KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:12 2014 Check: 00 .. Name: BACU009813/1-543 Len: 1370 Check: 944 Weight: 1.00 Name: ENSTTRP00000010238/1-809 Len: 1370 Check: 4429 Weight: 1.00 Name: ENSP00000384610/1-1342 Len: 1370 Check: 6066 Weight: 1.00 Name: bmy_13891T0/1-766 Len: 1370 Check: 530 Weight: 1.00 Name: ENSBTAP00000016089/1-1302 Len: 1370 Check: 1964 Weight: 1.00 // 1 50 BACU009813/1-543 ---------- ---------- MLGEIPRPGG ASGARPCGAE LRGEVPVA-- ENSTTRP00000010238/1-809 ---------- ---------- -----MEQEG DAGPELVVVA TEILLALALV ENSP00000384610/1-1342 MEEEKDDSPQ ADFCLGTALH SWGLWFTEEG SPSTMLTGIA VGALLALALV bmy_13891T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016089/1-1302 ---------- ---------- ------MEQH SQSTMLLGIV IGVLLALALI 51 100 BACU009813/1-543 ---------- ---------- ---------- ---------- -VTTLPHALV ENSTTRP00000010238/1-809 GGLSLFVYRS VN-FRQGQPT PQYRFRERDK AMLYGRNSMR KVTTLPHALV ENSP00000384610/1-1342 GVLILFMFRR LRQFRQAQPT PQYRFRKRDK VMFYGRKIMR KVTTLPNTLV bmy_13891T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016089/1-1302 GTTIFFVYRR VSQFRQLQPS PQYRFRKRDK VMFYGRKIMR KVTTLPHTLV 101 150 BACU009813/1-543 GNTAAPRQRV RKRTKVLSLA KRILRFKKEY PTLQPKEPPP SLLEADLTEF ENSTTRP00000010238/1-809 GNTAAPRQQA RKRTKVLSLA KSILRFKQEY PTLQPKEPPP SLLEADLTEF ENSP00000384610/1-1342 ENTALPRQRA RKRTKVLSLA KRILRFKKEY PALQPKEPPP SLLEADLTEF bmy_13891T0/1-766 --------MR RQPAVVLGVA HTVVK----- ---------- ---------- ENSBTAP00000016089/1-1302 GNTAAPRQRV RKRTKVLSLA KRILRFKKEY PTLQPKEPPP SLLEADLTEF 151 200 BACU009813/1-543 DVKNSHLPSE VLYMLKNVRV LGHFEKPLFL ELCKHMVFVQ LLEGEYVFRP ENSTTRP00000010238/1-809 DVKNSHLPSE VLYMLKNVRV PGHFEKPLFL ELCKHMVFV- LLEGEYVFRP ENSP00000384610/1-1342 DVKNSHLPSE VLYMLKNVRV LGHFEKPLFL ELCKHIVFVQ LQEGEHVFQP bmy_13891T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016089/1-1302 DVKNSHLPSE VLYMLKNVRV LGHFEKPLFL ELCKHMVFVQ LLEGEYIFRP 201 250 BACU009813/1-543 GEPDTSIYMV QDGRLEVCIQ DS--DGTEVA VKEVLAGDSV HSLLSVLDVT ENSTTRP00000010238/1-809 GEPDTSIYVV QDGRLEVCIQ DS-------- ---------- ---------- ENSP00000384610/1-1342 REPDPSICVV QDGRLEVCIQ DT--DGTEVV VKEVLAGDSV HSLLSILDII bmy_13891T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016089/1-1302 GELDNSIYVV QDGRLEVRVQ DSAQDGTEVT VKEVLAGDSV HSLLSILDVI 251 300 BACU009813/1-543 TGHTAPYKTV SARAAVPSTV LRLPAVAFQG VFEKYPETLV RVVQTIVVRL ENSTTRP00000010238/1-809 ---------- ---------- ---------- ---------- ---------- ENSP00000384610/1-1342 TGHAAPYKTV SVRAAIPSTI LRLPAAAFHG VFEKYPETLV RVVQIIMVRL bmy_13891T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016089/1-1302 TGHAAPYKTV SARAAVPSTI LRLPATAFQG VFERYPETLV RVVQIIMVRL 301 350 BACU009813/1-543 QGATFLALHN YLGLTTELFN P--------- ---------- ---------- ENSTTRP00000010238/1-809 ---------- ---------- ---------- ---------- ---------- ENSP00000384610/1-1342 QRVTFLALHN YLGLTTELFN AESQAIPLVS VASVAAGKAK KQVFYGEEER bmy_13891T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016089/1-1302 QRVTFLALHN YLGLTTELFN PESQAIPLMS VASVTAGKAK KPTCCNLEEE 351 400 BACU009813/1-543 --------LL PCHASSGGCP ARPCGPPVGT RGGVPCP--- ---------- ENSTTRP00000010238/1-809 ---------- ---------- ---------- ---------- ---------- ENSP00000384610/1-1342 LKKPPRL-QE SCDSDHGGGR PAAAGPLLKR SHSVPAPSIR KQILEELEKP bmy_13891T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016089/1-1302 TSGPPAVPSE RSGTDRGGSR ATVCGPLPKR SHSVLLPSVY EEVAAELSQA 401 450 BACU009813/1-543 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010238/1-809 ---------- ---------- ---------- ---------- ---------- ENSP00000384610/1-1342 GAGDPDPSAP QGGPGSATSD LGMACDRARV FLHSDEHPGS SVASKSRKSV bmy_13891T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016089/1-1302 QAGIQASSAP AGATAGAASD LRVVCDRARV LPHTEEHPGG AVASKPKKSV 451 500 BACU009813/1-543 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010238/1-809 ---------- ---------- ---------- ---------- ---------- ENSP00000384610/1-1342 MVAEIPSTVS QHSESHTDET LASRKSDAIF RAAKKDLLTL MKLEDSSLLD bmy_13891T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016089/1-1302 VVAETPSAVL PNSDGTLDES VTSKKTDSIL RAATQDLLTL MKLDDPSLLD 501 550 BACU009813/1-543 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010238/1-809 ---------- ---------- ---------- ---------- ---------- ENSP00000384610/1-1342 GRVALLHVPA GTVVSRQGDQ DASILFVVSG LLHVYQRKIG SQEDTCLFLT bmy_13891T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016089/1-1302 GRVALLHVPG GTVVLRQGDQ DTSILFVVSG LLHVYQRKID SEEDTFLFMA 551 600 BACU009813/1-543 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010238/1-809 ---------- ---------- ---------- ---------- ---------- ENSP00000384610/1-1342 RPGEMVGQLA VLTGEPLIFT VKANRDCSFL SISKAHFYEI MRKQPTVVLG bmy_13891T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016089/1-1302 RPGEMVGQLA VLTGEPLIFT IRANRDCSFL SISKAHFYDI MRRQPAVVLS 601 650 BACU009813/1-543 ---------- ---RPSLFRG RWVE------ ---------- ---------- ENSTTRP00000010238/1-809 ---------- ---------- ---------- ---------- ---------- ENSP00000384610/1-1342 VAHTVVKRMS SFVRQIDFAL DWVEVEAGRA IYRQGDKSDC TYIMLSGRLR bmy_13891T0/1-766 -------RVS SFVRQIDFTL DWMEVEAGRA IRRETSR--- TYIVLSGCLR ENSBTAP00000016089/1-1302 VAHTVVRRVS SFVRQIDFAL DWMEVEAGRA IYRQGDKSDC TYIVLSGRLR 651 700 BACU009813/1-543 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010238/1-809 ---------- ---------- ---------- ---------- ---------- ENSP00000384610/1-1342 SVIRKDDGKK RLAGEYGRGD LVGVVETLTH QARATTVHAV RDSELAKLPA bmy_13891T0/1-766 AVIQKDDGKK RLAGEYGRGD