KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:26 2014 Check: 00 .. Name: ENSTTRP00000006359/1-1145 Len: 1198 Check: 5972 Weight: 1.00 Name: ENSP00000384222/1-1192 Len: 1198 Check: 5885 Weight: 1.00 Name: ENSBTAP00000016172/1-1152 Len: 1198 Check: 2969 Weight: 1.00 Name: bmy_13029T0/1-1016 Len: 1198 Check: 1284 Weight: 1.00 Name: BACU007170/1-1094 Len: 1198 Check: 3136 Weight: 1.00 // 1 50 ENSTTRP00000006359/1-1145 ---------- ---------- ---------- ---------- ----LTKPLS ENSP00000384222/1-1192 MPRRAGSGQL PLPRGWEEAR DYDGKVFYID HNTRRTSWID PRDRLTKPLS ENSBTAP00000016172/1-1152 ---------- ---------- ---------- ---------- ---RLTKPLS bmy_13029T0/1-1016 ---------- ---------- ---------- ---------- ---------- BACU007170/1-1094 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006359/1-1145 FADCVGDELP WGWEAGFDPQ IGVYYIDHIN KTTQIEDPRK QWRGEQEKML ENSP00000384222/1-1192 FADCVGDELP WGWEAGFDPQ IGVYYIDHIN KTTQIEDPRK QWRGEQEKML ENSBTAP00000016172/1-1152 FADCVGDELP WGWEAGFDPQ IGVYYIDHIN KTTQIEDPRK QWRREQEKML bmy_13029T0/1-1016 ---------- ---------- ---------- ---------- ---------- BACU007170/1-1094 ---------- ---------- ---------- ---------- --------ML 101 150 ENSTTRP00000006359/1-1145 KDYLSVAQDA LRTQKELYHV KEQRLALALD -YVRLNDAY- EKSSSRTSLF ENSP00000384222/1-1192 KDYLSVAQDA LRTQKELYHV KEQRLALALD EYVRLNDAYK EKSSSHTSLF ENSBTAP00000016172/1-1152 KDYLSVAQDA LQTQQELYHV KEQRLALALD EYVRLNDAYK EKSSSRTSLF bmy_13029T0/1-1016 ---------- -------MHI ---------- ---------- ---------- BACU007170/1-1094 KDYLSVAQDA LRTQKELYHV KEQRLALALD EYVRLNDAYK EKSSSRTSLF 151 200 ENSTTRP00000006359/1-1145 SGSSSSTKYD PDILKAEIST TRLR-VKKLK RELSQMKQEL LYKEQGFATL ENSP00000384222/1-1192 SGSSSSTKYD PDILKAEIST TRLR-VKKLK RELSQMKQEL LYKEQGFETL ENSBTAP00000016172/1-1152 SGSSSSTKYD PEILKAEIST TRLRKVKNLK RELSQMKQEL LYKEQGFATL bmy_13029T0/1-1016 ---------- -DIWQLKI-- --IQ-VKKLK RELSQMKQEL LYKEQGFATL BACU007170/1-1094 SGSSSSTKYD PDILKAEIST TRLR-VKKLK RELSQMKQEL LYKEQGFATL 201 250 ENSTTRP00000006359/1-1145 KQIDKKMSGG QSGYELSEAK AILTELKSIR KAISSGEKEK QDLMQSLAKL ENSP00000384222/1-1192 QQIDKKMSGG QSGYELSEAK AILTELKSIR KAISSGEKEK QDLMQSLAKL ENSBTAP00000016172/1-1152 KQIDKKMSGG QSGYELSEAK AILMELKSIR KAISSGEKEK QDLMQSLAKL bmy_13029T0/1-1016 KQIDKKMSGG QSGYELSEAK AILTELKSIR KAISSGEKEK QDLMQSLAKL BACU007170/1-1094 KQIDKKMSGG QSGYELSEAK AILTELKSIR KAISSGEKEK QDLMQSLAKL 251 300 ENSTTRP00000006359/1-1145 QERFHLDQSI GRSEPDLRSS PVNSHLSLSR QTLDAGSQTS ISGDIGVRSR ENSP00000384222/1-1192 QERFHLDQNI