KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:58:21 2014 Check: 00 ..
Name: ENSP00000264613/1-1065 Len: 1254 Check: 3112 Weight: 1.00
Name: ENSBTAP00000016137/1-1085 Len: 1254 Check: 6363 Weight: 1.00
Name: ENSTTRP00000004447/1-1060 Len: 1254 Check: 2355 Weight: 1.00
Name: bmy_17315T0/1-665 Len: 1254 Check: 4254 Weight: 1.00
Name: BACU012796/1-1061 Len: 1254 Check: 7300 Weight: 1.00
//
1 50
ENSP00000264613/1-1065 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000016137/1-1085 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004447/1-1060 ---------- ---------- ---------- ---------- ----------
bmy_17315T0/1-665 EIRTYIWQIP ERAGPTSKDF ECIPWFYYST VDVVMDLNSR LVGPLIVCRK
BACU012796/1-1061 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000264613/1-1065 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000016137/1-1085 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004447/1-1060 ---------- ---------- ---------- ---------- ----------
bmy_17315T0/1-665 DTKASIVHRV LHFMIVNENK SWYFEENINT YSQESNQVDR SDATLDLSNQ
BACU012796/1-1061 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000264613/1-1065 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000016137/1-1085 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004447/1-1060 ---------- ---------- ---------- ---------- ----------
bmy_17315T0/1-665 MHAINGRMFG NNQGLTFHVR DEVNWYLIGM GGEFDLHTVH FHGHSFQYTS
BACU012796/1-1061 ---------- ---------- ---------- ---------- ----------
151 200
ENSP00000264613/1-1065 ---------- ----MKILIL GIFLFLCSTP AWAKEKHYYI GIIETTWDYA
ENSBTAP00000016137/1-1085 ---------- ----MKIFLL CIFLILCGTS AWAKDKHYYI GIIETAWNYA
ENSTTRP00000004447/1-1060 ---------- ----MKTSLL CIFLILCSTS AWVKDKHYYI GIIETTWDYA
bmy_17315T0/1-665 ILCETLTRLQ EEKKMKISLL CIFLILCSTS AWAKDKHYYI GIIETTWDYA
BACU012796/1-1061 ---------- ----MKISLL CIFLILCSTS AWAKDKHYYI GIIETTWDYA
201 250
ENSP00000264613/1-1065 SDHGEKKLIS VDTEHSNIYL QNGPDRIGRL YKKALYLQYT DETFRTTIEK
ENSBTAP00000016137/1-1085 SDYGEKKLIS VDTEHSNIYL QNGPNRIGSV YKKAVYLQYT DENFRTVIEK
ENSTTRP00000004447/1-1060 SDHGEKKLIS VDTEHANIYL QNGSNRIGKV YKKAVYLQYT DETFGTIIEK
bmy_17315T0/1-665 SDHGEKKLIS VDTEHSNIYL QNGPNRIGRV YKKALYIQYT DETFRTIIEK
BACU012796/1-1061 SDHGEKKLIS VDTEHSNIYL QNGPNRIGKV YKKALYLQYT DETFKTIIEK
251 300
ENSP00000264613/1-1065 PVWLGFLGPI IKAETGDKVY VHLKNLASRP YTFHSHGITY YKEHEGAIYP
ENSBTAP00000016137/1-1085 PVWLGFLGPI IKAETGDKVY VHLKNFASRP YTFHAHGMTY YKEHEGAIYP
ENSTTRP00000004447/1-1060 PVWLGFLGPI IKAETGDRVY VHLKNFASRP YTFHAHGMTY YKEHEGAIYP
bmy_17315T0/1-665 PVWLGFLGPI IKAETGDTVY VHFKNFASRP YTFHAHGMTY YKEHEGAIYP
