KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:20 2014 Check: 00 .. Name: ENSP00000373566/1-1113 Len: 1153 Check: 2269 Weight: 1.00 Name: ENSTTRP00000013660/1-1102 Len: 1153 Check: 6302 Weight: 1.00 Name: ENSBTAP00000016131/1-1113 Len: 1153 Check: 3075 Weight: 1.00 Name: bmy_22465T0/1-846 Len: 1153 Check: 5527 Weight: 1.00 Name: BACU000804/1-1076 Len: 1153 Check: 6963 Weight: 1.00 // 1 50 ENSP00000373566/1-1113 MESKAWESNN EDLLSSSGVT SNGGSSSSFF VSSIRGTIIE NTSSAGTLTQ ENSTTRP00000013660/1-1102 MEQNPCDSNN EDLLSSSGIT SNAGSSGSFF MSSIRGTIIE NTSSTGTLTQ ENSBTAP00000016131/1-1113 MEQKPCEPKN EHLLPSSGIP SNAGSSSPFF MSSIRGTIIE NTSSTGTITQ bmy_22465T0/1-846 MEQKPCESNN EDLLSSSGIT SNAGSSGSFF MSSIRGTIIE NTSSTGTLTQ BACU000804/1-1076 MEQKPCESNN EDLLSSSGIT SNAGSSGSFF MSSIRGTIIE NTSSTGTLTQ 51 100 ENSP00000373566/1-1113 VPFFPKYEVE LDSPRKIIPS PGKEHFERVL EEYSHQVKDL QRRLNESNEL ENSTTRP00000013660/1-1102 IPFFPKYEVE LDSHKKVIPY PGKEHIERVL EEYSHQVKDL QRRLNESNEL ENSBTAP00000016131/1-1113 IPFFPKYEVE LDSHRKVIPY PGKEHIERVL EEYSHQVKDL QRRLNESNEL bmy_22465T0/1-846 IPFFPKYEVE RDSHRKVIPY PGKEHIERVL EEYSHQVKDL QRRLNESNEL BACU000804/1-1076 IPFFPKYEVE LDSHRKVIPY PGKEHIERVL EEYSHQVKDL QRRLNESNEL 101 150 ENSP00000373566/1-1113 HEKQKFYLRQ SVIDLQTKLQ EMQMERDAMA DIRRRESQSQ EDLRNQLQNT ENSTTRP00000013660/1-1102 HEKQTFYLRQ SVIGLQTKLK EMQMERDAMA DIRRRESQSQ EDLRNQLQNT ENSBTAP00000016131/1-1113 HEKQKFYLRQ SVIDLQTKLQ EMQMERDAMA DIRRRESQSQ EDLRNQLQNT bmy_22465T0/1-846 HEKQKFYLRQ SVIDLQTKLQ EMQMERDAMA DIRRRESQSQ EDLRNQLQNT BACU000804/1-1076 HEKQTFYLRQ SVIDLQTKLQ EMQMERDAMA DIRRRESQSQ EDLRNQLQST 151 200 ENSP00000373566/1-1113 VHELEAAKCL KEDMLKDSNT QIEQLRKMML SHEGVLQEIR SILVDFEEAS ENSTTRP00000013660/1-1102 IHELEAAKCL KDDMLKDSNT QIEQLRKTML GHERVLQEIR SVLVDFEEAS ENSBTAP00000016131/1-1113 VHELEAAKCL KDDMLKDSST QIEQLRKMVL SHEGVLQEIR SVLVDFEEAS bmy_22465T0/1-846 VHELEAAKCL KDDMLKDSNT QIEQLRKMML SHEGVLQEIR SVLVDFEEAS BACU000804/1-1076 VHELEAAKCL KDDMLKESNT QIEQLRKMML SHEGVLQEIR SVLVDFEEAS 201 250 ENSP00000373566/1-1113 GKKICEHDSM STLHFRSLGS AISKILRELD TEISYLKGRI FPVEDQLEAL ENSTTRP00000013660/1-1102 GKKIYDHDSM STIHFRSMGS AISKILRELD TEISYLKGRI FPVEDQLETL ENSBTAP00000016131/1-1113 GKKVFEHDSM STIHSRNMAS AISKVLRELD TEISYLKGRI FPVEDQLEAL bmy_22465T0/1-846 GKKMYEHDSM STIHFRSMGS AISKILRELD TEISYLKGRI FP-------- BACU000804/1-1076 GKKIYEHDSM STIHFRSMGS AISKILRDLD TEISYLKGRI FPVEDQLETL 251 300 ENSP00000373566/1-1113 KSESQNKIEL