KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:23 2014 Check: 00 .. Name: BACU006522/1-710 Len: 769 Check: 8541 Weight: 1.00 Name: ENSP00000300952/1-468 Len: 769 Check: 8090 Weight: 1.00 Name: bmy_06664T0/1-437 Len: 769 Check: 3606 Weight: 1.00 Name: ENSTTRP00000010475/1-348 Len: 769 Check: 594 Weight: 1.00 Name: ENSBTAP00000016142/1-498 Len: 769 Check: 5599 Weight: 1.00 // 1 50 BACU006522/1-710 MSFTFASPTQ VFFNGANVRQ VDVPTQTGAF GILAAHVPTL QVLRPGLVVV ENSP00000300952/1-468 --------ME PQPGGARSCR RGAPGGACEL GPAAEAAPM- ------SLAI bmy_06664T0/1-437 --------ME PQPGGARSCR RGAPGGACDL GPAAETAPM- ------SLAI ENSTTRP00000010475/1-348 ---------- ---------- -GAPRGTCER GPAAETAPM- ------SLAI ENSBTAP00000016142/1-498 --------ME PQPGGARSCR RGAPGGACEL SPTAETAPM- ------SLAI 51 100 BACU006522/1-710 HAEDGTISKY FVSSGSVTVN ADSSVQLLAE EAVTLDMLDL GVAKANLEKA ENSP00000300952/1-468 HSTTGT--RY -----DLAVP PDETVE---- ---------- -----GLRKR bmy_06664T0/1-437 HSTTGT--RY -----ELSVP PDETPH---- ---------- -----PLS-- ENSTTRP00000010475/1-348 HSTTGT--RY -----ELSVP PDETVE---- ---------- -----GLRKR ENSBTAP00000016142/1-498 HSTTGT--RY -----ELSVP PDETVE---- ---------- -----GLRKR 101 150 BACU006522/1-710 QSELLGATDE AMRAEIQIRI EANEALVKAL DRLISGKLQE FGVGDGSKLT ENSP00000300952/1-468 LSQRLKVPKE RL-------- ----ALLHKD TRLSSGKLQE FGVGDGSKLT bmy_06664T0/1-437 -SSPL----- ---------- ---------- SRLSSGKLQE FGVGDGSKLT ENSTTRP00000010475/1-348 LSQRLKVPKE RL-------- ----ALLHKD TRLSSGKLQE LGVGDGSKLT ENSBTAP00000016142/1-498 LSQRLKVPKE RL-------- ----ALLHKD TRLSSGKLQE FGVGDGSKLT 151 200 BACU006522/1-710 LVPTVEAGLM SQASRPEQSV MQALESLTET QVSDFLSGRS PLTLALRVGD ENSP00000300952/1-468 LVPTVEAGLM SQASRPEQSV MQALESLTET QVSDFLSGRS PLTLALRVGD bmy_06664T0/1-437 LVPTVEAGLM SQASRPEQSV MQALESLTET QVSDFLSGRS PLTLALRVGD ENSTTRP00000010475/1-348 LVPTVEAGLM SQASRPEQSV MQALESLTET QVSDFLSGRS PLTLALRVGD ENSBTAP00000016142/1-498 LVPTVEAGLM SQASRPEQSV MQALESLTET QVSDFLSGRS PLTLALRVGD 201 250 BACU006522/1-710 HMMFVQLQLA AQHAPLQHRH VLAAAAAATR GDPSVTTTPV SSPCRPVXXX ENSP00000300952/1-468 HMMFVQLQLA AQHAPLQHRH VLAA------ ---------- ---------- bmy_06664T0/1-437 HMMFVQLQLA AQHAPLQHRH VL-------- ---------- ---------- ENSTTRP00000010475/1-348 HMMFVQLQLA AQHAPLQHRH VL-------- ---------- ---------- ENSBTAP00000016142/1-498 HMMFVQLQLA AQHAPLQHRH VL-------- ---------- ---------- 251 300 BACU006522/1-710 XXXXXXXXXX XXXXXXLRVG DHIMFVQLQL AAQHAPLQHR HVLAAAAAAT ENSP00000300952/1-468 ---------- ---------- ---------- ---------- ---AAAAAAA bmy_06664T0/1-437 ---------- ---------- ---------- ---------- ---AAAATAA ENSTTRP00000010475/1-348 ---------- ---------- ---------- ---------- ---AAAAAAA ENSBTAP00000016142/1-498 ---------- ---------- ---------- ---------- ---AAAAAAT 301 350 BACU006522/1-710 RGDPSVTPTP VSSPCRPVSS AARVPPVPTS PAPAS-SPVT AGSFRSHSAS ENSP00000300952/1-468 RGDPSIA-SP VSSPCRPVSS AARVPPVPTS PSPASPSPIT AGSFRSHAAS bmy_06664T0/1-437 RGDPSVTTTP VSSPCRPVSS TARVPPVPTS PAPAS-SPVT AGSFRSHSAS ENSTTRP00000010475/1-348 RGDPSVTTTP VSSPCRPVSS ATRVPPVPTG PAPTS-SPVT AGSFRSHSAS ENSBTAP00000016142/1-498 RGDPSMTTTP VSSPCRPVSS AARVPPVPTS PAPAS-SPVT AGSFRSHSAS 351 400 BACU006522/1-710 TTCPE----- ---------- ---------- ---------- ---------- ENSP00000300952/1-468 