KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:18 2014 Check: 00 .. Name: ENSP00000466248/1-336 Len: 621 Check: 7218 Weight: 1.00 Name: ENSBTAP00000016120/1-600 Len: 621 Check: 3443 Weight: 1.00 Name: ENSTTRP00000007684/1-335 Len: 621 Check: 2303 Weight: 1.00 Name: bmy_06678T0/1-522 Len: 621 Check: 39 Weight: 1.00 Name: BACU006511/1-564 Len: 621 Check: 2535 Weight: 1.00 // 1 50 ENSP00000466248/1-336 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016120/1-600 MDPRPRRRRR SCCPLVSVFL RDPSSGRVYR RGKLIGKGAF SRCYKLTDMS ENSTTRP00000007684/1-335 ---------- ---------- ---------- ---------- ---------- bmy_06678T0/1-522 MEPEPRRRRH SCRPLVSVFL RDPSSGRVYR RGKLIGKGAF SRCYKLTDMS BACU006511/1-564 ---------- ---------- ---------- ---------- --------MS 51 100 ENSP00000466248/1-336 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016120/1-600 TSAVFALKVV PRGGGGAARL HARCKVEREI ALHSRLRHRN IVAFHAHFAD ENSTTRP00000007684/1-335 ---------- ---------- ---------- ---------- ---------- bmy_06678T0/1-522 TSSVFALKVV PHGGGGAGRL CPSDKVEREI ALHSRLRHRN IVAFHGHFAD BACU006511/1-564 TSSVFALKVV PHGGGGAGRL CPSDKVESEI ALHSCLRHRN IVAFHGHFAD 101 150 ENSP00000466248/1-336 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016120/1-600 RDHVYMVLEY CSRQSLAHVL QARQTLTEPE VRYYLRGLVS GLSYLHQRRI ENSTTRP00000007684/1-335 ---------- ---------- ---------- ---------- ---------- bmy_06678T0/1-522 RDHVYMVLEY CSRQSLAHVL EARQTLTEPE VRYYLRGLVS GLRYLHQRRI BACU006511/1-564 RDHVYMVLEY CSRQSLAHVL EARQTLTEPE VRYYLRGLVS GLRYLHQRRI 151 200 ENSP00000466248/1-336 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016120/1-600 VHRDLKLSNF FLNKNMEVKI GDLGLATKIG PGGRCHRVLC GTPNFLAPEV ENSTTRP00000007684/1-335 ---------- ---------- ---------- ---------- ---------- bmy_06678T0/1-522 VHRDLKLSNF FLNKNMEVKI GDLGLATRVG PGGRCHRVLC GTPNFLAPEV BACU006511/1-564 VHRDLKLSNF FLNKNMEVKI GDLGLATRVG PGGRCHRVLC GTPNFLAPEV 201 250 ENSP00000466248/1-336 ---------- --------MY TVLTGTPPFM ASPLSEMYQN IREGHYPEPA ENSBTAP00000016120/1-600 VSRNGHSCQS DIWALGCIMY MVLTGVPPFV AAPLSEMYQN IRDGRYPEPA ENSTTRP00000007684/1-335 ---------- ---------Y MVLTGAPPFV AAPLSEMYQN IRDGRYPEPA bmy_06678T0/1-522 VSRNGHSCQS DIWALGCVMY MVLTGAPPFV AAPLSEMYQN IRDGRYPEPA BACU006511/1-564 VSRNGHSCQS DIWALGCVMY MVLTGAPPFV AAPLSEMYQN IRDGRYPEPA 251 300 ENSP00000466248/1-336 HLSANARRLI VHLLAPNPAE RPSLDHLLQD DFFTQGFTPD RLPAHSCHSP ENSBTAP00000016120/1-600 HLSANARRLI ARLLAPNPAE RPSLDHLLQD DFFTQGFTPD RLPPHCCHSP ENSTTRP00000007684/1-335 HLSPNARRLI ARLLAPNPAE RPSLDHLLQD DFFTQGFTPD RLPPHSCHSL bmy_06678T0/1-522 HLSPNARRLI ARLLAPNPAE RPSLDHLLQD DFFTQ----- ---------- BACU006511/1-564 HLSPNARRLI