LLQQHQDRIE QLISEHEVEI TGLTEKASSA RSQANSIQSQ ENSTTRP00000013660/1-1102 KSESQNKIEL LLQQHQNRIE QLISEYEIEK AGLTEKASSA RSQASSIQSQ ENSBTAP00000016131/1-1113 KSESQNKMEL LLQQHQDRIE QLISEHEAEI TGLTEKASSA RSQANSIQSQ bmy_22465T0/1-846 ---------- ---------- -LISEHEIEI AGLTEKASSA RSQANSIQSQ BACU000804/1-1076 KSESQNKIEL LLQQHQDRIE QLISEHEIEI AGLTEKASSA RSQANSIQSQ 301 350 ENSP00000373566/1-1113 MEIIQEQARN QNSMYMRQLS DLESTVSQLR SELREAKRMY EDKTEELEKQ ENSTTRP00000013660/1-1102 LEIIQEQARN QNSMYMRQLS DLESTVSQLR SELREAKRIY EDKIEELEKQ ENSBTAP00000016131/1-1113 LEIIQEQARN QNSMYMRQLS DLESTVSQLR SELREAKRMY EDKIEELEKQ bmy_22465T0/1-846 LEIIQEQARN QNSMYMRQLS DLESTVSQLR SELREAKRMY EDK-----EN BACU000804/1-1076 LEIIQEQARN QNSMYMRQLS DLESTVSQLR SELREAKRMY EDK------- 351 400 ENSP00000373566/1-1113 LVLANSELTE ARTERDQFSQ ESGNLDDQLQ KLLADLHKRE KELSLEKEQN ENSTTRP00000013660/1-1102 LVLANSELME ARTERDQFSE ESGNLDDKLQ KLLADLHKRE KELSLEKEQN ENSBTAP00000016131/1-1113 LVLANSELTE ARTERDQFSQ ESGNLDDQLQ KLLADLHKRE KELSLEKEQN bmy_22465T0/1-846 LQNSPLRIWT SRSCHYWLYR RAGEA----- ---TDLHKRE KELSLEKEQN BACU000804/1-1076 ---------- ---------- ---------- ---ADLHKRE KELSLEKEQN 401 450 ENSP00000373566/1-1113 KRLWDRDTGN SITIDHLRRE LDNRNMEVQR LEALLKALKS ECQGQMERQM ENSTTRP00000013660/1-1102 KRLWDRDTGN SITIDHLRQE LDNRNMEVQR LEALLKAMKS ECQDQMERQM ENSBTAP00000016131/1-1113 KRLWDRDTGN SITIDHLRRE LDDRNMEVQR LEALLKAMKS ECQGQMERQM bmy_22465T0/1-846 RRLWDRDTGN SITIDHLRRE LDDRNMEVQR LEALLKAMKS ECQGQMERQM BACU000804/1-1076 RRLWDRDTGN SITIDHLRRE LDDRNMGVQR LEALLKAVKS ECQGQMERQM 451 500 ENSP00000373566/1-1113 AAIQGKNESL EKVSSLTAQL ESTKEMLRKV VEELTAKKMT LESSERTISD ENSTTRP00000013660/1-1102 AAIQGKNESL EKVSSLTAQL ESTKEMLRKV VEELTAKKLS LESSERTVLD ENSBTAP00000016131/1-1113 AAIQGKNESL EKVSSLTAQL ESTKEMLRKV VEELTAKKMT LESSERTVSD bmy_22465T0/1-846 AAIQGKNESL EKVSSLTAQL ESTKEMLRKV VEELTAKKLT LESSERTVSD BACU000804/1-1076 AAIQGKNESL EKVSSLTAQL ESTKEMLRKV VEELTAKKLT LESSERTVSD 501 550 ENSP00000373566/1-1113 LTTSLQEKER AIEATNAEIT KLRSRVDLKL QELQHLKNEG DHLRNVQTEC ENSTTRP00000013660/1-1102 LTASFQEKER AIEATNSEIM RLRSRVDLKL QELQHLKNEG AHLRNVQTEC ENSBTAP00000016131/1-1113 LTASLQEKER AIEATNAEIT KLRSRVDLKL QELQHLKNEG DHLRNVQTEC bmy_22465T0/1-846 LTASLQEKER AIEATNSEIM KLRSRVDLKL QELQHLKNEG GHLRNVQTEC BACU000804/1-1076 LTASLQEKER AIEATNSEIV KLRSRVDLKL QELQHLKNEG GHLRNVQTEC 551 600 ENSP00000373566/1-1113 EALKLQMTEK DKVIEILRQQ IENMTQLVGQ HGRTAGAMQV