KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:04 2014 Check: 00 .. Name: ENSP00000331544/1-703 Len: 745 Check: 8816 Weight: 1.00 Name: BACU013473/1-674 Len: 745 Check: 4225 Weight: 1.00 Name: ENSBTAP00000016040/1-706 Len: 745 Check: 5671 Weight: 1.00 Name: ENSTTRP00000000915/1-724 Len: 745 Check: 5350 Weight: 1.00 Name: bmy_04237T0/1-645 Len: 745 Check: 590 Weight: 1.00 // 1 50 ENSP00000331544/1-703 MERAAPSRRV PLPLLLLGGL ALLAAGVDAD VLLEACCADG HRMATHQKDC BACU013473/1-674 ---------- ---------- ---------- --MEACCADG HRMATQHRDC ENSBTAP00000016040/1-706 MERAAPSRRV PLLLLLLGGL SLLAAPAGAD VSMEACCADG HRMATEHRAC ENSTTRP00000000915/1-724 MERAVPSRRV PLPLLLLGGL SLLAAQAGAD VPMEACCADG HRMATQHRDC bmy_04237T0/1-645 ---------- ---------- ---------- --MEACCADG HRMATQHRDC 51 100 ENSP00000331544/1-703 SLPYATESKE CR-------- ---------- ---------- ---------- BACU013473/1-674 SLPYASESKE CR-------- ---------- ---------- ---------- ENSBTAP00000016040/1-706 SLPYTSESKE CR-------- ---------- ---------- ---------- ENSTTRP00000000915/1-724 SLPYVSESKE CRAVGTLALS QHLNEXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04237T0/1-645 SLPYASESKE CR-------- ---------- ---------- ---------- 101 150 ENSP00000331544/1-703 MVQEQCCHSQ LEELHCATGI SLANEQDRCA TPHGDNASLE ATFVKRCCHC BACU013473/1-674 MVQEQCCHSQ LEELHCATGI NLANEQDSCA VPRGDNASLE AMFVKRCCHC ENSBTAP00000016040/1-706 MVQEQCCQNQ LEELHCATGI NLANEQDSCA TPRGDNTSLE AMFVKRCCHC ENSTTRP00000000915/1-724 MVQEQCCHSQ LEELHCATGI NLANEQDGCT VPHGDNTSLE AMFVKRCCHC bmy_04237T0/1-645 MVQEQCCHSQ LEELHCATGI NLANEQDSCT VPHGDNASLK AMFVKRCCHC 151 200 ENSP00000331544/1-703 CLLGRAAQAQ GQSCEYSLMV GYQCGQVFQA CCVKSQETGD L---DVGGLQ BACU013473/1-674 CLLGRAAQAQ GQSCEYSLMV GYQCGLVFRA CCVKGQETAD FAPGDVGDLQ ENSBTAP00000016040/1-706 CLLGRAAQAQ GQSCEYSLMV GYQCGLVFRA CCVKGQETAD FAPGDGGDLQ ENSTTRP00000000915/1-724 CLLGRAAQAQ GQSCEYSLMV GYQCGLVFRA CCVKGQETAE FAPGDVGDF- bmy_04237T0/1-645 CLLGRAAQAQ GQSCEYSLMV GYQCGLVFRA CCVKGQETAD FAPGD----- 201 250 ENSP00000331544/1-703 ETDKIIEVEE EQEDPYLNDR CRGGGPCKQQ CRDTGDEVVC SCFVGYQLLS BACU013473/1-674 EAAKVSEIEE GQEDPYLNDR