TTCPE----- ---------- ---------- ---------- ---------- bmy_06664T0/1-437 TTCPE----- ---------- ---------- ---------- ---------- ENSTTRP00000010475/1-348 ATCPE----- ---------- ---------- ---------- ---------- ENSBTAP00000016142/1-498 TTCPEICLLY PESHSCPHNL VLHGMVGDIL ALNPKGYSHT PSSCALLPHQ 401 450 BACU006522/1-710 QMDCSAPASA GASPTSPT-- --GGSPTSRS RKPGAVIESF VNHAPGVFSG ENSP00000300952/1-468 QMDCSPTASS SASPGASTTS TPGASPAPRS RKPGAVIESF VNHAPGVFSG bmy_06664T0/1-437 QMDCSPPASA GASPTSPT-- --GGSPTSRS RKPGAVIESF VNHAPGVFSG ENSTTRP00000010475/1-348 QMDCSPTAST GASPTSPA-- --GGSPTSRS RKPGAVIESF VNHAPGVFSG ENSBTAP00000016142/1-498 QMDCSPAAST GASPTSPT-- --GSSPTSRS RKPGAVIESF VNHAPGVFSG 451 500 BACU006522/1-710 TFSGTLHPNC QDSSGRPRRD IGTILQILND LLSATRHYQG MPPSLTQLRC ENSP00000300952/1-468 TFSGTLHPNC QDSSGRPRRD IGTILQILND LLSATRHYQG MPPSLAQLRC bmy_06664T0/1-437 TFSGTLHPNC QDSSGRPRRD IGTILQILND LLSATRHYQG MPPSLTQLRC ENSTTRP00000010475/1-348 TFSGTLHPNC QDSSGRPRRD IGTILQILND LLSATRHYQG MPPSLTQLRC ENSBTAP00000016142/1-498 TFSGTLHPNC QDSSGRPRRD IGTILQILND LLSATRHYQG MPPSLTQLRC 501 550 BACU006522/1-710 HAQCA----- PDLAPKTTSC EKLAAAAPAS L----SQAQL CKPPGDRLRQ ENSP00000300952/1-468 HAQCSPASPA PDLAPRTTSC EKLTAAPSAS LLQGQSQIRM CKPPGDRLRQ bmy_06664T0/1-437 HAQCA----- PDLAPKTTSC EKLAAAAPAS L----SQARL CKPPGDRLRQ ENSTTRP00000010475/1-348 HAQCA----- PDLAPKTTSC EKLAAATPAS L----SQARL CKPP------ ENSBTAP00000016142/1-498 HAQCT----- PDLGPKTTSC EKLAAAAPAS L----SQARL CKPPGDRLRQ 551 600 BACU006522/1-710 TENRATRCKV ERLQLLLQQK RLRRKARRDA RGPYHWPPSR KAGRSDSTGG ENSP00000300952/1-468 TENRATRCKV ERLQLLLQQK RLRRKARRDA RGPYHWSPSR KAGRSDSSSS bmy_06664T0/1-437 TENRATRCKV ERLQLLLQQK RLRRKARRDA RGPYHWPPSR KAGRSDSTSG ENSTTRP00000010475/1-348 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016142/1-498 TENRATRCKV ERLQLLLQQK RLRRKARRDA RGPYHWPPSR KAGRSDSTGS 601 650 BACU006522/1-710 GGGGXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000300952/1-468 GGGGSPSEAS GLG------- ---------- ---------- ---------- bmy_06664T0/1-437 GGGSSPSEAA GLG------- ---------- ---------- ---------- ENSTTRP00000010475/1-348 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016142/1-498 GGGGSPSEAA GLG------- ---------- ---------- ---------- 651 700 BACU006522/1-710 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000300952/1-468 ---------- ---------- ---------- ---------- ---------- bmy_06664T0/1-437 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010475/1-348 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016142/1-498 ---------- ---------- ---------- ---------- ---------- 701 750 BACU006522/1-710 XXXXXXXXAF FFFFFFLKFH FLPWFSELSM DLGSCLLGLA HTPRPSLHLP ENSP00000300952/1-468 ---------- ------LDFE DSVWKPEVNP DIKSEFVVA- ---------- bmy_06664T0/1-437 ---------- ------LDFE DAVWKPEVNP DIKSEFVVA- ---------- ENSTTRP00000010475/1-348 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016142/1-498 ---------- ------LDFE DSVWKPEVNP DIKSEFVVA- ---------- 751 800 BACU006522/1-710 SSSPTWPGPS RPPSQAPNM ENSP00000300952/1-468 ---------- --------- bmy_06664T0/1-437 ---------- --------- ENSTTRP00000010475/1-348 ---------- --------- ENSBTAP00000016142/1-498 ---------- ---------