KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:11 2014 Check: 00 .. Name: ENSP00000264779/1-480 Len: 500 Check: 7155 Weight: 1.00 Name: ENSBTAP00000016085/1-473 Len: 500 Check: 8960 Weight: 1.00 Name: bmy_19484T0/1-452 Len: 500 Check: 7642 Weight: 1.00 Name: ENSTTRP00000004086/1-445 Len: 500 Check: 4980 Weight: 1.00 Name: BACU006249/1-493 Len: 500 Check: 869 Weight: 1.00 // 1 50 ENSP00000264779/1-480 MAQHDFAPAW LNFPTPPSST KVLTSSLKSS LNFEKHSENF AWTENRYDVN ENSBTAP00000016085/1-473 MAQHDFAPAW LNFPTPPSST -------KSS LNFEKHSENF SWTENRYDVN bmy_19484T0/1-452 ---------- ---------- --------SS LNFEKHSENF SWTENRYDVN ENSTTRP00000004086/1-445 MAQHDFAPAW LNFPTPPSST KVLPNTLKSS LNFEKHSENF SWTENRYDVN BACU006249/1-493 MAQHDFAPAW LNFPTPPSST -------KSS LNFEKHSENF SWTENRYDVN 51 100 ENSP00000264779/1-480 RRRHNSSDGF DSAIGRPNGG NFGRKEKNGW RTHGRNGTEN INHRGGYHGG ENSBTAP00000016085/1-473 RRRHNSSDGF DSGIGRPNGG NFGRKEKNGW RTHGRNGTEN INHRGGYHGG bmy_19484T0/1-452 RRRHNSSDGF DSGIGRPNGG NFGRKEKNGW RTHGRNGTEN INHRGGYHGG ENSTTRP00000004086/1-445 RRRHNSSDGF DSGIGRPNGG NFGRKEKNGW RTHGRNGTEN INHRGGYHGG BACU006249/1-493 RRRHNSSDGF DSGIGRPNGG NFGRKEKNGW RTHGRNGTEN INHRGGYHGG 101 150 ENSP00000264779/1-480 SSRSRSSIFH AGKSQGLHEN NIPDNETGRK EDKRERKQFE AEDFPSLNPE ENSBTAP00000016085/1-473 SSRSRSSIFH SGKSQGLHEN NIPDNETGRK DDKRERKQFE AEDFPSLNPE bmy_19484T0/1-452 SSRSRSSIFH SGKSQGLHEN SIPDSETGRK EDKRERKQFE AEDFPSLNPE ENSTTRP00000004086/1-445 SSRSRSSIFH SGKSQGLHEN SIPDSETGRK EDKRERKQFE AEDFPSLNPE BACU006249/1-493 SSRSRSSIFH SGKSQGLHEN SIPDSETGRK EDKRERKQFE AEDFPSLNPE 151 200 ENSP00000264779/1-480 YEREPNHNKS LAAGVW---- ---------- ------EYPP NPKSRAPRML ENSBTAP00000016085/1-473 YEREPNQNKS LAAGVW---- ---------- ------EYPP NPKSRTQRML bmy_19484T0/1-452 YEREPNQNKS LAAGVW---- ---------- ------EYPP NPKSRTQRML ENSTTRP00000004086/1-445 YEREPNQNKS LAAGVW---- ---------- ------EYPP NPKSRTQRML BACU006249/1-493 YEREPNQNKS LAAGVWGLHA QTHTYPTKKI SQAPLLEYPP NPKSRTQRML 201 250 ENSP00000264779/1-480 VIKKGNTKDL QLSGFPVVGN LPSQPVKNGT GPSVYKGLVP KPAAPPTKPT ENSBTAP00000016085/1-473 VIKKGNTKDL QLSGFPVVGN LQSQPVKNGT GPSVYKGLVP KPAAPPTKPT bmy_19484T0/1-452 VIKKGNTKDL