDLPPDPEP PPQPTSSRRN SQVSERRRSR EHSRPQATVP EEVQQIPLGA BACU002123/1-455 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013563/1-704 ---------- --QQISRGWS QEASVTPNEN F-----FQAE EAXXXXXXXX ENSP00000221538/1-717 ---------- --QRNAPGWS QRGSLSQQEN LLMPQVFQAE EARLGGMEYP ENSBTAP00000016038/1-715 QILRGSQEVL SNQSNLRGWP QRASLTPNEN L----VFQAE D--------P bmy_06572T0/1-708 QILRSSREM- --VSNQINRS QGASLIPNEN F----IFQAE EAQRGGIEYP BACU002123/1-455 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013563/1-704 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000221538/1-717 SVNTGFPSEF QPQPYSDESR MQVAELTTSL MLQRLQQGQS SLFQQLDPTF ENSBTAP00000016038/1-715 YVNPGFSAEV QPQAYLSEGR LQ-ASHNASL MLPQLQQGEG NLFQQLESAY bmy_06572T0/1-708 SLNTGFPSEV QPQTYPSEGR LQ-ASHNASL MLQQLQQGKG NLFQQLESAY BACU002123/1-455 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000013563/1-704 XXXXXXXXXX XXXXXXX--X XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000221538/1-717 QEPPVNPLGQ FNLYQTD--Q FSEGAQHGPY IRDDPALQFL PSELGFPHYS ENSBTAP00000016038/1-715 QGPPADLPGQ FTMYQREDLP FSQGTQHGPY MRDDPTLQFS PSELGFMSFN bmy_06572T0/1-708 QEPRADLLGQ YTRYQREDLQ FSQDTQHGPY LRDDPVLQFS PSELGFMPFN BACU002123/1-455 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000013563/1-704 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000221538/1-717 AQVPEPEPLE LAVQNAKAYL LQTSINCDLS LYEHLVNLLT KILNQRPEDP ENSBTAP00000016038/1-715 MELPEPEPRE LAVQNAKAYL LQTSVNSDLS LYEHLANMLT KILNQRPEDP bmy_06572T0/1-708 MEVPEPDPRE LAVQNAKAYL LQTS------ ---------- -ILNQRPKDP BACU002123/1-455 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000013563/1-704 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000221538/1-717 LSVLESLNRT TQWEWFHPKL DTLRDDPEMQ PTYKMAEKQK ALFTRSGGGT ENSBTAP00000016038/1-715 LFLLESLNRT TQWEWFHPKL DTLRDDPEMQ PTYEMAERQK ALFGRSGSG- bmy_06572T0/1-708 LFLLESLNRT TQWEWFHPKL DTLRDDPEMQ TTYEMAERQK ELFGRSGGG- BACU002123/1-455 ---------- ---------- --------MQ TTYEMAERHK ALFSQSGGG- 301 350 ENSTTRP00000013563/1-704 XXXXXXXXXX AGTAVPNIME KAFYLEQAGV GLSSDESFRI FMALKQLVGQ ENSP00000221538/1-717 EGEQEMEEEV GETPVPNIME TAFYFEQAGV GLSSDESFRI FLAMKQLVEQ ENSBTAP00000016038/1-715 EGEQEMEEET AETAVPNIME KAFYFEQAGV GLSSDESFRV FMALKQLVEQ bmy_06572T0/1-708 EGEQEMEEEV AETAVPNIME KAFYFEQAGV GLSSDESFRI FLALKQLVEQ BACU002123/1-455 EGEQEMEEEV AETAVPNIME KAFYFEQAGV GLSSDESFRI FLALKQLVEQ 351 400 ENSTTRP00000013563/1-704 QPIQTCRFWG KILGLSRNYL VAEVEFREG- ----EEEVEE TMEGGEVMEE ENSP00000221538/1-717 QPIHTCRFWG KILGIKRSYL VAEVEFREGE EEAEEEEVEE MTEGGEVMEA ENSBTAP00000016038/1-715 QPIHTCRFWG KILGLSRSYL VAEVEFREGE EEAEEEEVEE MTEGGEGMEA bmy_06572T0/1-708 RPIHTCRFWG KILGLRRSYL VAEVEFREGE EEVEEEEVEE VMEGGEVMEV BACU002123/1-455 