GRSEPDLRCS PVNSHLCLSR QTLDAGSQTS ISGDIGVRSR ENSBTAP00000016172/1-1152 QGRFHVDQSI GTSEPDLRSS PVSSRLSLSR QTLDVGSQTS ISGDIGVRSR bmy_13029T0/1-1016 QERFHLDQSI GRSEPDLRSS PVNSHLSLSR QTLDAGSQTS ISGDIGVRSR BACU007170/1-1094 QERFHLDQSI GRSEPDLRSS PVNSHLSLSR QTLDAGSQTS ISGDLGVRSR 301 350 ENSTTRP00000006359/1-1145 SNLAEKVRLS LQYEEAKRSM ANLKIELSKL DSEAWPGALD IEKEKLMLIN ENSP00000384222/1-1192 SNLAEKVRLS LQYEEAKRSM ANLKIELSKL DSEAWPGALD IEKEKLMLIN ENSBTAP00000016172/1-1152 SNLAEKVRLS LQYEEAKRSM ANLKIELSKL DSEAWPGTLD VEKEKLMLIH bmy_13029T0/1-1016 SNLAEKVRLS LQYEEAKRSM ANLKIELSKL DSEAWPGALD VEKEKLMLIN BACU007170/1-1094 SNLAEKVRLS LQYEEAKRSM ANLKIELSKL DSEAWPGALE GEKEKLMLIN 351 400 ENSTTRP00000006359/1-1145 EKEELLKELQ FVTPEKRTPD ELESLGAERQ RLEKELLSVR GAPSRALAER ENSP00000384222/1-1192 EKEELLKELQ FVTPQKRTQD ELERLEAERQ RLEEELLSVR GTPSRALAER ENSBTAP00000016172/1-1152 EKEELLKELQ FVTPQRRTQD ELESLEAERQ RLEAELLAVR GVPSQALAER bmy_13029T0/1-1016 EKEELLKELQ FVTPQKRTPD ELESLGAERR RLEEELRSVR GAPSRALAER BACU007170/1-1094 EKEELLKELQ FVTPQKRTPD ELESLGAERR RLEEELRSVR GAPSRALAER 401 450 ENSTTRP00000006359/1-1145 LKLEERRKEL LQKLEETTKL TTYLHSQLKX XXXXXXXXXX XXXXXXXXXX ENSP00000384222/1-1192 LRLEERRKEL LQKLEETTKL TTYLHSQLKS LSASTLSMSS GSSLGSLASS ENSBTAP00000016172/1-1152 LKLEEQRKAL LQKLEETTKL TTCLHSQLKN LSASTLSVSS GSSLGSLASS bmy_13029T0/1-1016 LKLEERRKEL LQKLEETTKL TTYLHSQLKN LSASTLSMSS GSSLGSLASS BACU007170/1-1094 LKLEERRKEL LQKLEETTKL TTYLHSQLKN LSASTLSMSS GSSLGSLASS 451 500 ENSTTRP00000006359/1-1145 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000384222/1-1192 RGSLNTSSRG SLNSLSSTEL YYSSQSDQID VDYQYKLDFL LQEKSGYIPS ENSBTAP00000016172/1-1152 RGSLNTSSRG SLNSLSSSEL YYTSQGDQLD ADYQYKLDFL LQEKGGYMPS bmy_13029T0/1-1016 RGSLNTSSRG SLNSLSSSEL YYTSQGDQLD PDYQYKLDFL LQEKGGYIPS BACU007170/1-1094 RGSLNTSSRG SLNSLSSSEL YYTSQGDQLD PDYQYKLDFL LQEKGGYIPS 501 550 ENSTTRP00000006359/1-1145 XXXXXXXXXX XXXXXXXXXX XXXXX--XXX XXXXXXXXXX XXXXXXXXXX ENSP00000384222/1-1192 GPITTIHENE VVKSPSQPGQ SGLCG--VAA AATGHTPPLA EAPKSVASLS ENSBTAP00000016172/1-1152 GPITTIHEHE VAKSPSQPGQ SGSGGAAAAA AAPGHPAPLA EPPKSVTSLS bmy_13029T0/1-1016 GPITTIHEHE VAKSPSQPGQ SGHCG--TAA AAPGHASALT EAPKSVTSLS BACU007170/1-1094 GPITTIHEHE VAKSPSQPGQ SGPCG--AAA AAPGHAPALT EAPKSVTSLS 551 600 ENSTTRP00000006359/1-1145 XXXXXXXXXX XXXXXXXXXX XXX-XXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000384222/1-1192 SRSSLSSLSP PGSPLVLEGT FPMSSSHDAS LHQFTADFED CELSSHFADI ENSBTAP00000016172/1-1152 SRSSLSSLSP