QLSGFPVVGN LQSQPVKNGT GPSVYKGLVP KPAAPPTKPT ENSTTRP00000004086/1-445 VIKKGNTKDL QLSGFPVVGN LQSQPVKNGT GPSVYKGLVP KPAAPPTKPT BACU006249/1-493 VIKKGNTKDL QLSGFPVVGN LQSQPVKNGT GPSVYKGLVP KPAAPPTKPT 251 300 ENSP00000264779/1-480 QWKSQTKENK VGTSFPHEST FGVGNFNAFK STAKNFSPST NSVKECNRSN ENSBTAP00000016085/1-473 QWKSQTKENK VGTSFPHEST YGVGNFNAFK STAKNFSPST TSVKECNRSN bmy_19484T0/1-452 QWKSQTKENK VGTSFPHESA YGVGNFNAFK STAKNFSPSA TSVKECNRSN ENSTTRP00000004086/1-445 QWKSQTKENK VGTSFPHEST YGVGNFNTFK STAKNFSPST TSVKECNRSN BACU006249/1-493 QWKSQTKENK VGTSFPHEST YGVGNFNTFK STAKNFSPSA TSVKECNRSN 301 350 ENSP00000264779/1-480 SSSPVDKLNQ QPRLTKLTRM RTDKKSEFLK ALKRDRVEEE HEDESRAGSE ENSBTAP00000016085/1-473 SSSPVDKLNQ QPRLTKLTRM RTDKKSEFLK ALKRDRVEEE HEDESHVGSE bmy_19484T0/1-452 SSSPVDKLNQ QPRLTKLTRM RTDKKSEFLK ALKRDRVEEE HEDESHAGSE ENSTTRP00000004086/1-445 SSSPVDKLNQ QPRLTKLTRM RTDKKSEFLK ALKRDRVEEE HEDESHAGSE BACU006249/1-493 SSSPVDKLNQ QPRLTKLTRM RTDKKSEFLK ALKRDRVEEE HEDESHAGSE 351 400 ENSP00000264779/1-480 KDDDSFNLHN SNSTHQERDI NRNFDENEIP QENGNASVIS QQIIRSSTFP ENSBTAP00000016085/1-473 KDDDSFNLHN SNSTHQERDI NRNFDENEIP QENGNASVIS QQIIRSSAFP bmy_19484T0/1-452 KDDDSFNLHN SNSTHQERDI NRNFDENEIP QENGNASVIS QQIIRSSTFP ENSTTRP00000004086/1-445 KDDDSFNLHN SNSTHQERDI NRNFDENEIP QENGNASVIS QQIIRSSTFP BACU006249/1-493 KDDDSFNLHN SNSTHQERDI NRNFDENEIP QENGNASVIS QQIIRSSTFP 401 450 ENSP00000264779/1-480 QTDVLSSSLE AEHRLLKEMG WQEDSENDET CAPLTEDEMR EFQVISEQLQ ENSBTAP00000016085/1-473 QTDVLSSSLE AEHRLLKEMG WQEDSENDET CAPLTEDEMR EFQVISEQLQ bmy_19484T0/1-452 QTDVLSSSLE AEHRLLKEMG WQEDSENDET CAPLTEDEMR EFQVISEQLQ ENSTTRP00000004086/1-445 QTDVLSSSLE AEH------- ---------- ---------- --------LQ BACU006249/1-493 QTDVLSSSLE AEHRLLKEMG WQEDSENDET CAPLTEDEMR EFQVISEQLQ 451 500 ENSP00000264779/1-480 KNGLRKNGIL KNGLICDFKF GPWKNSTFKP TTENDDTETS SSDTSDDDDV ENSBTAP00000016085/1-473 KNGLRKNGIL KNGLICDFKF GPWKNSTFKP TIENDDTETS SSDTSDDDDV bmy_19484T0/1-452 KNGLRKNGIL KNGLICDFKF GPWKNSTFKP TIENDDTETS SSDTSDDDDV ENSTTRP00000004086/1-445 KNGLRKNGIL KNGLICDFKF GPWKNSTFKP TIENDDTETS SSDTSDDDDV BACU006249/1-493 KNGLRKNGIL KNGLICDFKF GPWKNSTFKP TIENDDTETS SSDTSDDDDV