BACU012796/1-1061 PVWLGFLGPI IKAETGDTVY VHFKNFASRP YTFHAHGMTY YKEHEGAIYP
301 350
ENSP00000264613/1-1065 DNTTDFQRAD DKVYPGEQYT YMLLATEEQS PGEGDGNCVT RIYHSHIDAP
ENSBTAP00000016137/1-1085 DNTTDFQKAD DKVQPGEQCM YILHANPEQG PGQEDSNCVT RIYHSHIDAP
ENSTTRP00000004447/1-1060 DNTTDFQKAD DKVRPGEQCM YILHANPEQG PGEEDSNCVT RIYHSHIDAP
bmy_17315T0/1-665 DNTTDFQKAD DKVRPGEQCM YILHANPEQG PGEEDSNCVT RIYHSHIDAP
BACU012796/1-1061 DNTTDFQKAD DKVRPGEQCM YILHANPEQG PGKEDSNCVT RIYHSHIDAP
351 400
ENSP00000264613/1-1065 KDIASGLIGP LIICKKDSLD KEKEKHIDRE FVVMFSVVDE NFSWYLEDNI
ENSBTAP00000016137/1-1085 KDIASGLIGP LIHCKKDSLD EEKEKNIDKE FVVMFSVVDE NLSWYLEENI
ENSTTRP00000004447/1-1060 RDIAAGLIGP LIHCKKDSLD KEEEKNIDKE FVVMFSVVDE NLSWYLEDNI
bmy_17315T0/1-665 RDIATGLIGP LIHCKKDSLD KEKEKNIDEE FVVMFSVVDE NLSWYLEDNI
BACU012796/1-1061 RDIATGLIGP LIHCKKDSLD KEKEKNIDEE FVVMFSVVDE NLSWYLEDNI
401 450
ENSP00000264613/1-1065 KTYCSEPEKV DKDNEDFQES NRMYSVNGYT FGSLPGLSMC AEDRVKWYLF
ENSBTAP00000016137/1-1085 KTYCSEPEKV EKDNEDFQES NRMYSVNGYA FGSLPGLSMC AKDRVKWYLF
ENSTTRP00000004447/1-1060 KTYCSEPEEV DKDNEDFQES NRMYSVNGYA FGSLPGLSMC AEDRVKWYLF
bmy_17315T0/1-665 KTYCSEPEKV DKDNEDFQES NRMYSVNGYA FGSLPGLSMC AEDRVKWYLF
BACU012796/1-1061 KTYCSEPEKV DKDNEDFQES NRMYSVNGYA FGSLPGLSMC AEDRVKWYLF
451 500
ENSP00000264613/1-1065 GMGNEVDVHA AFFHGQALTN KNYRIDTINL FPATLFDAYM VAQNPGEWML
ENSBTAP00000016137/1-1085 GMGNEIDVHA AFFHGQVLTS KNYRVDTINL FPATLFDALM VAQNPGQWML
ENSTTRP00000004447/1-1060 GMGNEVDVHA AFFHGQTLTN KNYRVDTINL FPATLFDAFM VAQNPGEWML
bmy_17315T0/1-665 GMGNEVDVHS AFFHGQALTN KNYRVDTINL FPATLFDAFM VAQNPGEWML
BACU012796/1-1061 GMGNEVDVHA AFFHGQVLTS KNYRVDTINL FPATLFDAFM VAQNPGEWML
501 550
ENSP00000264613/1-1065 SCQNLNHLKA GLQAFFQVQE CNKSSSKDNI RGKHVRHYYI AAEEIIWNYA
ENSBTAP00000016137/1-1085 SCQNLNHLKA GLQAFFWVQD CKKSSSKDNI HGK-IRHYYI AAEEVIWNYA
ENSTTRP00000004447/1-1060 SCQNLNHLKA GLQAFFWVQD CKKPSSENDI HGKHVRHYYI AAEEIIWNYA
bmy_17315T0/1-665 SCQNLNHLKA GLQAFFWVQD CQKPSSENDI RGKHVRHYYI AAEEIIWNYA
BACU012796/1-1061 SCQNLNHLKA GLQAFFWVQD CQKPSSENDI RGKHVRHYYI AAEEIIWNYA
551 600
ENSP00000264613/1-1065 PSGIDIFTKE NLTAPGSDSA VFFEQGTTRI GGSYKKLVYR EYTDASFTNR
ENSBTAP00000016137/1-1085 PSGIDAFTKE NLRAPGSASE AFFEQGPTRI GGSYKKLVYR EYTDASFSNQ
ENSTTRP00000004447/1-1060 PSGIDTFTKE NLTAPGSDSE VFFEHGSTRI GGSYKKLVYR EYTDASFTDR
bmy_17315T0/1-665 PSGIDTFTKE NLTAPGSDSE VFFEHGSTRI GGSYKKLVYR EYTDGSFTNR
BACU012796/1-1061 PSGIDTFTKE NLTAPGSDSE VFFEHGSTRI GGSYKKLVYR EYTDGSFTNR
601 650
ENSP00000264613/1-1065 KERGPEEEHL GILGPVIWAE VGDTIRVTFH NKGAYPLSIE PIGVRFNKNN
ENSBTAP00000016137/1-1085 KQRGPEEEHL GILGPVISAE VGDTIRVTFH NKAAHPLSIE PIGVRVDKKN