CRGGGPCKQQ CRDTGEEVVC SCFVGYQLLP ENSBTAP00000016040/1-706 ETAKVSEIEE EQEDPYLNDR CRGGGPCKQQ CRDTGEEVVC SCFVGYQLLP ENSTTRP00000000915/1-724 EAAKVSEIEE GQEDPYLNDR CRGGGPCKQQ CRDTGEEVVC SCFVGYQLLP bmy_04237T0/1-645 ----VSEIEE GQEDPYLNDR CRGGGPCKQQ CRDTGEEVVC SCFVGYQLLP 251 300 ENSP00000331544/1-703 DGVSCEDVNE CITGSHSCRL GESCINTVGS FRCQRDSSCG TGYELTEDNS BACU013473/1-674 DGVSCEDINE CIMGGQNCRL GESCINTVGS FRCQRDSSCG TGYELTEDND ENSBTAP00000016040/1-706 DGVSCEDVNE CITGGQSCRL GETCVNTAGS FRCQRDSSCG TGYELTEDND ENSTTRP00000000915/1-724 DGVSCEDINE CIMGGQNCRL GESCINTVGS FRCQRDSSCG TGYELTEGND bmy_04237T0/1-645 DGVSCEDINE CIMGGQNCRL GESCINTVGS FRCQRDSSCG TGYELTEDND 301 350 ENSP00000331544/1-703 CKDIDECESG IHNCLPDFIC QNTLGSFRCR PKLQCKSGFI QDALGNCIDI BACU013473/1-674 CKDIDECESG IHNCLPDFIC QNTLGSFRCR PKLQCKSGFI QDALGNCIDI ENSBTAP00000016040/1-706 CKDIDECESG IHNCLPDFIC QNTLGSFRCR PKLQCKSGFI QDALGNCIDI ENSTTRP00000000915/1-724 CKDIDECESG IHNCLPDFIC QNTLGSFRCR PKLQCKSGFI QDALGNCIDI bmy_04237T0/1-645 CKDIDECESG IHNCLPDFIC QNTLGSFRCR PKLQCKSGFI QDALGNCIDI 351 400 ENSP00000331544/1-703 -NECLSISAP CPIGHTCINT EGSYTCQKNV PNCGRGYHLN EEGTRCVDVD BACU013473/1-674 -NECLSISAP CPVGQTCINT EGSYTCQKNV PNCGRGYHLN EEGTRCVDVD ENSBTAP00000016040/1-706 -NECLSISAP CPVGQTCINT EGSYTCQKNV PNCGRGYHLN EEGTRCVDVD ENSTTRP00000000915/1-724 MXXXXXISAP GPVGQTCINT EGSYTCQKNV PNCGRSYHLN EEETRCVDVD bmy_04237T0/1-645 -NECLSISAP CPVGQTCINT EGSYTCQKNV PNCGRGYHLN EEGTRCVDVD 401 450 ENSP00000331544/1-703 ECAPPAEPCG KGHRCVNSPG SFRCECKTGY YFDGISRMCV DVNECQRYPG BACU013473/1-674 ECSPPSEPCG PGHLCVNSPG SFRCECKAGY YFDGISRTCV DINECRRYPG ENSBTAP00000016040/1-706 ECSPPSEPCG PGHLCVNSPG SFRCECKAGY YFDGISRTCV DINECRRYPG ENSTTRP00000000915/1-724 ECLPPSEPCG PGHHCVNSPG SFRCECKAGY YFDGISRTCV DINECRRYPG bmy_04237T0/1-645 ECSPPSEPCG PGHLCVNSPG SFRCECKAGY YFDGISRTCV DINECRRYPG 451 500 ENSP00000331544/1-703 RLCGHKCENT LGSYLCSCSV GFRLSVDGRS CEDINECSSS PCSQECANVY BACU013473/1-674 RLCGHKCENT PGSYYCSCTM GFRLSSDGRS CEDVNECSSN PCSQECANVY ENSBTAP00000016040/1-706 RLCGHKCENT PGSYYCSCTL GFRLSSDGRS CEDVNECNSN PCSQECANVY ENSTTRP00000000915/1-724 