KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:14 2014 Check: 00 .. Name: ENSTTRP00000012318/1-914 Len: 991 Check: 791 Weight: 1.00 Name: ENSP00000321997/1-914 Len: 991 Check: 4308 Weight: 1.00 Name: ENSBTAP00000016102/1-955 Len: 991 Check: 2482 Weight: 1.00 Name: bmy_09267T0/1-493 Len: 991 Check: 1313 Weight: 1.00 Name: BACU004184/1-915 Len: 991 Check: 9249 Weight: 1.00 // 1 50 ENSTTRP00000012318/1-914 ---------- ---------- -----MSNWP TPSELVNTEX XXXXXXXXXX ENSP00000321997/1-914 ---------- ---------- -----MENWP TPSELVNTGF QSVLSQGNKK ENSBTAP00000016102/1-955 LSSPQIIKAG KLKTKKSNKA SDFSDMANWP TPSELVNTEC QSVISQGNKK bmy_09267T0/1-493 ---------- ---------- -----MANWP TPSELVNTEC QSVISLGNKK BACU004184/1-915 ---------- ---------- -----MANWP TPSELVNTEC QSVISLGNKK 51 100 ENSTTRP00000012318/1-914 XXXXXXXXXX XXXXX-XXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXN ENSP00000321997/1-914 PQNRKEKEEK VEKRS-NSDS KENRETKLNG PGENVSEDEA QSSNQRKRAN ENSBTAP00000016102/1-955 PQNRKEREDK VEKRSVNNES KENRETKLDG PGENVSEDEA QLSNQRKRAN bmy_09267T0/1-493 PQNRKEREDK VEKRS-NSES KESRETKLDG PGENVSEDEA QSSNQRKKAN BACU004184/1-915 PQNRKEREDK VEKRS-NSES KESRETKLDG PGENVSEDEA QSSNQRKKAN 101 150 ENSTTRP00000012318/1-914 KHKWVPLHLD DVRPDSQERP GSRNSSRCQP EANK-SHNNR RNDTRS---- ENSP00000321997/1-914 KHKWVPLHLD VVRSESQERP GSRNSSRCQP EANKPTHNNR RNDTRS---- ENSBTAP00000016102/1-955 KHRWVPLHLE DVRPESQERP GSRNSSRCQP EANKSSHNNR RNDTRSKQNF bmy_09267T0/1-493 KHKWVPLHLD DVRPDSQERP GSRNSSRCQP EANKSSHNNR RNDTRS---- BACU004184/1-915 KHKWVPLHLD DVRPDSQERP GSRNSSRCQP EANKSSHNNR RNDTRS---- 151 200 ENSTTRP00000012318/1-914 ---------- ---WRREREK RDDQDEVSSV RSEGGNIQGT FRGRGRGRGR ENSP00000321997/1-914 ---------- ---WKRDREK RDDQDDVSSV RSEGGNIRGS FRGRGRGRGR ENSBTAP00000016102/1-955 SIMPFAVFLS LKGWRREREK RDDQDEVSSV RSEGGNIRGS FRGRGRGRGR bmy_09267T0/1-493 ---------- ---WRREREK KDDQDEVSSV RSEGGNI--- ---------- BACU004184/1-915 ---------- ---WRREREK KDDQDEVSSV RSEGGNIRGT FRGRGRGRGR 201 250 ENSTTRP00000012318/1-914 GRGRGRGNPR LNFDYSYGYQ EHGERTGQPF QTELNTSMMY YYDDGTGVQV ENSP00000321997/1-914 GRGRGRGNPR LNFDYSYGYQ EHGERTDQPF QTELNTSMMY YYDDGTGVQV ENSBTAP00000016102/1-955 GRGRGRGNPR LNFDYSYGYQ EHDESTDQAF QTELNASMMY YYDDGTGVQV bmy_09267T0/1-493 ---------R VNFDYSYGYQ EHGERTGQPF QTELNTSMMY YYDDGTGVQV BACU004184/1-915 GRGRGRGNPR LNFDYSYGYQ EHGERTGQPF QTELNTSMMY YYDDGTGVQV 251 300 ENSTTRP00000012318/1-914 YPVEEALLKE YIKRQIEYYF SIENLERDFF LRRKMDEQGF LPISLIAGFH ENSP00000321997/1-914 YPVEEALLKE YIKRQIEYYF SVENLERDFF LRGKMDEQGF LPISLIAGFQ ENSBTAP00000016102/1-955 YPVEEALLKE YIKRQIEYYF SIENLERDFF LRRKMDEQGF LPISLIAGFH bmy_09267T0/1-493 YPVEEALLKE YIKRQIEYYF SIENLERDFF LRRKMDEQ-- ----VMSSYR BACU004184/1-915 YPVEEALLKE