ENSTTRP00000004447/1-1060 KERGPEEEHL GILGPVISAE VGDTIRVTFH NKGTYPLSIE PIGVRVDKSN
bmy_17315T0/1-665 KERGPEEEHL GILGPVISAE VGDTIRVTFH NKGTYPLSIE PIGVRVDKSN
BACU012796/1-1061 KERGPEEEHL GILGPVISAE VGDTIRVTFH NKGTYPLSIE PIGVRVDKSN
651 700
ENSP00000264613/1-1065 EGTYYSPNYN PQSRSVPPSA SHVAPTETFT YEWTVPKEVG PTNADPVCLA
ENSBTAP00000016137/1-1085 EGTY----YS PSGSGPPPSG SHVAPKGTFT YEWTVPREVG PTYKDPVCLA
ENSTTRP00000004447/1-1060 EGTY------ ISRSAPPSSA SHVVPEGTFT YEWTVPKEVG PTYKDPVCLA
bmy_17315T0/1-665 EGTY----YN SSRSE----- ---------- ---------- ----------
BACU012796/1-1061 EGTY----YN SSRSAPPPSA SHVVPKGTFT YEWTVPKEVG PTYKDPVCLA
701 750
ENSP00000264613/1-1065 KMYYSAVEPT KDIFTGLIGP MKICKKGSLH ANGRQKDVDK EFYLFPTVFD
ENSBTAP00000016137/1-1085 KMYYSAVDPT KDIFTGLIGP MKICRNGTLL ANGRLKDVDK EFYLFPTVFD
ENSTTRP00000004447/1-1060 KMYYSAVDPT KDIFTGLIGP MKICRNGSLL ANGRLKDVDK EFYLFPTVFD
bmy_17315T0/1-665 ---------- ---------- ---------- ---------- ----------
BACU012796/1-1061 KMYYSAVDPT KDIFTGLIGP MKICRKGSLL ANGRLKDVDK EFYLFPTVFD
751 800
ENSP00000264613/1-1065 ENESLLLEDN IRMFTTAPDQ VDKEDEDFQE SNKMHSMNGF MYGNQPGLTM
ENSBTAP00000016137/1-1085 ENESLLLDDN IKMFTTAPDQ VDKENEDFQE SNKMHSMNGF MYGNQPGLSM
ENSTTRP00000004447/1-1060 ENESLLLDDN IRMFTTAPDQ VDKENEDFQE SNKMHSMNGF MYGNQPGLNM
bmy_17315T0/1-665 ---------- ---------- ---------- ---------- ----------
BACU012796/1-1061 ENESLLLDDN IRMFTTAPDQ VDKENEDFQE SNKMHSMNGF MYGNQPGLNM
801 850
ENSP00000264613/1-1065 CKGDSVVWYL FSAGNEADVH GIYFSGNTYL WRGERRDTAN LFPQTSLTLH
ENSBTAP00000016137/1-1085 CQGDSVMWYL FSAGNEVDIH GIYFSGNTFL SRGERRDTAN LFPQTSLSLF
ENSTTRP00000004447/1-1060 CQGDSVVWYL FSAGNEVDVH GIYFSGNTYL SRGERRDTAN LFPQTSLRLF
bmy_17315T0/1-665 ---------- ---------- ---------- ---------- ----------
BACU012796/1-1061 CQGDSVVWYL FSAGNEVDVH GIYFSGNTYL SRGERRDTAN LFPQTSLRLF
851 900
ENSP00000264613/1-1065 MWPDTEGTFN VECLTTDHYT GGMKQKYTVN QCRRQSEDST FYLGERTYYI
ENSBTAP00000016137/1-1085 MKPDTAGTFD VECLTTDHYT GGMKQKYTVS QCSQRSEDLY LYLGERTYYI
ENSTTRP00000004447/1-1060 MQPDTEGTFD VECLTTDHYT GGMKQKYTVN QCRQPSENSY HYLGERTYYI
bmy_17315T0/1-665 ---------- ---------- ---------- ---------- ----------
BACU012796/1-1061 MQPDTEGTFD VECLTTDHYT GGMKQKYTVN QCSRPSENSY HYLGERTYYI
901 950
ENSP00000264613/1-1065 AAVEVEWDYS PQREWEKELH HLQEQNVSNA FLDKGEFYIG SKYKKVVYRQ
ENSBTAP00000016137/1-1085 AAVEVEWDYS PSRKWEKELH HLQEQNLSNA FLDKEEFYIG SKYKKVVYRQ
ENSTTRP00000004447/1-1060 AAVEVEWDYS PSRKWEKELH HLQELNLSNA FLDKEEFYIG SKYKKVVYRR
bmy_17315T0/1-665 ---------- ---------- ---------- ---------- ----------