PGSPLVLEGA FPM-STHGSP LHQFSADFED CELSSHFADI bmy_13029T0/1-1016 SRSSLSSLSP PGSPLVLEGT FPL-SPHDGP LHQFSADFED CELSSHFADI BACU007170/1-1094 SRSSLSSLSP PGSPLVLEGA FPL-SPHDVP LHQFSADFED CELSSHFADI 601 650 ENSTTRP00000006359/1-1145 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XVEKSLPKRR ENSP00000384222/1-1192 SLIENQILLD SDSGGASQS- LSEDKDLNEC AREPLYEGTA DVEKSLPKRR ENSBTAP00000016172/1-1152 SLREHQLLLD PDPGGAPSSL LDENKELGEC AQEPLYEGPA DVEKSLPKRR bmy_13029T0/1-1016 GLGEDPLLLD SDPGGVPPS- LSEDKDLTEC AREPPHEGPA DVEKSLPKRR BACU007170/1-1094 GLGEDPLLLD SDPGGVPPS- LSEDKDLTEC AREPPHEGPA DVEKSLPKRR 651 700 ENSTTRP00000006359/1-1145 GIHLLGEKTT CVSAAVSDES VAGDSGVYEA FVKQPSEVED VLYSEEDVAV ENSP00000384222/1-1192 VIHLLGEKTT CVSAAVSDES VAGDSGVYEA FVKQPSEMED VTYSEEDVAI ENSBTAP00000016172/1-1152 GIHLPGEKTA CVSAAVSDES VAGDSGVYEA FVKQPSEAED VPYSEEDAVV bmy_13029T0/1-1016 GIHLLGEKTA CVSAAVSDES VAGDSGVYEA FVKQPSEVED VLYSEEDVAV BACU007170/1-1094 GIHLLGEKTA CVSAAVSDES VAGDSGVYEA FVKQPSEVED VLYSEEDVAV 701 750 ENSTTRP00000006359/1-1145 TETAQVQIGL RYDAKRSSFM VIVAQLRNLH AFLIPHTSKV YFRVALLPSS ENSP00000384222/1-1192 VETAQVQIGL RYNAKSSSFM VIIAQLRNLH AFLIPHTSKV YFRVAVLPSS ENSBTAP00000016172/1-1152 METAQVQIGL RYDAKRSSFV VTVAQLRNLH AFLIPHSSKV YFRVALLPSS bmy_13029T0/1-1016 METAQVQIGL RYDAKRSSFM VIVAQLRNLH AFLIPHTSKV YFRVALLPSS BACU007170/1-1094 METAQVQIGL RYDAKRSSFM VIVAQLRNLH AFLIPHTSKV YFRVALLPSS 751 800 ENSTTRP00000006359/1-1145 TDVSCLFRTK VHPAAESLLF GDVFRVAISQ TALQQKTLRV DLCSVSQHQR ENSP00000384222/1-1192 TDVSCLFRTK VHPPTESILF NDVFRVAISQ TALQQKTLRV DLCSVSKHRR ENSBTAP00000016172/1-1152 SDVSCLFRTK VHPAAESLLF SDVFRVAISQ TALQQKTLRV DLCSVGKHRR bmy_13029T0/1-1016 TDVSCLFRTK VHPAAESLLF SDVFRVAISQ TALQQKTLRV DLCSVSKHQR BACU007170/1-1094 TDVSCLFRTK VHPAAESLLF SDVFRVAISQ TALQQKTLRV DLCSVSKHQR 801 850 ENSTTRP00000006359/1-1145 EECLAGTQIS LADLPFSNEI FTLWYNLLPS KQMPCKKNED ETEDSVFQPS ENSP00000384222/1-1192 EECLAGTQIS LADLPFSSEV FTLWYNLLPS KQMPCKKNE- ENEDSVFQPN ENSBTAP00000016172/1-1152 EECLAGTQIS LADLPFSSGV FTLWYNLLPS KQMPCKKKEE ETEDSVFQPS bmy_13029T0/1-1016 EECLAGTQIS LADLPFSNEI FTLWYNLLPS KQMPCKKNED ETEDS----- BACU007170/1-1094 EECLAGTQIS LADLPFSNEI FTLWYNLLPS KQMPCKKNED ETEDSVFQPS 851 900 ENSTTRP00000006359/1-1145 QPLVDSIDLD AVSALLARTS AELLAVEQEL AQEEEERAGE EQ-RGPDGDW ENSP00000384222/1-1192 QPLVDSIDLD AVSALLARTS AELLAVEQEL AQEEEEESGQ EEPRGPDGDW ENSBTAP00000016172/1-1152 QPLVDSVDLD AVSALLARTS AELLAVEQEL AQ-EKEPGQE EEHRGPDGDW bmy_13029T0/1-1016 ---------D AVSALLARTS AELLAVEQEL