SHLLAPNPAE RPSLDHLLQD DFFTQGFTPD RLPPHSCHSL 301 350 ENSP00000466248/1-336 PIFAIPPPLG RIFRKVGQRL LTQCRPPCPF TPKEASGPGE GGPDPDSMEW ENSBTAP00000016120/1-600 PIFAIPQPLG RLFRKVGRLL LPQCRAPCPL ASQEASGPGE DGSDPDSMEW ENSTTRP00000007684/1-335 PIFSIPQPLG RLFWRVGRLL LPQCRRPCPF TPKEASGPGE DGPDPDSMEC bmy_06678T0/1-522 -------PLG RLFRKVGWLL LPQRRRPCPF TPKEASGPGE DGPDPDSTEW BACU006511/1-564 PIFSIPQPLG RLFWKVGRLL LPQRRRPCPF TPKEASGPGE DGPDPDSTEW 351 400 ENSP00000466248/1-336 DGESSLSAKE VPCLEGPIHL VAQGTLQSDL AGPEGSRRPE VEAALRHLQL ENSBTAP00000016120/1-600 GSE----RVG LCAPEVPIQL LAQGTLQSAP AGPEGSPRQG VEAAIRNLQL ENSTTRP00000007684/1-335 GSEASLSEGG APCPERPVHL LSQGTLGSDP AGPQGSPRQE VEAAIRSLQL bmy_06678T0/1-522 GSE------- ---------- ---------- ---------- ---------- BACU006511/1-564 GSEASLSEGG VPCPRRPVRL LSQGTLGSDT AGPQGSPRQE VEAAIRSLQL 401 450 ENSP00000466248/1-336 CLDVGP---- -------PAT QDPLGEQQPI LWAPKWVDYS SKYGFGYQLL ENSBTAP00000016120/1-600 YLDSGP---- -------PAM QDPPGEQQPV FWAPKWVDYY SKYGFGYQLS ENSTTRP00000007684/1-335 CLDSGA---- -------PAT QDPPGEQRPI LWAPKWVDYS SKYGFGYQLS bmy_06678T0/1-522 ---------- ---------- -DPPGEQRPI LWAPKWVDYS SKYGFGYQLS BACU006511/1-564 CLDSGAPGPL LTSFHPVPAM QDPPGEQRPI LWAPKWVDYS SKYGFGYQLS 451 500 ENSP00000466248/1-336 DGG-----RT GRH----PHG ---------- ---------- ---------- ENSBTAP00000016120/1-600 DGRNRVLVRD STHMALHPPG GKVSYAPHLE KLQMFTLRNE PRLLGA---- ENSTTRP00000007684/1-335 DGG-----SA GWH----PHG ---------- ---------- ---------- bmy_06678T0/1-522 DGVSGVLLRD GTHMALRPAG GQVIYMPDRG KLETFALRDV PSLLGAKLAV BACU006511/1-564 DGGSGVLLRD GTHMALRPAG GQVIYMPERG KLETFALRDV PSLLGAKLAV 501 550 ENSP00000466248/1-336 --------PA TPRREGTLPT PVPPAG---- -----PGLCL LRFLASEHAL ENSBTAP00000016120/1-600 LLFPRAAVLP GVQAGGAAAL QRWDGAGDQG APSNGPDQSA LTWAGSQRAG ENSTTRP00000007684/1-335 --------PA SRRGEGGLST AAWPAA---- -----PSLCL LRFLVSERAA bmy_06678T0/1-522 LRLFARYMQQ RLREEGGLST ATWPAA---- -----PSLCL LRFLVSERAA BACU006511/1-564 LRLFARYMQR RLREEGGLST ATWPAA---- -----PSLCL LRFLVSERAA 551 600 ENSP00000466248/1-336 LLLFSNGMVQ VSFSGVPAQL VLSGEGEGLQ LTLWEQGSPG TSYSLDVPRS ENSBTAP00000016120/1-600 LA--SNGHAQ RSSSGDQEQL VLSRGGEELL LTVWELGQPG TSYPLGILWG ENSTTRP00000007684/1-335 LLLFSDGTVQ VSCSGDQAQL VLSGGCEELR LTVWEQGQPG TSYPLGVLRS bmy_06678T0/1-522 LLLFSDGTVQ VSCSGGQAQL VLSGGCEELR LTVWEQGQPG TSYPLGVLRS BACU006511/1-564 LLLFSDGTVQ VSCSGGQAQL VLSGGCEELR LTVWEQGQPG TSYPLGVLRS 601 650 ENSP00000466248/1-336 HGCAPTTGQH LHHALRMLQS I ENSBTAP00000016120/1-600 HGCAPGTHQH LQHAILMLQS I ENSTTRP00000007684/1-335 HGCAPAARQH LQHAIHMLQS I bmy_06678T0/1-522 HGCAPAARQH LQRAIHMLQS I BACU006511/1-564 HGCAPAARQH LQHAIHMLQN I