KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:27 2014 Check: 00 .. Name: ENSP00000297562/1-807 Len: 864 Check: 3755 Weight: 1.00 Name: ENSBTAP00000016176/1-794 Len: 864 Check: 3836 Weight: 1.00 Name: ENSTTRP00000011293/1-789 Len: 864 Check: 5520 Weight: 1.00 Name: bmy_12844T0/1-860 Len: 864 Check: 973 Weight: 1.00 Name: BACU012147/1-757 Len: 864 Check: 8732 Weight: 1.00 // 1 50 ENSP00000297562/1-807 MFSAGAESLL HQAREIQDEE LKKFCSRICK LLQAEDLGPD TLDSLQRLFL ENSBTAP00000016176/1-794 ---------- ---REVGAEE LGRFCARVSA LLQAEDWGPD ALDALRRLFL ENSTTRP00000011293/1-789 ---------- ----ELRDEE LGRLCARVCA LLREEDWGPD APDALRRLFL bmy_12844T0/1-860 MFTTGAESLL LQAREIRDEE LGKLCARVCA LLRKEDWGPD ALDALRRLFL BACU012147/1-757 MFTTGAESLL LQAREIRDEE LGKLCTRVCA LLRKEDWGSD ALDALRRLFL 51 100 ENSP00000297562/1-807 IISATKYSRR LEKTCVDLLQ ATLGLPACPE QLQVLCAAIL REMSPSDSLS ENSBTAP00000016176/1-794 IVAATKYSRR LEPTCVALLQ TTLCSPRCPE RLQLLCAAVL REMAPSDSLS ENSTTRP00000011293/1-789 IVSATKYNRR LERPCLALLQ TTLCSPTCPE QLQLLCAAVL REMSPCDSLS bmy_12844T0/1-860 IVSATKYSRR LEKPCVALLQ TTLCSPTCPE QLQLLCAAVL REMSPSDSLS BACU012147/1-757 IVSATKYSRR LEKPCVALLQ TTLCSPTCPE QLQLLCAAVL REMSPSDSLS 101 150 ENSP00000297562/1-807 LAWDHTQNSR QLSLVASVLL AQGDRNEEVR AVGQGVLRAL ESRQPEGPSL ENSBTAP00000016176/1-794 LSCDHAQSSR QLGLVASVLL AQ-GDPQQVR TVGQCVIKVL ESRQPEGPSL ENSTTRP00000011293/1-789 LSCDHIQNTR QLGLVASVLL AQXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12844T0/1-860 LSCDHIQNTR QLGLVASVLL AQ-GDQQQVR SLGQRVLKVL ESRQPEGPSL BACU012147/1-757 LSCDHIQNTR QLGLVASVLL AQ-GDQQQVR SLGQRVLKVL ESRQPEGPSL 151 200 ENSP00000297562/1-807 RHLLPVMAKV VVLSPGTLQE DQATLLSKRL VDWLRYASLQ QGLPH-SGGF ENSBTAP00000016176/1-794 TYLLPVVSKV TSLAPDALPE EQTKALSKRL GEWLRYASVQ QGAAHASGGF ENSTTRP00000011293/1-789 XXXXXXXXXX XXXXXXXXXX XQTRALSKRL GDWLRYASVQ QAVAHSSGGF bmy_12844T0/1-860 RHLLPVVSKV TSLAPDALHE EQTRALSKRL GDWLRYASVQ QGVAHSSGGF BACU012147/1-757 RHLLPVVSKV TSLAPDALHE EQTRALSKRL GDWLRYASVQ QGVAHSSGGF 201 250 ENSP00000297562/1-807 FSTPRARQPG PVTEVDGAVA TDFFTVLSSG HRFTDDQWLN VQAFSMLRAW ENSBTAP00000016176/1-794 FSTPRARQPG PVTEVDGTVA TDFFTVLSTG QRFTEDQRLN VQAFSMLRAW ENSTTRP00000011293/1-789 FSTPRARQLG PVTEVDGAVA TDFFTVLSTG QRFTEDQWLN VQAFSMLRAW bmy_12844T0/1-860 FSTPRARQLG PVTEVDGAVA TDFFTVLSTG QRFTEDQWLN VQAFSMLRAW BACU012147/1-757 FSTPRARQLG PVTEVDGAVA TDFFTVLSTG QRFTEDQWLN VQAFSMLRAW 251 300 ENSP00000297562/1-807 LLHSGPEGPG TLDTDDRSEQ EGSTLSVISA