LVGVVETLTH QARATTVHAI RDSELAKLPG ENSBTAP00000016089/1-1302 AVIQKDDGKK RLAGEYGRGD LVGVVETLTH QARATTVHAI RDSELAKLPE 701 750 BACU009813/1-543 ---------- ------LTAM RWEKLLRPVD SGEP------ ---------- ENSTTRP00000010238/1-809 ---------- ---VVTLIHL LGEKILVILQ QGTATGHQFG LHAVGSKWDS ENSP00000384610/1-1342 GALTSIKRRY PQVVTRLIHL LGEKILGSLQ QGPVTGHQLG LPTEGSKWDL bmy_13891T0/1-766 GALTSIKRRH PQVVTRLIHL LGEKILGSLQ QGTVTGHQFA LHAVGSKWDS ENSBTAP00000016089/1-1302 GALNSIKRQY PQVVTRLIRL LGEKILGSLQ QGAAAGHQFG FHTVGSKWDS 751 800 BACU009813/1-543 GHPLVSVASV AA-------- ---------- -----GRAKR LMCCSLEERL ENSTTRP00000010238/1-809 GNPASNLSTV AVMPVSEDVP LTTFTLELKH ALSAIGPALL LTSGNVKQRL ENSP00000384610/1-1342 GNPAVNLSTV AVMPVSEEVP LTAFALELEH ALSAIGPTLL LTSDNIKRRL bmy_13891T0/1-766 GNPASNLSTV AVMPVSEDVP LTAFTLELKH ALSAIGPALL LTSANVKQRL ENSBTAP00000016089/1-1302 GNAASNLSTV AVMPVSEDVP LTAFTLELKH ALSAIGPALL LTSDSIKQRL 801 850 BACU009813/1-543 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010238/1-809 VSAALDSIHE HRLSSWLGQQ EDIHRIVLYQ VDSTLTPWTQ RCIRQPDFIL ENSP00000384610/1-1342 GSAALDSVHE YRLSSWLGQQ EDTHRIVLYQ VDGTLTPWTQ RCVRQADCIL bmy_13891T0/1-766 GSAALDSIHE YRLSSWLGQQ EDIHRLVLYQ ADSTLTPWTR RCIRQADCIL ENSBTAP00000016089/1-1302 GSAALDSIHE YRLSSWLGQQ EDIHRIVLYQ ADSTLTPWTQ RCIRQADCIL 851 900 BACU009813/1-543 --------ER P--------- ---------- ----PRPQEP CDPAVQQPLG ENSTTRP00000010238/1-809 IVGLGEVSRG ASAGGLERVL ESAAVRAQK- ----RREDGP APARTVQRLS ENSP00000384610/1-1342 IVGLGD--QE PTVGELERML ESTAVRAQKQ LILLHREEGP APARTVEWLN bmy_13891T0/1-766 IVGLGA--QE PTVGEPERML ETSAVRAQKQ VVLLPREDGP APARTVEWLN ENSBTAP00000016089/1-1302 IVGLGE--QE PTVGELERML ETAAVRAQKQ LVLLHRQDGP APARTAEWLN 901 950 BACU009813/1-543 L--------- --------CR RGAPSPL--- ------PSVH EEVVDKLSQA ENSTTRP00000010238/1-809 L-GCCSGHLH PCCPRRV-TR RSLPELVEPS ERVCQRPPDR RSDFSGLARV ENSP00000384610/1-1342 MRSWCSGHLH LCCPRRVFSR RSLPKLVEMY KHVFQRPPDR HSDFSRLARV bmy_13891T0/1-766 MRGWCSGHLH LCCPRRVFSR RGLPKLVELY ERVCQRPADR HSDVSRLARV ENSBTAP00000016089/1-1302 MRGWCSGHLH LCCPRRVFSR RSLPKLVELY ERVCQRPPDR HSDFSRLARV 951 1000 BACU009813/1-543 QAGDQAASAP PGGTAGANSD LRVACD---- GAQVPQHAGE RPG---GSVA ENSTTRP00000010238/1-809 LTSNAVALV- PGGGARGCAQ VGIIRALTEG GIPAHVLGST R--AFTGALC ENSP00000384610/1-1342 LTGNAIALVL GGGGARGCAQ VGVLKALAEC GIPVDMVGGT SIGAFVGALY bmy_13891T0/1-766 LTGNAIALVL GGGGARGCAQ VGIIRALTEC GIPVDMVGGT SIGAFMGALY ENSBTAP00000016089/1-1302 LTGNAIALVL GGGGARGCAQ VGIIRALTEY GIPVDMVGGT SIGAFMGALY 1001 1050 BACU009813/1-543 SEPKK----- ---------- -SLV------ ---------- -GAE------ ENSTTRP00000010238/1-809 SEEWNYSQIR IRAKQWAEDV MSMVKTMLDL TYPIPSVFVF SGAGCSRSIC ENSP00000384610/1-1342 SEERNYSQMR IRAKQWAEGM TSLMKAALDL TYPITS--MF SGAGFNSSIF bmy_13891T0/1-766 SEERNYSQIR