KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:15 2014 Check: 00 .. Name: BACU000037/1-470 Len: 1067 Check: 5165 Weight: 1.00 Name: ENSP00000273352/1-797 Len: 1067 Check: 8973 Weight: 1.00 Name: ENSBTAP00000016106/1-795 Len: 1067 Check: 3462 Weight: 1.00 Name: bmy_06534T0/1-675 Len: 1067 Check: 3910 Weight: 1.00 Name: ENSTTRP00000007764/1-791 Len: 1067 Check: 6829 Weight: 1.00 // 1 50 BACU000037/1-470 MASCRVCNLK VLVAIVCGLL TAIIWGLGIW KSVIRIQR-- ---------- ENSP00000273352/1-797 MASCRAWNLR VLVAVVCGLL TGIILGLGIW RIVIRIQRGK STSSSSTPTE ENSBTAP00000016106/1-795 MASSHACNLR VLVAVVCGLL TAVVLGLGIW RLVIRIQRGT VTSTSSTPIE bmy_06534T0/1-675 -------AKI VAVTTVSQLL DA-------- ---------- ---------- ENSTTRP00000007764/1-791 -MSCHACNLK VLVATVCGLL TAIIWGLGTW KSVIRIQRGT FT-TSSTPIE 51 100 BACU000037/1-470 ---------- ---------- ---------- ---------- ---------- ENSP00000273352/1-797 FCRNGGTWEN GRCICTEEWK GLRCTIANFC ENSTYMGFTF ARIPVGRYGP ENSBTAP00000016106/1-795 FCKNGGTRQN GRCICPEEWK GLRCTIINFC ENSTYGRFTF NRIPVGRYGS bmy_06534T0/1-675 ---------- -----SED-- ---------- --------VF QRAAAG---- ENSTTRP00000007764/1-791 FCKNGGTWEN GRCICPEEWK GRRCTIINFC ENSTYENFTF HRIPVGRYGS 101 150 BACU000037/1-470 ---------- -VDNPVATRL CSLNKYGEIE LQNVTMGNRN ENLETLEKQ- ENSP00000273352/1-797 SLQTCGKDTP NAGNPMAVRL CSLSLYGEIE LQKVTIGNCN ENLETLEKQV ENSBTAP00000016106/1-795 SLQVCDESTL NAGNPLAVRQ CSLNENGEIE LQNVTIGNCN QTLENLENQI bmy_06534T0/1-675 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007764/1-791 SLQTCDKNTL NXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 151 200 BACU000037/1-470 ---------- ---------- ---------- ---------- ---------- ENSP00000273352/1-797 KDVTAPLNNI SSEVQILTSD ANKLTAENIT SATRVVGQIF NTSRNASPEA ENSBTAP00000016106/1-795 VNISTQSQNI SNEAQILTSN ASNLTPENIM SATRVVGQIF NTSRNASSEA bmy_06534T0/1-675 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007764/1-791 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 201 250 BACU000037/1-470 ---------- ---------- ---------- ---------- ---------- ENSP00000273352/1-797 KKVAIVTVSQ LLDASEDAFQ RVA-ATANDD ALTTLIEQME TYSLSLGNQS ENSBTAP00000016106/1-795 KKVAVTTVSQ LLDASEDVFQ RAATAADSDD TFSTLIEQME TYSLSLSDQP bmy_06534T0/1-675 ---------- ---------- -----GDNDD TFAMLIEQTE TYSLSLGNTS ENSTTRP00000007764/1-791 XXXXXXXXXX XXXXXXXXXX XXX-XXXXXX XXXXLIEQIE TYSLSLANTS 251 300 BACU000037/1-470 ---------- ---------- ---------- ---------- ---------- ENSP00000273352/1-797 VVEPNIAIQS ANFSSENAVG PSNVRFSVQK GASSSLVSSS TFIHTNVDGL ENSBTAP00000016106/1-795 VVEPNIAIQS VNVYSGGNEG STGVLFTVLK GTSNSLTPGS TRVNVDVDKL bmy_06534T0/1-675 VVEPNIAIQS VNFSSEGTVG SAGVLFTVL- ---------- ---------- ENSTTRP00000007764/1-791 VVEPNIAIQS VNFSSEGTVG STGVLFTVLK GTRDSLVSGS TVVNASVDKL 301 350 BACU000037/1-470 ---------- ---------- ---------- ---------- ---------- ENSP00000273352/1-797 NPDAQTELQV LLNMTKNYTK TCGFVVYQND KLFQSKTFTA KSDFSQKIIS ENSBTAP00000016106/1-795 NPNEQTELQL