TSSAGRLLPP RERLREVAFE ENSBTAP00000016176/1-794 LLQGGPARPG AADADDRSEL EGSTVSVLSA ASAASHLLPP AEWLREKALE ENSTTRP00000011293/1-789 LLDSGPGGSS APDADDKSEL EGSTLSVLSA ASTAGHLLPP QQWLREKAFE bmy_12844T0/1-860 LLDSDPGGSG APDADDKSEL EGSTRSVLSA TSTASHLLPP QEWLQEKAFE BACU012147/1-757 LLDSEPGGSG APDADDKSEL EGSTRSVLSA TSTASHLLPP QEWLREKAFE 301 350 ENSP00000297562/1-807 YCQRLIEQSN RRALRKGDSD LQKACLVEAV LVLDVLCRQD PSFLYRSLSC ENSBTAP00000016176/1-794 YCQRLLEQSG RRALRKADSD LQKACLVEAV LVLDVLCRQD PSFLYRALPC ENSTTRP00000011293/1-789 YCQRLLEQSN RRALKKADSD LQKACLVEAV LVLDVLCQQD PSFLYRTLSC bmy_12844T0/1-860 YCQRLLEQSN RRALRKADSD LQKACLVEAV LVLDVLCRQD PSFLYRTLSC BACU012147/1-757 YCQRLLEQSN RRALRKADSD LQKACLVEAV LVLDVLCRQD PSFLYRTLSC 351 400 ENSP00000297562/1-807 LKALHGRVRG DPASVRVLLP LAHFFLSHGE AAAVDSEAVY QHLFTRIPVE ENSBTAP00000016176/1-794 VRALRTRLCG DTACVRALLP IAQFFLHHGE AAAVDADAVC QHLFTRIPSE ENSTTRP00000011293/1-789 LKPLHTRLRG DPAWVRALLP VAQFFLHHGE AAAVDAEAVY QHLFTRIPAE bmy_12844T0/1-860 LKALHTRLRG DPAWVRALLP VAQFFLHHGE AAAVDAEAVY QHLFTRIPAE BACU012147/1-757 LKALHTRLRG DPAWVRGLLP VAQFFLHHGE AAAVDAEAVY QHLFTRIPAE 401 450 ENSP00000297562/1-807 QFHSPMLAFE FIQFCRDNLH LFSGHLSTLR LSFPNLFK-- ---------- ENSBTAP00000016176/1-794 HFHSPMLAFE FVQFCRDHLV LFGSNLDLLR TSFPNLFK-- ---------- ENSTTRP00000011293/1-789 HFHSPMLAFE FVQFCRDSLP LFGRSLGILR TSFPNLFK-- ---------- bmy_12844T0/1-860 HFHSPMLAFE FIQFCRDSLP LFGRNLGILR TSFPNLFKAR SVIHEPEQGL BACU012147/1-757 HFHSPMLAFE FVQFCRDSLP LFGRNLGVLR TSFPNLFK-- ---------- 451 500 ENSP00000297562/1-807 ---------- ---------- ---------- ---------- ----FLAWNS ENSBTAP00000016176/1-794 ---------- ---------- ---------- ---------- ----FLAWSS ENSTTRP00000011293/1-789 ---------- ---------- ---------- ---------- ------AWNS bmy_12844T0/1-860 GGLGRAGPLG QCPGMGWGGG RLCVCPQEGE VGPGLVVELT ALVQFLAWNS BACU012147/1-757 ---------- ---------- ---------- ---------- ----FLAWNS 501 550 ENSP00000297562/1-807 PPLTSEFVAL LPALVDAGTA LEMLHALLDL PCLTAVLDLQ LRSAPAASER ENSBTAP00000016176/1-794 PALTSGFVAL LPVLVDAGTA VEMLHLLLDL PSLTAALDLQ LRASQAASER ENSTTRP00000011293/1-789 PPLTSDFVAL LPSLVDAGTA VEMLHLLLDL PCLTAALDLQ LRSLQAASER bmy_12844T0/1-860 PPLTSDFVAL LPSLVDAGTA VEMLHLLLDL PCLTAALDLQ LRSLQAASER BACU012147/1-757 PPLTSDFVAL LPSLVDAGTA VEMLHLLLDL PCLTAALDLQ LSWLQAASER 551 600 ENSP00000297562/1-807 PLWDTSLRAP SCLEAFRDPQ FQGLFQYLLR PKASGATERL APLHQLLQPM ENSBTAP00000016176/1-794 PLWDVSVRAP