WPIHTCRFWG KILGLRRSYL VAEVEFREGE EEVEEEEVEE VMEGGEVMEA 401 450 ENSTTRP00000013563/1-704 HAEEESDEGD EGEEKAADVI PKPTWKPPPV VPKEESRNGA NKYLYFVCNE ENSP00000221538/1-717 HGE---EEGE EDEEKAVDIV PKSVWKPPPV IPKEESRSGA NKYLYFVCNE ENSBTAP00000016038/1-715 HGE---EEGD EDEDKATDVI PKPTWKPPPV IPKEDSRTGT NRYLYFVCNE bmy_06572T0/1-708 HSEEEGEEGE EDEEKVTDVI PKPTWKPLPV VPKEESRNGA NKYLYFVCNE BACU002123/1-455 HGEEEGEEGE EDEEKVTDVI PKPTWKPPPV VPKEESRNGT NKYLYFVCNE 451 500 ENSTTRP00000013563/1-704 PGQLWVRLPH VTPIQIVQAR KIKKFFTGFL DAPVISYPPF PGNEANYLRA ENSP00000221538/1-717 PGLPWTRLPH VTPAQIVNAR KIKKFFTGYL DTPVVSYPPF PGNEANYLRA ENSBTAP00000016038/1-715 PGRPWMRLPH VTPIQIVQAR KIRKFFTGYL DAPVISYPPF PGNEANYLRA bmy_06572T0/1-708 PGQPWVRLPH VTPIQIVQAR KIKKFFTGFL DAPVISYPPF PGNEANYLRA BACU002123/1-455 PGQPWVRLPH VTPIQIVQAR KIKKFFTGFL DAPVISYPPF PGNEANYLRA 501 550 ENSTTRP00000013563/1-704 QIARISAATQ ISPLGFYQFS EEEGDEEEEG GARRDSYEEN PDFEGIPVLE ENSP00000221538/1-717 QIARISAATQ VSPLGFYQFS EEEGDEEEEG GAGRDSYEEN PDFEGIPVLE ENSBTAP00000016038/1-715 QIARISAATH ISPLGFYQFG EEEGDEEEEG GAGRDSYEEN PDFEGIPVLE bmy_06572T0/1-708 QIARISAATH ISPLGFYQFG EEEGDEEEEG GAGRDSYEEN PDFEGIPVLE BACU002123/1-455 QIARISAATH ISPLGFYQFG EEEGDEEEEG GAGRDSYEEN PDFEGIPVLE 551 600 ENSTTRP00000013563/1-704 LVDSMANWVH HTQHILPQGR CTWVNPLQKT EEEE-LGEEE EKADEGIDEA ENSP00000221538/1-717 LVDSMANWVH HTQHILPQGR CTWVNPLQKT EEEEDLGEEE EKADEGPEEV ENSBTAP00000016038/1-715 LVDSMANWVH HTQHILPQGR CTWVNPLQKT EEEEELGEEE EKADEGVEEV bmy_06572T0/1-708 LVDSMANWVH HTQHILPQGR CTWVNPLQKT EEEEELGEEE EKADEGIEEV BACU002123/1-455 LVDSMANWVH HTQHILPQGR CTWVNPLQKT EEEEELGEEE EKADEGIEEV 601 650 ENSTTRP00000013563/1-704 GQEVGPPLLT PLSEDAEIMH MSPWTARLSC SLSPQYSVAV VRSNLWPGAY ENSP00000221538/1-717 EQEVGPPLLT PLSEDAEIMH LAPWTTRLSC SLCPQYSVAV VRSNLWPGAY ENSBTAP00000016038/1-715 EQEVGPPLLT PLSEDAEIMH MAPWTARLSC TLSPQYSVAV VRSNLWPGAY bmy_06572T0/1-708 EQEVGPPLLT PLSEDAEIMH MSPWTARLSC SLSPQYSVAI VRSNLWPGAY BACU002123/1-455 EQEVGPPLLT PLSEDAEIMH MSPWTARLSC SLSPQYSVAV VRSNLWPGAY 651 700 ENSTTRP00000013563/1-704 AYASGKKFEN IYIGWGHKYS PENFNPSLPA PVQQEYPSGP EIVEMSDPTV ENSP00000221538/1-717 AYASGKKFEN IYIGWGHKYS PESFNPALPA PIQQEYPSGP EIMEMSDPTV ENSBTAP00000016038/1-715 AYASGKKFEN IYIGWGHKYS PENFNPSLPA PIQHEYPSGP DTIEMSDPTV bmy_06572T0/1-708 AYASGKKFEN IYIGWGHKYS PENFNPSLPA PVQQEYPSSP EIMEMSDPTV BACU002123/1-455 AYASGKKFEN IYIGWGHKYS PENFNPSLPA PVQQEYPSSP EIMEMSDPTV 701 750 ENSTTRP00000013563/1-704 EEEQALAAA- ----GGREEE EEEEEEEEDE GQDD ENSP00000221538/1-717 EEEQALKAAQ EQALGATEEE EEGEEEEEGE ETDD ENSBTAP00000016038/1-715 EEEQALKAAQ EQALAAAEEE EEDEEEDEDE DQDD bmy_06572T0/1-708 EEEQALKAAQ EQALAATEEE EEDEEEDEDE DQDD BACU002123/1-455 EEEQALKAAQ EQALAAAEEE EEDEEEDEDE DQDD