KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:10 2014 Check: 00 .. Name: ENSTTRP00000012345/1-448 Len: 545 Check: 7718 Weight: 1.00 Name: ENSP00000312987/1-474 Len: 545 Check: 2966 Weight: 1.00 Name: bmy_08766T0/1-515 Len: 545 Check: 7401 Weight: 1.00 Name: ENSBTAP00000016078/1-455 Len: 545 Check: 6572 Weight: 1.00 Name: BACU015475/1-455 Len: 545 Check: 6586 Weight: 1.00 // 1 50 ENSTTRP00000012345/1-448 ---------- ---------- ---------- ---------- ---------- ENSP00000312987/1-474 ---------- ---------- ---------- ---------- -MRLSKTLVD bmy_08766T0/1-515 RQRGHLGGGG GRAEGGGWGS AQSLRGGHPG QGRWPRCEEG RMRLSKTLVD ENSBTAP00000016078/1-455 ---------- ---------- ---------- ---------- ---------- BACU015475/1-455 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012345/1-448 MDMADYSAAL DPAYTTLEFE NVQVLTMGNV VLPVCLSRFI RTLPYHSTFE ENSP00000312987/1-474 MDMADYSAAL DPAYTTLEFE NVQVLTMGN- ---------- ---------- bmy_08766T0/1-515 MDMADYSAAL DPAYTTLEFE NVQVLTMGN- ---------- ---------- ENSBTAP00000016078/1-455 MDMADYSAAL DPAYTTLEFE NVQVLTMGN- ---------- ---------- BACU015475/1-455 MDMADYSAAL DPAYTTLEFE NVQVLTMGN- ---------- ---------- 101 150 ENSTTRP00000012345/1-448 GGGGSPVQRD TSPSEGTNLN APNSLGVSAL CAICGDRATG KHYGASSCDG ENSP00000312987/1-474 ---------D TSPSEGTNLN APNSLGVSAL CAICGDRATG KHYGASSCDG bmy_08766T0/1-515 ---------D TSPSEGANLN APNSLGVSAL CAICGDRATG KHYGASSCDG ENSBTAP00000016078/1-455 ---------D TSPSEGANLN APNSLGVSAL CAICGDRATG KHYGASSCDG BACU015475/1-455 ---------D TSPSEGANLN APNSLGVSAL CAICGDRATG KHYGASSCDG 151 200 ENSTTRP00000012345/1-448 CKGFFRRSVR KNHMYSCRFS RQCVVDKDKR NQCRYCRLKK CFRAGMKKEA ENSP00000312987/1-474 CKGFFRRSVR KNHMYSCRFS RQCVVDKDKR NQCRYCRLKK CFRAGMKKEA bmy_08766T0/1-515 CKGFFRRSVR KNHMYSCRFS RQCVVDKDKR NQCRYCRLKK CFRAGMKKEA ENSBTAP00000016078/1-455 CKGFFRRSVR KNHMYSCRFS RQCVVDKDKR NQCRYCRLKK CFRAGMKKEA BACU015475/1-455 CKGFFRRSVR KNHMYSCRFS RQCVVDKDKR NQCRYCRLKK CFRAGMKKEA 201 250 ENSTTRP00000012345/1-448 VQNERDRIST RRSSYEDSSL PSINALLQAE VLSQQITSPV SGINGDIRAK ENSP00000312987/1-474 VQNERDRIST RRSSYEDSSL PSINALLQAE VLSRQITSPV SGINGDIRAK bmy_08766T0/1-515 VQNERDRIST RRSSYEDSSL PSINALLQAE VLSQQITSPV SGINGDIRAK ENSBTAP00000016078/1-455 VQNERDRIST RRSSYEDSSL PSINALLQAE VLSQQITSPV SGINGDIRAK BACU015475/1-455 VQNERDRIST RRSSYEDSSL PSINALLQAE VLSQQITSPV SGINGDIRAK 251 