EKAQLEKEIN ENSTTRP00000013660/1-1102 EALKLQMAEK DKVVEILRQQ IEKMTQLVGQ HGRTAGAMQV EKAQLEKEIN ENSBTAP00000016131/1-1113 EALRLQMAEK DKVIEILRQQ IENMTQLVGQ HGRTAGAMQV EKAQLEKEIN bmy_22465T0/1-846 EALKLQMAEK DKVIEILRQQ IENMTQLVGQ HGRTAGAMQV EKAQLEKEIN BACU000804/1-1076 EALKLQMAEK DKVIEILRQQ IENMTQLVGQ HGRTAGAMQV EKAQLEKEVN 601 650 ENSP00000373566/1-1113 DRRMELKELK ILKDKKDAKI RELEARVSDL ELEKVKLVNA GSERLRAVKD ENSTTRP00000013660/1-1102 DRRLELQEVK ILKDKKDAKI RELEARVSDL ELENVKLVNA GSERLRAVKD ENSBTAP00000016131/1-1113 DRRLELQEVK ILKDKRDAKI RELEARVSDL ELEKVKLVNA GSERLRAVKD bmy_22465T0/1-846 DRRLELQEVK VLKDKKDAKI RELEARVSDL ELEKVKLVNA GSERLRAVKD BACU000804/1-1076 DRRLELQEVK VLKDKKDAKI RELEARVSDL ELEKVKLVNA GSERLRAVKD 651 700 ENSP00000373566/1-1113 IKQERDQLLN EVKTSRSELN NLSEEYEVLK RNFRNKSEEM EMTTNKLKMQ ENSTTRP00000013660/1-1102 ITQERDRLLS EVKASRNELN SLTEDYEVLK RNFRNKSEEM ETTTNKLKMQ ENSBTAP00000016131/1-1113 IKQERDHLLS EVKASRNELN SLTEDYEVLK RNFRNKSEEM ETTTNKLKMQ bmy_22465T0/1-846 IKQERDHLLS EVKASRNELN SLTEDYEVLK RNFRNKSEEM ETTTNKLKMQ BACU000804/1-1076 IKQERDHLLS EVKASRNELN SLTEDYEVLK RNFRNKSEEM ETTTNKLNMQ 701 750 ENSP00000373566/1-1113 LKSAQSELEQ TRNTLKSMEG SDGHAMKVAM GMQKQITAKR GQIDALQSKI ENSTTRP00000013660/1-1102 LKSAQSELEQ TRNTLKSMEG SDGHAMKVAM GMQKQITAKR GQIDALQSKI ENSBTAP00000016131/1-1113 LKSAQSELEQ TRNTLKSMEG SDGHAMKVAM GMQKQITAKR GQIDALQSKI bmy_22465T0/1-846 LKSAQSELEQ TRNTLKSMEG SDGHAMKVAM GMQKQITAKR GQIDALQSKI BACU000804/1-1076 LKSAQSELEQ TRNTLKSMEG SDGHAMKVAM GMQKQITAKR GQIDALQSKI 751 800 ENSP00000373566/1-1113 QFLEEAMTNA NKEKHFLKEE KSKLSQELST VATEKNKMAG ELEVLRSQER ENSTTRP00000013660/1-1102 QFLEEAMANA NKEKHLLKEE KTKLSQELST VAAEKNKMAG ELEVLRSQER ENSBTAP00000016131/1-1113 QFLEEAMTNA NKEKHFLKEE KTKLSQELST VSTEKNKMAG ELEVLRSQER bmy_22465T0/1-846 QFLEESMANA NKEKHFLKEE KTKLSQELST VATEKNKMAG ELEVLRSQER BACU000804/1-1076 QFLEESMANA HKEKHFLKEE KTKLSQELST VATEKNKMAG ELEVLRSQER 801 850 ENSP00000373566/1-1113 RLKEKVTNME VALDKASLQF AECQDIIQRQ EQESVRLKLQ HTLDIKELQG ENSTTRP00000013660/1-1102 RLKEKVANME VALDKASLQF AECQDIIQHQ EQKSVHLKLQ HTLDVKELKG ENSBTAP00000016131/1-1113 RLKEKVANME VALDKASLQF AECQDIIQRQ EQESVRLKLQ HTLDVKELQG bmy_22465T0/1-846 RLKEKVANME VALDKASLQF AECQDIIQRQ EQESVRLKLQ RTLDVKELKG BACU000804/1-1076 RLKEKVANME VALDKASLQF AECQDIIQRQ EQESVRLKLQ HTLDVKELKG 851 900 ENSP00000373566/1-1113 PGYTSNSSLK PRLLQPASVT RSHSNVPSSQ STASFLSHHS TKANTLKEDP ENSTTRP00000013660/1-1102 