GCLEALRDPQ AQGLFQHLLR AKASGTVERL TPLHQLLQPL ENSTTRP00000011293/1-789 PPWDVSIRAP GCLEALRDSQ VQGLFQHLLR AHASGTVERL TPLYRLLQPL bmy_12844T0/1-860 PPWDVSIRAP GCLEAFRDSQ IQGLFQHLLR AQASGTAERL TPLYRLLQPL BACU012147/1-757 PPWDISIRAP GCLEAFRDSQ VHGLFQHLLR AQASGTAERL TPLYRLLQPL 601 650 ENSP00000297562/1-807 AGCARVAQCA QAVPTLLQAF FSAVTQVADG SLINQLALLL LGRSDSLYPA ENSBTAP00000016176/1-794 ASCARVLQCA QAVPTLLRAF FAAVTQFASG ALASQLALLL LERSDSLFQV ENSTTRP00000011293/1-789 AGCARVVQCA EAVPTLLRAF FSAVTQFADG ALASQLALLL LERSDSLYQV bmy_12844T0/1-860 AGCARVVQCA EAVPTLLRAF FSAVTQFADG ALASPLALLL LERSDSLYQV BACU012147/1-757 AGCARVVQCA EAVPTLLQAF FSAVTQFADG ALASQLALLL LERSDSLYQV 651 700 ENSP00000297562/1-807 PGYAAGVHSV LSSQFLALCT LKPSLVVELA RDLLEFLGSV NGLCSRASLV ENSBTAP00000016176/1-794 EGYEADVHRV LSSQFPALCK LHPPLVVERA KELLEFVGSL GGPRSTGHML ENSTTRP00000011293/1-789 PGYEAGVHRV LSSQFPALCK LHPPLVVEQA KELLEFVG-- -GPRSGGHVL bmy_12844T0/1-860 PGYEAGVHRV LSSQFPALCK LHPPLVVEQA KELLEFVG-- -GPRGGGHVL BACU012147/1-757 PGYEAGVHRV LSSQFPALCK LHPPLVVEHA KELLEFVG-- -GPRGGGHVL 701 750 ENSP00000297562/1-807 TSVVWAIGEY LSVTYDRRCT VEQINKFFEA LEALLFEVTQ CRPSAALPRC ENSBTAP00000016176/1-794 TSVVWAVGEY LSVSWDRRCS AEQISRFFEA LEALLFEVTQ SRPSAALPKC ENSTTRP00000011293/1-789 TSVVWAIGEY LSVSWDRRCT VEQINNFFEA LEALLFEVTQ SRPSTTLPKC bmy_12844T0/1-860 TSVVWAIGEY LSVSWDRRCT VEQINNFFEA LEALLFEVTQ SRPSTTLQKC BACU012147/1-757 TSVVWAIGEY LSVSWDRRCT VEQINNFFEA LEALLFEVTQ SRPSTTLPKC 751 800 ENSP00000297562/1-807 PPQVVTVLMT TLTKLASRSQ DLIPRASLLL SKMRTLAHSP ATSSTHSEEG ENSBTAP00000016176/1-794 PPQVITVLMT TLTKLASRSQ DLIPRVSLLL SKMRTLAQSP AVGPVHGEDD ENSTTRP00000011293/1-789 PPQVITVLMT TLTKLASRSQ DLIPRVSLLL SKMRTLAQSA ATGSTPGEEG bmy_12844T0/1-860 PPQVITVLMT TLTKLASRSQ DLIPRVSLLL SKMRSLAQSP ATGSMPSEED BACU012147/1-757 PPQVITVLMT TLTKLASRSQ DLIPRVSLLL SKMRSLAQSP ATGSMPGEED 801 850 ENSP00000297562/1-807 AEAIRTRATE LLTLLKMPSV AQFVLTPSTE VCSPRYHRDA NTALPLALRT ENSBTAP00000016176/1-794 LGAVRTRATE LLNLLKMPSV AQFVLTPSVE VSQPRYHRDC NTALPLALDM ENSTTRP00000011293/1-789 VGAIHTRATE LLNLLKMPSV AQFVFTPSVE VSEPRYHRDT NTALPLVLRT bmy_12844T0/1-860 AGAVRTRATE LLNLLKMPSV AQFVFTPSVE VSEPRYHRDT NMALPLVLRT BACU012147/1-757 VGAIRTRATE LLHPCQR--- ---------- ---------- ---------- 851 900 ENSP00000297562/1-807 VSRLVEREAG LMPG ENSBTAP00000016176/1-794 VSRLLEREAG LLPG ENSTTRP00000011293/1-789 VSRLVEREAG LLPG bmy_12844T0/1-860 VSRLVEREAG LLPG BACU012147/1-757 ---------- ----