LLNTSKTNVK ACGFVVYQNN KLFQSKTFIT KSDFSQKIVS bmy_06534T0/1-675 ---------- -----KANAK TCGFVVYQNN KLFQSKTFXA KSHFSQKIIS ENSTTRP00000007764/1-791 NLNEQAELQI LLNTTKTNDK ACGFVVYQNS KLF-SKTFIA KSHFSQKIIS 351 400 BACU000037/1-470 ---------- ---------- -YNEKELQLH SYACVYWNFS LKDWDTHDCH ENSP00000273352/1-797 SKTDENEQDQ SASVDMVFSP KYNQKEFQLY SYACVYWNLS AKDWDTYGCQ ENSBTAP00000016106/1-795 SKTDENVEDQ SASVEMVFNP RYNRTEFQLH SYACVYWNFS MKDWDTHGCH bmy_06534T0/1-675 SKTDENVEDQ STSVEMVFSP RYNEKELQLH SYACVYWNFS LKDWDTHGCH ENSTTRP00000007764/1-791 SKTDENVEDQ STSVEMFFSP RYNEKEFQLH SYACDYWNFS LKDWDTHGCH 401 450 BACU000037/1-470 KEGVIDGFLR CRCNHTTNFA VLM------- ---------S FKKEYKYPES ENSP00000273352/1-797 KDKGTDGFLR CRCNHTTNFA VLM------- ---------T FKKDYQYPKS ENSBTAP00000016106/1-795 KQKVTDGFLH CHCNHTTNFA VLM------- ---------S FKKEYKYPES bmy_06534T0/1-675 KEGVIDGFLR CRCNHTTNFA VLMIFQNGYF KIMSQLTFQS FKKEYKYPES ENSTTRP00000007764/1-791 KEGVIDGFLR CRCNHTTNFA VLM------- ---------S FKKEYKYPES 451 500 BACU000037/1-470 LDVFSTFGST LSIAGLVLTI IFQVSTR--- ---------- ---------- ENSP00000273352/1-797 LDILSNVGCA LSVTGLALTV IFQIVTRKVR KTSVTWVLVN LCISMLIFNL ENSBTAP00000016106/1-795 LDVFSTFGCA LSIAGLALTI IFQIGTRKVR KTSVTWVLVS LCASMLIFNL bmy_06534T0/1-675 LDVFSTFGCT LSIAGLVLTI IFQVSTS--- ---------- ---------- ENSTTRP00000007764/1-791 LDVFSTFGCA LSIAALALTI IL-VSTRKVR KTSVTWVLVN LCTSMLIFNL 501 550 BACU000037/1-470 ---------- ---------- ---------- ---------- ---------- ENSP00000273352/1-797 LFVFGIENSN KNLQTSDGDI NNIDFDNNDI PRTDTINIPN PMCTAIAALL ENSBTAP00000016106/1-795 FFVFGIENSN KNIKTSNSET NNTDLSSNVM LRQDTVVISN PKCTAIAILL bmy_06534T0/1-675 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007764/1-791 LFVFGIKNSN KNLKTY-SDT DNTDLSNNEM SRQDTVVISN PTCTAIAILL 551 600 BACU000037/1-470 ---------- ---------- ----TMKPLP QHFILFISLI GWGVPAIVVA ENSP00000273352/1-797 HYFLLVTFTW NALSAAQLYY LLIRTMKPLP RHFILFISLI GWGVPAIVVA ENSBTAP00000016106/1-795 HYFGLATFVW MGLSAAQLYF LLIRTMKPLP QHFILFNSLI GWGVPAIVVA bmy_06534T0/1-675 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007764/1-791 HYFVLVTFTW MGLSAAQLYF LLIRTMKPFP QHFILFI-LI G-GVSAIVVA 601 650 BACU000037/1-470 VTVGIIYSQN GNNSQWELDY RREEICWLAT QESSGLITSP LLWSFIILMI ENSP00000273352/1-797 ITVGVIYSQN GNNPQWELDY RQEKICWLAI PEPNGVIKSP LLWSFIVPVT ENSBTAP00000016106/1-795 LTVGIICSQN GNNSQWELDY RQEEICWLAT QGSSGLIASP LLWSFIVPVT bmy_06534T0/1-675 ---------- ---------- -----CWLAT QEXSGLITSP LLWSFITPVT ENSTTRP00000007764/1-791 VTVGIIYSQN GNNSQWELDY RREEICWLAT QESSGLITSP LLWSFIIPVT 651 700 BACU000037/1-470 IILISNVVIF IVIVVKVLWK NNQNLKRISW SGEWTVIPRM GCWQQNVGAF ENSP00000273352/1-797 IILISNVVMF ITISIKVLWK NNQNLTS--- TKKVSSMKKI VSTLSVAVVF ENSBTAP00000016106/1-795 LIIISNIVMF IIIVVKVLWK NNQNLTS--- TKKVSSLKKI LSTLSVAVVF bmy_06534T0/1-675 IILISNVVIF IVIVVKVLWK NNQNLKS--- TKKVSILKKF LSTLSVAVVF ENSTTRP00000007764/1-791 IILISNVVIF IVIVVKVLWK NNQNLKS--- TKKFSILKKF LSTLSVAVVF 