PGYTSNSSVK PRLLQPSAA- ---------Q SAASFLSHHS TKPNT-KEDP ENSBTAP00000016131/1-1113 PGYTSNSAVK PRLLQPSPAA RSHSNVPSSQ STASFLSHHS MKPNA-KEDP bmy_22465T0/1-846 PGYTSNSSVK PRLLQPSSAA HSHSNVPSSQ SAASFLSH-- ---------- BACU000804/1-1076 PGYTSNSSVK PRLLQPSSAA HSHPNVPSSQ SAASFLSHHS TKPNT-KEDP 901 950 ENSP00000373566/1-1113 TRDLKQLLQE LRSVINEEPA VSLSKTEEDG RT-SLGALED RVRDCITESS ENSTTRP00000013660/1-1102 TRDLKQLLQE LRSVINEEPP VRLGKSEEDG RAPSLGFSDD RIRECITESN ENSBTAP00000016131/1-1113 TRDLKQLLQE LRSVINEEPA VPLGKSEEDG RAPSLGVKDD RVRDCITESS bmy_22465T0/1-846 ---------- ---------- ---------- ---------- ---------- BACU000804/1-1076 TRDLKQLLQE LRSVINEEPP VPLGKSEEDG RAPSLGVS-- ---------- 951 1000 ENSP00000373566/1-1113 LRSDMCHRSN NSLRDSTEGS KSSETLSREP VTLHAGDRED PSGCFTFTSA ENSTTRP00000013660/1-1102 LRLEICLRSN NS-RECTEGS ESSETLHRKP VTLHTGKLEN PPSCFTFPSA ENSBTAP00000016131/1-1113 LRLVICHRSN NSLRESTEGS KSSETFSREP VTLHVAELED PPGCFVFPSA bmy_22465T0/1-846 ---------- ---------- ---------- ---------- ---------- BACU000804/1-1076 ---------- ---------- ----YVAVEP VTLHTGELGD PPSCFAFPSA 1001 1050 ENSP00000373566/1-1113 ASPSVKNSAS RSFNSSPKKS PVHSLLTSSV EGSIGSTSQY RSAKPIHSSD ENSTTRP00000013660/1-1102 GSPSVKNSAS HSFHSSPKKS PIHSSLTSSA EDSIGSTPQY RSTKPVHSPD ENSBTAP00000016131/1-1113 GSPSVKNSAS RSFHSSPKKS PVHSLLTSSV EDSIGSSPQY RSTKPVHSPD bmy_22465T0/1-846 ---------- ---------- ---------- ---------- ---------- BACU000804/1-1076 GNPSVKNSAS HSFHSSPKKS PIHSLLTSSV EDSIGSTPQY RSTKPVHSPD 1051 1100 ENSP00000373566/1-1113 SVKDSQSPPI ETTGKTCRKL QNRLESLQTL VEDLQLKNQ- ---------- ENSTTRP00000013660/1-1102 SVKASQSQPI ETTGKTCRKL QNRLESLQNL VEDLQMKNE- ---------- ENSBTAP00000016131/1-1113 SVKASQSQPI ETTGKTCRKL QTRLESLQTL VEDLQMKNQ- ---------- bmy_22465T0/1-846 ---------- ---------- ---------- ---------- ---------- BACU000804/1-1076 SVKASQSQPI ETTGKTCRKL QNRLESLQTL VEDLQMKNQG TVYIFGEIFL 1101 1150 ENSP00000373566/1-1113 ---------- ----AMSSMI RNQEKRIQKV KDQEKMLLK- ---------- ENSTTRP00000013660/1-1102 ---------- ----AMSSMI RNQEERIQKV KDQEKMLLK- ---------- ENSBTAP00000016131/1-1113 ---------- ----AMSSMI RNQEKRIQKV KDQEKMLLK- ---------- bmy_22465T0/1-846 ---------- ---------- ---------- ---------- ---------- BACU000804/1-1076 VQKNTHLPFR LSLLSVVPLK RILNKKFRNL SQNMSVLTMP NAWINSVTLG 1151 1200 ENSP00000373566/1-1113 --- ENSTTRP00000013660/1-1102 --- ENSBTAP00000016131/1-1113 --- bmy_22465T0/1-846 --- BACU000804/1-1076 RSL