KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:28 2014 Check: 00 .. Name: ENSP00000376303/1-803 Len: 859 Check: 7855 Weight: 1.00 Name: ENSTTRP00000005228/1-672 Len: 859 Check: 6456 Weight: 1.00 Name: ENSBTAP00000016188/1-801 Len: 859 Check: 5457 Weight: 1.00 Name: bmy_06368T0/1-799 Len: 859 Check: 900 Weight: 1.00 Name: BACU011068/1-801 Len: 859 Check: 6219 Weight: 1.00 // 1 50 ENSP00000376303/1-803 ---------M AEAHQ----- ---------- -----AVGFR PSLTSDGAEV ENSTTRP00000005228/1-672 ---------M AEAHQ----- ---------- -----AVGFR PSLTSDAGEV ENSBTAP00000016188/1-801 ---------M AEAHQ----- ---------- -----AVGFR PSLTSDAGEV bmy_06368T0/1-799 MLDSRRRTGA PEAHRPSLGL TVTGIGHMQA GGLSPAVGFR PSLTSDAGEM BACU011068/1-801 ---------M AEAHQ----- ---------- -----AVGFR PSLTSDTGEV 51 100 ENSP00000376303/1-803 ELSAPVLQEI YLSGLRSWKR HLSRFWNDFL TGVFPASPLS WLFLFSAIQL ENSTTRP00000005228/1-672 ELSAPMLQEI YLSGLRSWKR HLSRFWNDFL TGVFPASPLS WLFLFSAIQL ENSBTAP00000016188/1-801 ELGVPVLQEI YLSGLRSWKR HLSRFWNDFL TGVFPASPLS WLFLFSAIQL bmy_06368T0/1-799 ELSAPMLQEI YLSGLRSWKR HLSRFW---- ---------- ---------L BACU011068/1-801 ELSAPMLQEI YLSGLRSWKR HLSRFWNDFL TGVFPASPLS WLFLFSAIQL 101 150 ENSP00000376303/1-803 AWFLQLDPSL GLMEKIKELL PDWGGQHHGL RGVLAAALFA SCLWGALIFT ENSTTRP00000005228/1-672 AWFLQLDPSL GLMEKIKELL PDWGGQHHRL RGVLAAALFA SCLWGALIFT ENSBTAP00000016188/1-801 ACFLQLDPSL GLMEKIKESL PDWGGQHHRL RGVLAAALFA SCLWGALIFT bmy_06368T0/1-799 AWFLQLDPSL GLMEKIKELL PDWGGQHHRL RGVLAAALFA SCLWGALIFT BACU011068/1-801 AWFLQLDPSL GLMEKIKELL PDWGGQHHRL RGVLAAALFA SCLWGALIFT 151 200 ENSP00000376303/1-803 LHVALRLLLS YHGWLLEPHG AMSSPTKTWL ALVRIFSGRH PMLFSYQRSL ENSTTRP00000005228/1-672 LHVALRLLLS YHGWLLQPHG ATSSRTKTWL ALVRIFSGRH PMLFSYQRSL ENSBTAP00000016188/1-801 LHVALRLLLS YHGWLLEPHG AMSSPTKTWL ALVRIFSGRH PMLFSYQRSL bmy_06368T0/1-799 LHVALRLLLS YHGWLLQPHG AMSSRTKTWL ALVRIFSGRH PMLFSYQRSL BACU011068/1-801 LHVALRLLLS YHGWLLQPHG AMSSRTKTWL ALVRIFSGRH PMLFSYQRSL 201 250 ENSP00000376303/1-803 PRQPVPSVQD TVRKYLESVR PILSDEDFDW TAVLAQEFLR LQASLLQWYL ENSTTRP00000005228/1-672 PRQPVPSVQD TVRKYLESVR PVLSDEDFDW TAALAREFLR LQASLLQWYL ENSBTAP00000016188/1-801 PRQPVPSVQD TVRKYLESVR PVLSDKDFDW TAGLAQEFLK LQASLLQWYL bmy_06368T0/1-799 PRQPVPSVQD TVRKYLESVR PVLSDEDFDW TAALAREFLR LQASLLQWYL BACU011068/1-801 PRQPVPSVQD TVRKYLESVR PVLSDEDFDW TATLAREFLR LQASLLQWYL 251 300 ENSP00000376303/1-803 RLKSWWASNY VSDWWEEFVY LRSRNPLMVN