YIKRQIEYYF SIENLERDFF LRRKMDEQGF LPISLIAGFH 301 350 ENSTTRP00000012318/1-914 RVQALTTNLN L-ILE----- --ALKDSTEV EIVDEKMRKK IEPEKWPIPG ENSP00000321997/1-914 RVQALTTNLN L-ILE----- --ALKDSTEV EIVDEKMRKK IEPEKWPIPG ENSBTAP00000016102/1-955 RVQALTTNLN L-ILE----- --ALKDSTEV EIVDEKMRKK IEPEKWPIPG bmy_09267T0/1-493 KYTYLRISKG VSILEFQGRF RSALKDSTEV EIVDEKMRKK IEPEKWPIPG BACU004184/1-915 RVQALTTNLN L-ILE----- --ALKDSTEV EIVDEKMRKK IEPEKWPIPG 351 400 ENSTTRP00000012318/1-914 PPPRSSVPQT DFSQLIDCPE FVPGQAFGSH TESAPNSPRI GSPLSPKKNT ENSP00000321997/1-914 PPPR-SVPPT DFSQLIDCPE FVPGQAFCSH TESAPNSPRI GSPLSPKKNS ENSBTAP00000016102/1-955 PVPR-SVPQT DFSQLIDCPE FVPGQAFGSH TESAPNSPRI GSPLTPKKNA bmy_09267T0/1-493 PPPR-SVPQT DFSQLIDCPE FVPGQAFGSH TESAPNSPRI GSPLSPKKNT BACU004184/1-915 PPPR-SVPQT DFSQLIDCPE FVPGQAFGSH TESAPNSPRI GSPLSPKKNT 401 450 ENSTTRP00000012318/1-914 ETSNLQAVSR GLSASLPDLD SEPWIEVKKR HCPSPVKLK- -------ESP ENSP00000321997/1-914 ETSILQAMSR GLSTSLPDLD SEPWIEVKKR HQPAPVKLR- -------ESV ENSBTAP00000016102/1-955 ETSNLQGMSR GLSTSLPNLD SEPWIEVEKR HHPSPVKLKK PKAASQNEPP bmy_09267T0/1-493 ETSNLQAMSR VLSASLPDLD SEPWIEVKKR HRPSPVKLK- -------ESP BACU004184/1-915 ETSNLQAVSR VLSASLPDLD SEPWIEVKKR HHPSPVKLK- -------ESP 451 500 ENSTTRP00000012318/1-914 PLPEEASNQP YLPDEQEQEE LDFLFDEEME QIEGRKNTFT DWSDNDSDYE ENSP00000321997/1-914 SVPEGSLNQL CSSEEPEQEE LDFLFDEEIE QI-GRKNTFT DWSDNDSDYE ENSBTAP00000016102/1-955 SLPEEASNQL YLPDEQEQEE LDFFFDEEME QIEAQKNTFT DWSDNDSDYE bmy_09267T0/1-493 PLPEEASNQL YLPDEQEQEE LDFLFDEEME QIEGRKNTFT DWSDNDSDYE BACU004184/1-915 PLPKEASNQL YLPDEQEQEE LDFLFDEEME QIEGRKNTFT DWSDNDSDYE 501 550 ENSTTRP00000012318/1-914 IDDQDLNKIL IVTQTPPYMR KHPGGDRTGS HISRAKITSE LAKVINDGLY ENSP00000321997/1-914 IDDQDLNKIL IVTQTPPYVK KHPGGDRTGT HMSRAKITSE LAKVINDGLY ENSBTAP00000016102/1-955 IDDQDLNKIL IVTQTPPYMR KHPGGDRTGY HMSQAKITSE LAKVINDGLY bmy_09267T0/1-493 IDDQDLNKIL IVTQTPPYMR KHPGGDRTGN HMSEAKITSE LAKVINDGLY BACU004184/1-915 IDDQDLNKIL IVTQTPPYMR KHPGGDRTGN HMSEAKITSE LAKVINDGLY 551 600 ENSTTRP00000012318/1-914 YYEQDLWMEE DENKHTAVKQ EVENFKKLNL ISKEQFENLT PELPFEPNQE ENSP00000321997/1-914 YYEQDLWMEE DENKHTAIKQ EVENFKKLNL ISKEQFENLT PELPFEPNQE ENSBTAP00000016102/1-955 YYEQDLWMEE YENKHTAIKQ EVENFKKLNL ISKEQFENLT PELPFEPNQE bmy_09267T0/1-493 YYEQDLWMEE DENKRTAIKV IVS------- ---------- ---------- BACU004184/1-915 YYEQDLWMEE DENKHTAIKQ EVENFKKLNL ISKEQFENLT PELPFEPNQE 601 650 ENSTTRP00000012318/1-914 VPVAPSQSRQ D--VGMLCIP RENLTDELAQ KLFDVSEMSS ATMARSLPTV ENSP00000321997/1-914 VPVAPSQSRQ GGVQGVLHIP KKDLTDELAQ KLFDVSEITS AAMVHSLPTA ENSBTAP00000016102/1-955 VPVAASQSRQ ---------- --DLTDELGQ KLFDVSEVSS ATMARSLPTA bmy_09267T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004184/1-915 