701 750 BACU000037/1-470 PLYLLTKYNC LMGKQLLAGL SISSLPLNKP VRSLSEQGLN GVESKTANY- ENSP00000273352/1-797 GITWILAYLM LVNDDSIRIV FSYIFCLFNT TQG------- ---------- ENSBTAP00000016106/1-795 GITWILAYLM LTDNDDIRLI FSYIFCVFNT TQG------- ---------- bmy_06534T0/1-675 GVTWILAYLM LIDNDGIRVT FSYLFCLFNT TQNILESTMN GQLDLSGKLI ENSTTRP00000007764/1-791 GVTWILAYLM LMDDDGIRVT FSYLFCLFNT TQG------- ---------- 751 800 BACU000037/1-470 -APPTGERQE ILAFRKTGSA LSRLAHACIH PARISY---- ---------- ENSP00000273352/1-797 ---------- ---------- ---LQIFILY TVRTKV---- ---------- ENSBTAP00000016106/1-795 ---------- ---------- ---LQIFILY TVRTKI---- ---------- bmy_06534T0/1-675 IKAQLGEDIR RIPIHNEDIT YDELVLMMQR VFRGKLLSND EVTIKYKDED ENSTTRP00000007764/1-791 ---------- ---------- ---LQIFILH TVRTKI---- ---------- 801 850 BACU000037/1-470 ---------- -PRSSSEKAE IQAPAGCGVV SPPPLAAAHA SWVDLLVVRR ENSP00000273352/1-797 ---------- ---FQSEASK VLMLLSSI-G RRKSLPSVTR ---PRLRVKM ENSBTAP00000016106/1-795 ---------- ---FQSKASE VLKSLSSTAG RVKVLPSK-- ---PRLHVRM bmy_06534T0/1-675 GDLITIFDSS DLSFAIQCSR ILKLTLFVNG QPRPLESSQV KYLRRELIEL ENSTTRP00000007764/1-791 ---------- ---FQSKASE VLKSLSLTAG RVKVLPSVTP ---LRLYVRM 851 900 BACU000037/1-470 SERTDFLLVP APLLSSPATY WARALARLGG SVRLAGARAS LPARCSGPGG ENSP00000273352/1-797 YNFLR----- -SLPTLHERF RLLETSPSTE EITLSESDNA KESI------ ENSBTAP00000016106/1-795 YNMIR----- -SFPALNERF RLLEPSTLSE EM--SESDQV NPST------ bmy_06534T0/1-675 RNKVN----- -RLLDSLEPP GEPGPSTNIP ENDTVDSREE KPAASDSSGK ENSTTRP00000007764/1-791 YNMLR----- -SLLALNEHF WLLEPSILTK EMASSESDQE NPSI------ 901 950 BACU000037/1-470 QPSGP----- ---------- ---------- ---------- ---------- ENSP00000273352/1-797 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016106/1-795 ---------- ---------- ---------- ---------- ---------- bmy_06534T0/1-675 QSTQVMAASQ MYQQYPQQAG YGTQPQAPPQ PTQQYGIQYA AGYSQQTGPQ ENSTTRP00000007764/1-791 ---------- ---------- ---------- ---------- ---------- 951 1000 BACU000037/1-470 ---------- ---------- ---------- ---------- ---------- ENSP00000273352/1-797 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016106/1-795 ---------- ---------- ---------- ---------- ---------- bmy_06534T0/1-675 QPQQFQGYGQ QPASQAPAPA FSGQPQQLPA QPPQQYQASS YPPQTYTTQT ENSTTRP00000007764/1-791 ---------- ---------- ---------- ---------- ---------- 1001 1050 BACU000037/1-470 ---------- ---------- ---------- ---------- ---------- ENSP00000273352/1-797 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016106/1-795 ---------- ---------- ---------- ---------- ---------- bmy_06534T0/1-675 SQPTNYTVAP ASQHGMAPSQ PGAYQPRPGF TPPPGSTMTP LPSGSNPYAR ENSTTRP00000007764/1-791 ---------- ---------- ---------- ---------- ---------- 1051 1100 BACU000037/1-470 ---------- ------- ENSP00000273352/1-797 ---------- ------- ENSBTAP00000016106/1-795 ---------- ------- bmy_06534T0/1-675 SRPPFGQGYT QPGPGYR ENSTTRP00000007764/1-791 ---------- -------