SNYYMMDFLY VTPTPLQAAR ENSTTRP00000005228/1-672 QLKSWWASNY VSDWWEEFVY LRSRNSLMVN SNYYMMDFLY VTPTPVQAAR ENSBTAP00000016188/1-801 QLKSWWASNY VSDWWEEFVY LRSRNSLMVN SNYYMMDFLY VTPTPVQAAR bmy_06368T0/1-799 QLKSWWASNY VSDWWEEFVY LRSRNSLMVN SNYYMMDFLY VTPTPVQAAR BACU011068/1-801 QLKSWWASNY VSDWWEEFVY LRSRNSLMVN SNYYMMDFLY VTPTPVQAAR 301 350 ENSP00000376303/1-803 AGNAVHALLL YRHRLNRQEI PPTLLMGMRP LCSAQYEKIF NTTRIPGVQK ENSTTRP00000005228/1-672 AGNAVHALLL YRHRLNRQEI LPTLLMGMRP LCSAQYEKIF NTTRIPGVHK ENSBTAP00000016188/1-801 AGNAVHALLL YRHRLDRQEI LPTLLMGMRP LCSAQYEKIF NTTRIPGVHR bmy_06368T0/1-799 AGNAVHALLL YRHRLNRQEI LPTLLMGMRP LCSAQ----- ---------- BACU011068/1-801 AGNAVHALLL YRHRLNRQEI LPTLLMGMRP LCSAQYEKIF NTTRIPGVHK 351 400 ENSP00000376303/1-803 DYIRHLHDSQ HVAVFHRGRF FRMGTHSRNS LLSPRALEQQ FQRILDDPSP ENSTTRP00000005228/1-672 DHIRHLRDSR HVAVFHRGRF FRVGTHTQSG LLSPRALEQQ FQRILDDPSP ENSBTAP00000016188/1-801 DHIRHLRDSR HVAVFHRGRF FRVGTHSQSR LLSPRALEQQ FQRILDDPSP bmy_06368T0/1-799 ---------- HVAVFHRGRF FRVGTHSQSG LLSPRALEQQ FQRILDDPSP BACU011068/1-801 DHIRHLRDSR HVAVFHRGRF FRVGTHSQSG LLSPRALEQQ FQRILDDPSP 401 450 ENSP00000376303/1-803 ACPHEEHLAA LTAAPRGTWA QVRTSLKTQA AEALEAVEGA AFFVSLDAEP ENSTTRP00000005228/1-672 ACPHEEHLAA LTAAPRDMWA QVRRSLKTQA QEALEAVEGA AFFVSLDSEP ENSBTAP00000016188/1-801 ACPHEQHLAA LTAAPRDTWA QVRRSLKTQA QEALEAVEGA AFFVSLDSEP bmy_06368T0/1-799 ACPHEEHLAA LTAAPRDMWA QVRRSLKTQA QEALEAVEGA AFFVSLDSEP BACU011068/1-801 ACPHEEHLAA LTAAPRDMWA QVRRSLKTQA QEALEAVEGA AFFVSLDSEP 451 500 ENSP00000376303/1-803 AGLTREDPAA SLDAYAHALL AGRGHDRWFD KSFTLIVFSN GKLGLSVEHS ENSTTRP00000005228/1-672 AGLTREDPAA SLDAYAHALL AGRGHDRWFD KSFSLIVFSN GKLGLSVEHS ENSBTAP00000016188/1-801 AGLTREDPAA SLDAYAHALL AGQGHDRWFD KSFSLIVFSN GKLGLSVEHS bmy_06368T0/1-799 AGLTREDPAA SLDAYAHALL AGRGHDRWFD KSFSLIVFSN GKLGLSVEHS BACU011068/1-801 AGLTREDPAA SLDTYAHALL AGRGHDRWFD KSFSLIVFSN GKLGLSVEHS 501 550 ENSP00000376303/1-803 WADCPISGHM WE-------- ---------- ---------F TLATECFQLG ENSTTRP00000005228/1-672 WADCPISGHM WE-------- ---------- ---------F TLATECFQLG ENSBTAP00000016188/1-801 WADCPISGHM WE-------- ---------- ---------F TLATECFQLG bmy_06368T0/1-799 WADCPISGHM WEKGLKRSLV RCPLVQREEG TLTASICTQF TLATECFQLG BACU011068/1-801 WADCPISGHM WE-------- ---------- ---------F TLATECFQLG 551 600 ENSP00000376303/1-803 YSTDGHCKGH PDPTLPQPQR LQWDLPDQIH SSISLALRGA KILSENVDCH ENSTTRP00000005228/1-672 YAADGHCKGH