VPVAPSQSRQ ---------- --DLTDELAQ KLFDVSEISS ATMARSLPTA 651 700 ENSTTRP00000012318/1-914 VPESPRIYPA RTPKTPRTPR LQDPNKTPRF YPVVKEPKAI DVKXXXXXXX ENSP00000321997/1-914 VPESPRIHPT RTPKTPRTPR LQDPNKTPRF YPVVKEPKAI DVKSPRKRKT ENSBTAP00000016102/1-955 VPESPRIYPA RTPKTPRTPR LQDPNKTPRF YP-VKEPKAI DVKSPRKRKT bmy_09267T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004184/1-915 VPESPRIYPA RTPKTPRTPG LQDPNKTPRF YPVVKEPKAI DVKSPRKRKT 701 750 ENSTTRP00000012318/1-914 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS SNASPSGGAP LVGSYGCTPH ENSP00000321997/1-914 RHSTNPPLEC HVGWVMDSRD RGPGTSSVST SNASPSEGAP LAGSYGCTPH ENSBTAP00000016102/1-955 RHSTNPPLEC HVGWVMDSRD HGPRTSSVSS SNASPSEGAP LIGSYGCTPH bmy_09267T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004184/1-915 RHSTNPPLEC HVGWVMDSRD HGPRASSVSS SNASPSEGAP LV----CTPH 751 800 ENSTTRP00000012318/1-914 SFPKFQHPSH ELLKENGFTQ QVYHKYRRRC LSERKHLGIG QSQEMNTLFR ENSP00000321997/1-914 SFPKFQHPSH ELLKENGFTQ QVYHKYRRRC LSERKRLGIG QSQEMNTLFR ENSBTAP00000016102/1-955 SFPKFQHPSH ELLKENGFTQ QVYHKYRRRC ISERKRLGIG QSQEMNTLFR bmy_09267T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004184/1-915 SFPKFQHPSH ELLKENGFTQ QVYHKYRRRC LSERKHLGIG QSQEMNTLFR 801 850 ENSTTRP00000012318/1-914 FWSFFLRDHF NKTMYEEFRQ LAWEDAKENY RYGLECLFRF YSYGLEKKFR ENSP00000321997/1-914 FWSFFLRDHF NKKMYEEFRQ LAWEDAKENY RYGLECLFRF YSYGLEKKFR ENSBTAP00000016102/1-955 FWSFFLRDHF NKKMYEEFRQ LAWEDAKENY RYGLECLFRF YSYGLEKKFR bmy_09267T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004184/1-915 FWSFFLRDHF NKTMYEEFRQ LAWEDAKENY RYGLECLFRF YSYGLEKKFR 851 900 ENSTTRP00000012318/1-914 QEIFKDFQEE TKKDCESGQL YGLEKFWAYL KYSQSKTQSI DPKLQEYLCS ENSP00000321997/1-914 REIFQDFQEE TKKDYESGQL YGLEKFWAYL KYSQSKTQSI DPKLQEYLCS ENSBTAP00000016102/1-955 HEIFKDFQEE TKKDYESGQL YGLEKFWAYL KYSQSKTQSI DPKLQEYLCS bmy_09267T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004184/1-915 QEIFKDFQEE TKKDYESGQL YGLEKFWAYL KYSQSKTQSI DPKLQEYLCS 901 950 ENSTTRP00000012318/1-914 FKKLEDFRVD PPIGEEFGRK RHSSTSGDAS NRHRLPSNSS TKSPSAAKPT ENSP00000321997/1-914 FKRLEDFRVD PPISDEFGRK RHSSTSGEES NRHRLPPNSS TKPPNAAKPT ENSBTAP00000016102/1-955 FKKLEDFRVD PPIGEEFGRK RHSSTSGEES NRHRLPSNSS TKPPSAAKPT bmy_09267T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004184/1-915 FKKLEDFRVD PPIGEEFERK RHSSTSGEES NRHTLPSNSS TKSPSAAKPT 951 1000 ENSTTRP00000012318/1-914 PDNQLRVPTN SPRRNTSQQS NDNSHQ---- ---------- - ENSP00000321997/1-914 STSELQVPIN SPRRNISPES SDNSH----- ---------- - ENSBTAP00000016102/1-955 PANQLQVPIN SPRRNTSQES SDNSHQN--- ---------- - bmy_09267T0/1-493 ---------- ---------- ---------- ---------- - BACU004184/1-915 PANRLRVPTN SPRRNTSQQS NDNSHQNSAA SVSTHGELPE K