BACU012796/1-1061 AAVEVEWDYS PSRKWEKELH HLQELNLSNA FLDKEEFYIG SKYKKVVYRQ
951 1000
ENSP00000264613/1-1065 YTDSTFRVPV ERKAEEEHLG ILGPQLHADV GDKVKIIFKN MATRPYSIHA
ENSBTAP00000016137/1-1085 FTDSTFQVPV QRKGEEEHLG ILGPQLHANV GDKVNIIFKN MATRPYSIHA
ENSTTRP00000004447/1-1060 FTDSTFQVAE ERKPEEEHLG ILGPQLHADV GDKVNIIFKN MATRSYSIHA
bmy_17315T0/1-665 ---------- ---------- ---------- ---------- ----------
BACU012796/1-1061 FTDSTFQVPG ERKPEEEHLG ILGPQLHAGV GDKVNIIFKN MATRSYSIHA
1001 1050
ENSP00000264613/1-1065 HGVQTESSTV TPTLPGETLT YVWKIPERSG AGTEDSACIP WAYYSTVDQV
ENSBTAP00000016137/1-1085 HGVKTESSTV TPTAPGETRT YIWKIPERSG AGRDDSPCIP WVYYSTVDRV
ENSTTRP00000004447/1-1060 HGVKTESSTV TPTAPGETRT YIWKIPERSG AGIEDSPCIP WAYYSTVDRV
bmy_17315T0/1-665 ---------- ---------- ---------- ---------- ----------
BACU012796/1-1061 HGVKTENPTV TPTAPGETRT YVWKIPERSG AGIDDSPCIP WAYYSTVDRV
1051 1100
ENSP00000264613/1-1065 KDLYSGLIGP LIVCRRPYLK VFNPRRKLEF ALLFLVFDEN ESWYLDDNIK
ENSBTAP00000016137/1-1085 KDLFSGLIGP LIVCRKHYLK VFNPIKKLEF SLLFLVFDEN ESWYLDDNIK
ENSTTRP00000004447/1-1060 KDLFSGLIGP LIVCRKHXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
bmy_17315T0/1-665 ---------- ---------- ---------- ---------- ----------
BACU012796/1-1061 KDLYSGLIGP LIVCRKHYLQ VFNPIKKLEF SLLFLVFDEN ESWYLDDNIK
1101 1150
ENSP00000264613/1-1065 TYSDHPEKVN KDDEEFIESN KMHAINGRMF GNLQGLTMHV GDEVNWYLMG
ENSBTAP00000016137/1-1085 TYSDHPEKVD KANEEFMESN KMHAINGRMF GNLQGLTMHV GDEVNWYLMG
ENSTTRP00000004447/1-1060 XXXXXXXXXX XXXXXXXXXX XXXXINGRMF GNLQGLTMHV GDEVNWYLMG
bmy_17315T0/1-665 ---------- ---------- ---------- ---------- ----------
BACU012796/1-1061 TYSDHPEKVD KANDEFIESN KMHAINGRMF GNLQGLTMHV GDEVNWYLMG
1151 1200
ENSP00000264613/1-1065 MGNEIDLHTV HFHGHSFQYK HRGVYSSDVF DIFPGTYQTL EMFPRTPGIW
ENSBTAP00000016137/1-1085 MGNEVDLHSV HFHGHSFQYQ HRGVYTSDVF DLFPGTYQTV EMTPKTPGIW
ENSTTRP00000004447/1-1060 MGNEIDLHSV HFHGHSFQYQ HRGIYSSDVF DIFPGTYQTL EMSPKTPGIW
bmy_17315T0/1-665 ---------- ---------- ---------- ------YNTL ----------
BACU012796/1-1061 MGNEIDLHSV HFHGHSFQYQ HRGVYSSDVF DIFPGTYQTL EMSPKTPGIW
1201 1250
ENSP00000264613/1-1065 LLHCHVTDHI HAGMETTYTV LQNEDTKSG- ---------- ----------
ENSBTAP00000016137/1-1085 LLHCHVTDHI HAGMETTYTV LPNEGICHEY KLLCLVAYTL MIQLNTKYQR
ENSTTRP00000004447/1-1060 LLHCHVTDHI HAGMETTYTV LPNEETKSGY ---------- ----------
bmy_17315T0/1-665 ---------- ---------- ---------- ---------- ----------
BACU012796/1-1061 LLHCHVTDHI HAGMETTYTV LPNEETQSG- ---------- ----------
1251 1300
ENSP00000264613/1-1065 ----
ENSBTAP00000016137/1-1085 NVLH
ENSTTRP00000004447/1-1060 ----
bmy_17315T0/1-665 ----
BACU012796/1-1061 ----