PDLSLPQPQR LHWDLPDKXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000016188/1-801 YSADGHCKVH PDPLLSQTLR LRWDIPKHIH LSISLALRAA KTLSGNIDCH bmy_06368T0/1-799 YSADGHCKGH PDPSLPQPQR LHWDLPDKMH LSISLALRGA KTLSGNIDCH BACU011068/1-801 YSADGHCKGH PDPSLPQPQR LHWDLPDKIH LSISLALRGA KTLSGNIDCH 601 650 ENSP00000376303/1-803 VVPFSLFGKS FIRRCHLSSD SFIQIALQLA HFRDRGQFCL TYESAMTRLF ENSTTRP00000005228/1-672 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXDRGQFC- TYESTMTRLF ENSBTAP00000016188/1-801 VFPFSHFGKN FIKRCHLSSD SFIQTTLQLA HFRDRGQFCL TYESTMTRLF bmy_06368T0/1-799 VFPFSHFGKS FIKRCHLSSD SFIQMALQLA YFRDRGQFCL TYESTMTRLF BACU011068/1-801 VFPFSHFGKS FIKRCHLSSD SFIQMALQLA YFRDRGQFCL TYESTMTRLF 651 700 ENSP00000376303/1-803 LEGRTETVRS CTREACNFVR AMEDKEKTDP QCLALFRVAV DKHQALLKAA ENSTTRP00000005228/1-672 LEGRTETVRS CTREACNFVR AMEDKEKTDP QCLALFRLAV DKHQALLKAA ENSBTAP00000016188/1-801 LEGRTETVRS CTREARDFVR AMEDKEKTDA QCLALFRLAV DKHQALLKAA bmy_06368T0/1-799 LEGRTETVRS CTREACNF-- --------DP QCLALFRLAV DKHQALLKAA BACU011068/1-801 LEGRTETVRS CTREACNFVR AMEDKEKTDP QCLALFRLAV DKHQALLKAA 701 750 ENSP00000376303/1-803 MSGQGVDRHL FALYIVSRFL HLQSPFLTQV HSEQWQLSTS QIPVQQMHLF ENSTTRP00000005228/1-672 MSGQGVDRHL FALYIVSQFL HLQSPFLDQ- ---------- ---------- ENSBTAP00000016188/1-801 MSGQGVDRHL FALYIVSQFL HLQSPFLDQV HSEQWQLATS QIPVQQIHLF bmy_06368T0/1-799 MSGQGVDRHL FALYIVSQFL HLQSPFLDQV RSEQWQLATS QIPVQQIHLF BACU011068/1-801 MSGQGVDRHL FALYIVSQFL HLQSPFLDQV HSEQWQLATS QIPVQQIHLF 751 800 ENSP00000376303/1-803 DVHNYPDYVS SGGGFGPADD HGYGVSYIFM GDGMITFHIS SKKSSTKTDS ENSTTRP00000005228/1-672 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016188/1-801 DVRNYPDYVS SGGGFGPADD HGYGVSYMFM GDDVITFHIS SKKSSTRTDS bmy_06368T0/1-799 DVHSYPDYVS SGGGFGPADD HGYGVSYIFM GDDVITFHIS SKKSSTRTDS BACU011068/1-801 DVHSYPDYVS SGGGFGPADD HGYGVSYIFM GDDVITFHIS SKKSSTRTDS 801 850 ENSP00000376303/1-803 HRLGQHIEDA LLDVASLFQA GQHFKRRFRG SGKENSRHRC GFLSRQTGAS ENSTTRP00000005228/1-672 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016188/1-801 HRLGQRIQDA LLDVAALFPE GQRLKR--RG LGEEDSEHSC GSLPCLTGGS bmy_06368T0/1-799 HRLGQHIEDA LLDVAALFQE GQRLKR--RG LAEEGSEHSR DSLPCHTRGS BACU011068/1-801 HRLGQHIEDA LLDVAALFQE GQRLKR--RG LAEEGSEHSR DSLPCHTRGS 851 900 ENSP00000376303/1-803 KASMTSTDF ENSTTRP00000005228/1-672 --------- ENSBTAP00000016188/1-801 RAPTTATNF bmy_06368T0/1-799 RAPTTATNF BACU011068/1-801 RAPTTATNF