AQEEEEPGLE EEPRGPDGDW BACU007170/1-1094 QPLVDSIDLD AVSALLARTS AELLAVEQEL AQEEEEPEQE EEPRGPDGDW 901 950 ENSTTRP00000006359/1-1145 LTMQREASDE IVAEEGAEVK LAEGSCCAED VSSRPSVPEV NEDTSKTENN ENSP00000384222/1-1192 LTMLREASDE IVAEKEAEVK LPEDSSCTED LSSCTSVPEM NEDGNRKESN ENSBTAP00000016172/1-1152 LAMLREASDE IVAKEGAEVK LAEGSRCVED ASSCPSVPKM SEDTSRKDSS bmy_13029T0/1-1016 LTMLREASDE IVAEEGAEVK LAEGGCCAED ISSCPSVPEM NEDTSKTENN BACU007170/1-1094 LTMLREASDE IVAEEGAEVK LAEGSCCAED VSSCPSVPEM NEDTSKTENN 951 1000 ENSTTRP00000006359/1-1145 CANDLGSQPP AGVPALVDKE TNTDEAGSAG VAVRPKDRSG LSARQRPFVR ENSP00000384222/1-1192 CAKDLRSQPP TRIPTLVDKE TNTDEAANDN MAVRPKERSS LSSRQHPFVR ENSBTAP00000016172/1-1152 CASDLGTQPP AGTLALVDKE TNTDEAGGAS MVVRPKDHSS LSARQRPFMR bmy_13029T0/1-1016 CANDLGSQPP AGVPALVDKE TNTDEAGSAS VAVRPKDRSG LSARQRPFVR BACU007170/1-1094 CANDLGSQPA AGVPALVDKE TNTDEAGSAS VAVRPKDRSG LGPRQRPFVR 1001 1050 ENSTTRP00000006359/1-1145 SSVIVRSQTF SPGERSQYVC RLNRSDSDSS TLAKKSLFVR NSTERRSLRV ENSP00000384222/1-1192 SSVIVRSQTF SPGERNQYIC RLNRSDSDSS TLAKKSLFVR NSTERRSLRV ENSBTAP00000016172/1-1152 SSVIVRSQTF SPGERSQYVC RLNRSDSDSS TLAKKSLFVR NSTERRSLRV bmy_13029T0/1-1016 SSVIVRSQTF SPGERSQYVC RLNRSDSDSS TLAKKSLFVR NSTERRSLRV BACU007170/1-1094 SSVIVRSQTF SPGERSQYVC RLNRSDSDSS TLAKKSLFVR NSTERRSLRV 1051 1100 ENSTTRP00000006359/1-1145 KRTVCQPVLR RAAPECPVRT SLDLELDLQA SLTRQSRLND EL-ALRGLRQ ENSP00000384222/1-1192 KRTVCQSVLR RTTQECPVRT SLDLELDLQA SLTRQSRLND ELQALRDLRQ ENSBTAP00000016172/1-1152 KRAVCQPVLR RAAPECPVRT SLDLELDLQA SLTRQSRLND ELQALRGLRQ bmy_13029T0/1-1016 KRAVCQPVLR RAAPECPVRT SLDLELDLQA SLTRQSRLND ELQALRGLRQ BACU007170/1-1094 KRAVCQPVLR RAAPECPVRT SLDLELDLQA SLTRQSRLND ELQALRGLRQ 1101 1150 ENSTTRP00000006359/1-1145 KLEDL-AQGE TDLPPGVLED ERFQKLLRXX XXXXAEQSKE EQKQDLNAEK ENSP00000384222/1-1192 KLEELKAQGE TDLPPGVLED ERFQRLLK-Q AEKQAEQSKE EQKQGLNAEK ENSBTAP00000016172/1-1152 KLEDLKAQGE TDLPPGMLDD ERFQKLLR-Q AGKQAEQSEE EQKQDLNAEK bmy_13029T0/1-1016 KLEDLKAQGE TDLPPGVLED ERFQKLLR-Q AEKQAEQSEE EQKQDLNAEK BACU007170/1-1094 KLEDLKAQGE TDLPPGVLED ERFQKLLR-Q AEKQAEQSRE EQKQDLNAEK 1151 1200 ENSTTRP00000006359/1-1145 LMRQVSKDVC RLREQSRKVP RQVQSFREKI AYFTRAKISI PSLPADDV ENSP00000384222/1-1192 LMRQVSKDVC RLREQSQKVP RQVQSFREKI AYFTRAKISI PSLPADDV ENSBTAP00000016172/1-1152 LMRQVSKDVC RLREQSHKVP RQVQSFREKI AYFTRAKITI PSLSADDV bmy_13029T0/1-1016 LMRQVSKDVC RLREQSRKVP RQVQSFREKI AYFTRAKISI PSLPADDV BACU007170/1-1094 LMRQVSKDVC RLREQSRKVP RQVQSFREKI AYFTRAKISI PSLPADDV