300 ENSTTRP00000012345/1-448 KIASIADVCE SMKEQLLVLV EWAKYIPAFC ELPLDDQVAL LRAHAGEHLL ENSP00000312987/1-474 KIASIADVCE SMKEQLLVLV EWAKYIPAFC ELPLDDQVAL LRAHAGEHLL bmy_08766T0/1-515 KIASIADVCE SMKEQLLVLV EWAKYIPAFC ELPLDDQVAL LRAHAGEHLL ENSBTAP00000016078/1-455 KIASIADVCE SMKEQLLVLV EWAKYIPAFC ELPLDDQVAL LRAHAGEHLL BACU015475/1-455 KIASIADVCE SMKEQLLVLV EWAKYIPAFC ELPLDDQVAL LRAHAGEHLL 301 350 ENSTTRP00000012345/1-448 LGATKRSMVF KDVLLLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000312987/1-474 LGATKRSMVF KDVLLLGNDY IVPRHCPELA EMSRVSIRIL DELVLPFQEL bmy_08766T0/1-515 LGATKRSMVF KDVLLLGNDY IVPRHCPELA EMSRVSVRIL DELVLPFQEL ENSBTAP00000016078/1-455 LGATKRSMVF KDVLLLGNDY IVPRHCPELA EMSRVSVRIL DELVLPFQEL BACU015475/1-455 LGATKRSMVF KDVLLLGNDY IVPRHCPELA EMSRVSVRIL DELVLPFQEL 351 400 ENSTTRP00000012345/1-448 XXXXXXXXXX XXXXXXXXXA KGLSDPGKIK RLRSQVQVSL EDYINDRQYD ENSP00000312987/1-474 QIDDNEYAYL KAIIFFDPDA KGLSDPGKIK RLRSQVQVSL EDYINDRQYD bmy_08766T0/1-515 QIDDNEYACL KAIIFFDPDA KGLSDPGKIK RLRSQVQVSL EDYINDRQYD ENSBTAP00000016078/1-455 QIDDNEYACL KAIIFFDPDA KGLSDPGKIK RLRSQVQVSL EDYINDRQYD BACU015475/1-455 QIDDNEYACL KAIIFFDPDA KGLSDPGKIK RLRSQVQVSL EDYINDRQYD 401 450 ENSTTRP00000012345/1-448 SRGRFGELLL LLPTLQSITW QMIEQIQFIK LFGMAKIDNL LQEMLLGGSS ENSP00000312987/1-474 SRGRFGELLL LLPTLQSITW QMIEQIQFIK LFGMAKIDNL LQEMLLGGSP bmy_08766T0/1-515 SRGRFGELLL LLPTLQSITW QMIEQIQFIK LFGMAKIDNL LQEMLLGGSS ENSBTAP00000016078/1-455 SRGRFGELLL LLPTLQSITW QMIEQIQFIK LFGMAKIDNL LQEMLLGGSS BACU015475/1-455 SRGRFGELLL LLPTLQSITW QMIEQIQFIK LFGMAKIDNL LQEMLLGGSS 451 500 ENSTTRP00000012345/1-448 SDAPHAHHPL HPHLMQEHMG TNVIVANTMP AHLSNGQMCE WPRPRGQA-- ENSP00000312987/1-474 SDAPHAHHPL HPHLMQEHMG TNVIVANTMP THLSNGQMCE WPRPRGQAAT bmy_08766T0/1-515 SDAPHAHHPL HPHLMQEHMG TNVIVANTMP AHLSNGQMCE WPRPRGQAAT ENSBTAP00000016078/1-455 SEAPHAHHPL HPHLMPEHMG TNVIVANTMP AHLSNGQMS- ---------T BACU015475/1-455 SDAPHAHHPL HPHLMQEHMG TNVIVANTMP AHLSNGQMS- ---------T 501 550 ENSTTRP00000012345/1-448 ---------- ---------- ---------- ---------- ----- ENSP00000312987/1-474 PETPQPSPPG GSGSEPYKLL PGAVATIVKP LSAIPQPTIT KQEVI bmy_08766T0/1-515 PETPQPSPPG GSGSEPYKLL PGAIATIVKP PSAIPQPTIT KQEVI ENSBTAP00000016078/1-455 PETPQPSPPG GSGSEPYKLL PGAIATIVKP PSAIPQPTIT KQEVI BACU015475/1-455 PETPQPSPPG GSGSEPYKLL PGAIATIVKP PSAIPQPTIT KQEVI