RLCGHKCENT PGSYYCSCTM GFRLSSDGRS CEDVNECSSS PCSQECANVY bmy_04237T0/1-645 RLCGHKCENT PGSYYCSCTT GFRLSSDGRS CEDVNECSSS PCSQECANVY 501 550 ENSP00000331544/1-703 GSYQCYCRRG YQLSDVDGVT CEDIDECALP TGGHICSYRC INIPGSFQCS BACU013473/1-674 GSYQCYCRRG YQLSDMDGVT CEDIDECALP TGGHICSYRC LNTPGSFQCS ENSBTAP00000016040/1-706 GSYQCYCRRG YQLSDVDGVT CEDIDECALP TGGHICSYRC INIPGSFQCS ENSTTRP00000000915/1-724 GSYQCYCRRG YQLSDVDGVT CEXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04237T0/1-645 GSYQCYCRRG YQLSDVDGVT CEDIDECALP TGGHICSYRC LNTPGSFQCS 551 600 ENSP00000331544/1-703 CPSSGYRLAP NGRNCQDIDE CVTGIHNCSI NETCFNIQGG FRCLAFECPE BACU013473/1-674 CPSTGYRLAP NGRNCQDIDE CVTGIHNCSI NETCFNIQGG FRCLAFECPE ENSBTAP00000016040/1-706 CPPTGYRLAP NGRNCQDIDE CVTGIHNCSI NETCFNIQGS FRCLAFECPE ENSTTRP00000000915/1-724 XXXXXXXXXX XXXXXXXIDE CVTGIHNCSI NETCXXXXXX XXXXXXXXXX bmy_04237T0/1-645 CPSTGYRLAP NGRNCQDIDE CVTGIHNCSI NETCFNIQGG FRCLAFECPE 601 650 ENSP00000331544/1-703 NYRRSAATLQ QEKTDTVRCI KSCRPNDVTC VFDPVHTISH TVISLPTFRE BACU013473/1-674 NYRRSADTLR QEKTDTVRCI KSCRPNDVTC VLDPVHTISH TVVSLPTFRE ENSBTAP00000016040/1-706 NYRRSTDALR QEKTDTVRCI KSCRPNDVAC VLDPVHTISH TVVSLPTFRE ENSTTRP00000000915/1-724 XXXXXXXX-- -------RCE RLPCHENQEC PKLPLR-ITY YHLSFPT--- bmy_04237T0/1-645 NYRRSADT-- -------RCE RLPCHENQEC PKLPLR-ITY YHLSFPT--- 651 700 ENSP00000331544/1-703 FTRPEEIIFL RAITPPHPAS QANIIFDITE GNLRDSFDII KRYMDGMTVG BACU013473/1-674 FTRPEEIIFL RAITPAYPAN HADIIFDITD GNLRDSFDII KRYMDGMTVG ENSBTAP00000016040/1-706 FTRPEEIIFL RAITPAYPAN HADIIFDITD GNLRDSFDII KRYMDGMTVG ENSTTRP00000000915/1-724 NIQVPAVVFR MGPSSAVPGD SMQL--AITG GNEEGFFTTQ KVSHHS---G bmy_04237T0/1-645 NIQVPAVVFR MGPSSAVPGD SMQL--AITG GNEEGFFTTQ KVSHHS---G 701 750 ENSP00000331544/1-703 VVRQVRPIVG PFHAVLKLEM NYVVGGVVSH RNVVNVHIFV SEYWF BACU013473/1-674 VVRQVRPVVG PFHAVLKLEM NYVVGGVVSH RNVVNVHIFV SEYWF ENSBTAP00000016040/1-706 VVRQVRPIVG PFHAVLKLEM NYVVGGVVSH RNVVSVHIFV SEYWF ENSTTRP00000000915/1-724 VVALTKPVPE PRDLLLTVRM ELSRHGTVSS -FVAKLYIFV SAEL- bmy_04237T0/1-645 VVALTKPVPE PRDLLLTVRM DLSRHGTVSS -FVAKLYIFV SAEL-