IRAKQWAEDV TSMVKTMLDL TYPITS--VF SGAGFNRSIC ENSBTAP00000016089/1-1302 SEERSYSQIR IRAKQWAEDM MSMVKTMLDL TYPITS--MF SGAGFNSSIS 1051 1100 BACU009813/1-543 ---------- ---------- --TPPAVLLH SDGN------ ---------- ENSTTRP00000010238/1-809 SVFKDRQIED LWVPYFTITT DITASAMRVH TDGSLWRYVR ASMSLSGYMP ENSP00000384610/1-1342 SVFKDQQIED LWIPYFAITT DITASAMRVH TDGSLWWYVR ASMSLSGYMP bmy_13891T0/1-766 SVFKDRQIED LWIPYFTVTT DITASAMRVH TDGSLWRYVR ASMSLSGYMP ENSBTAP00000016089/1-1302 SVFKDRQIED LWIPYFAITT DISASAMRVH TDGSLWRYVR ASMSLSGYMP 1101 1150 BACU009813/1-543 ---------- ---------- AAEAVASEKT DAILR----- ---------- ENSTTRP00000010238/1-809 PLCNPKDGHL LIDGGSINNL PADVARSMGA KVVIAIDMGS RDETDLTNYG ENSP00000384610/1-1342 PLCDPKDGHL LMDGGYINNL PADVARSMGA KVVIAIDVGS RDETDLTNYG bmy_13891T0/1-766 PLCDPKDGHL LMDGGYINNL PADVARSMGA EVVIAIDAGS RDETDLTNYG ENSBTAP00000016089/1-1302 PLCDPKDGHL LMDGGYINNL PADVARSMGA KVVIAIDVGS RDETDLTNYG 1151 1200 BACU009813/1-543 ---------- ------AARK DLLTLMKLD- ---------- ---------- ENSTTRP00000010238/1-809 DALSRWWLLW KRWNPLATKV KVLDMVEIQT RLAYVCCVRQ LEMVKSSDYC ENSP00000384610/1-1342 DALSGWWLLW KRWNPLATKV KVLNMAEIQT RLAYVCCVRQ LEVVKSSDYC bmy_13891T0/1-766 DVLSGWWLLW KRWNPLATKV KVLNMAEIQT RLAYVCCVRQ LETVKSSDYC ENSBTAP00000016089/1-1302 DALSGWWLLW KRWNPLATKV KVLNMAEIQT RLAYVCCVRQ LEMVKSSDYC 1201 1250 BACU009813/1-543 ---------- ------EVGG FHEGFIVCTR GTTEHPDWVS LRANAGGFTH ENSTTRP00000010238/1-809 EDLR--PPPP NSYGTLDFSK FDE---ICEV GYQHGRTVFD IWGRSGMLEK ENSP00000384610/1-1342 EYLR--P-PI DSYSTLDFGK FNE---ICEV GYQHGRTVFD IWGRSGVLEK bmy_13891T0/1-766 GYLRAPPTPI DGYGTLEFGK FHE---ICEV GYQHGRTVFD IWGRSGVLEE ENSBTAP00000016089/1-1302 EYLR--P-PI DSYGTLEFSK FDE---ICEV GYQHGRTVFD IWGRSGVLEK 1251 1300 BACU009813/1-543 LRPQRSG--- ---------P DAAASQLA-- ---------- ---------- ENSTTRP00000010238/1-809 MLQDR-GTSK VKACDVLTCP NASFMDLTEI VSRIEPAKVA AA-------- ENSP00000384610/1-1342 MLRDQQGPSK KPASAVLTCP NASFTDLAEI VSRIEPAKPA MV-------- bmy_13891T0/1-766 MLQDRQGTSK VKACNVLTCP NASFTDLAEI ISRIEPAKVA AADGELDPGP ENSBTAP00000016089/1-1302 MLQDRQGTSK MKACDVLTCP NASFTDLAEI VSRIEPAKVA AG-------- 1301 1350 BACU009813/1-543 ------GAAA AFRTER---- LGLVR----- ---------- ---------- ENSTTRP00000010238/1-809 ------DDES DHQTEYKEVL LGSPD----- -------LGS DSEDKPSLWP ENSP00000384610/1-1342 ------DDES DYQTEYEEEL LDVPRDAYAD FQSTSAQQGS DLEDESSLRH bmy_13891T0/1-766 YAHTAEDDES DYQTEYEEVL LGGPK----D FQSAPAGLGS DSEDEPSLRH ENSBTAP00000016089/1-1302 ------DDES DYQTEYEEVL LGGPKDAYVD FQSAPADRGS DSENEPSLRH 1351 1400 BACU009813/1-543 ---------- ---------- ENSTTRP00000010238/1-809 RHSRLASPEP SQDSSDQDG- ENSP00000384610/1-1342 RHPSLAFPKL SEGSSDQDG- bmy_13891T0/1-766 RHSRLASPEP SQDSSSPLAL ENSBTAP00000016089/1-1302 QH-------- ----------