KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:39 2014 Check: 00 .. Name: ENSP00000307887/1-442 Len: 517 Check: 9257 Weight: 1.00 Name: ENSTTRP00000016156/1-450 Len: 517 Check: 2371 Weight: 1.00 Name: ENSBTAP00000016253/1-463 Len: 517 Check: 2315 Weight: 1.00 Name: bmy_10028T0/1-487 Len: 517 Check: 5085 Weight: 1.00 Name: BACU001174/1-315 Len: 517 Check: 5648 Weight: 1.00 // 1 50 ENSP00000307887/1-442 MALPSRILLW KLVLLQSSAV LLHSGSSVPA AAGSSVVSES AVSWEAGARA ENSTTRP00000016156/1-450 -KLPARVXXX XXXXXXXXXX XXXXXPAGPA TPGSSVVSES AVSWAAGARA ENSBTAP00000016253/1-463 MELRAWVLLW RLVLLQSSAV LLSSGPSGPA TSDRSVVSES TVSWAAGARA bmy_10028T0/1-487 MELRARVLLW KLVLLQSSSV LLSSGPAGPA TPGSSVVSES AVSWAAGARA BACU001174/1-315 MELRTRVLLW KLVLLQSSSV LLSSGPAGPA TPGSSVVSES AVSWAAGARA 51 100 ENSP00000307887/1-442 VLRCQSPRMV WTQDRLHDRQ RVLHWDLRG- PGGGPARRLL DLYSA----- ENSTTRP00000016156/1-450 VLRCQSPRMV WTQDRLHDRQ RVVHWDLSGG PAGGSARRLV DMYSA----- ENSBTAP00000016253/1-463 VLRCQSPRMV WTQDRLHDRQ RVVHWDLSGS KAGGPARRLV DMYSTGEQRV bmy_10028T0/1-487 VLRCQSPRMV WTQDRLHDRQ RVVHWDLSGG PAGGPARRLV DMYSA----- BACU001174/1-315 VLRCQSPRMV WTQDRLHDRQ RVVHWDLSGG PAGGPARRLV DMYSA----- 101 150 ENSP00000307887/1-442 ---------- GEQRVYEARD RGRLELSASA FDDGNFSLLI R--------- ENSTTRP00000016156/1-450 ---------- GEQRVYEPRD SGRLLLTPTA FQDGNFSLLI R--------- ENSBTAP00000016253/1-463 GEQRLGEQRV GEQRVYEPRD RGRLLLPPSA FHDGNFSLFI R--------- bmy_10028T0/1-487 ---------- GEQRVYEPRD SGRLLLTPSA FQDGNFSLLI RGTARGTERG BACU001174/1-315 ---------- GEQRVYEPRD SGRLLLTPSA FQDGNFSLLI RGTARGTERG 151 200 ENSP00000307887/1-442 ---------- ---------- AVEETDAGLY TCNLHHHYCH LYESLAVRLE ENSTTRP00000016156/1-450 ---------- ---------- AVEDTDEGLY TCNLHHHYCH LYESLAVRLE ENSBTAP00000016253/1-463 ---------- ---------- AVEETDEGLY TCNLHHHYCH LYESLAVSLE bmy_10028T0/1-487 RGCGGAGEAA ELIAGFPRSV AVEETDEGLY TCNLHHHYCH LYESLAVRLE BACU001174/1-315 RGCGGAGEAA ELIAGFPRSV AVEETDEGLY TCNLHHHYCH LYESLAVRLE 201 250 ENSP00000307887/1-442 VTDGPPATPA YWDGEKEVLA VARGAPALLT CVNRGHVWTD RHVEEAQQVV ENSTTRP00000016156/1-450 VTDDPRAAGA HWDGEKEVLA VERGAPALLT CVNRAHVWTD RHLEEAQQVV ENSBTAP00000016253/1-463 VTDDPRAAGA HWDGEKEVLA VERGAPALLT CVNRAHVWTD RHLEEAQQVV bmy_10028T0/1-487 VTDDPRAAGA HWDGEKEVLA VERGAPALLT CVNRAHVWTD RHLEEAQQVV BACU001174/1-315 VTDD------ ---------- ---------- ---------- ---------- 251 300 ENSP00000307887/1-442 HWDRQPPGVP HDRADRLLDL YASGERRAYG PLFLRDRVAV GADAFERGDF ENSTTRP00000016156/1-450 HWDRQPPGVP HDRADRLLDL YASGERRAYG PPFLRERVAX XXXXXXXXXX ENSBTAP00000016253/1-463 HWDRQPPGVP HDRADRLLDL YASGERRAYG PPFLRDRVAV EADAFARGDF bmy_10028T0/1-487 HWDRQPPGVP HDRADRLLDL YASGERRAYG PPFLRERVAV GADAFARGDF BACU001174/1-315 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000307887/1-442 SLRIEPLEVA DEGTYSCHLH HHYCGLHERR VFHLTVAEPH AE--PPPRGS ENSTTRP00000016156/1-450 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX--XXXXXX ENSBTAP00000016253/1-463 SLLIDPVEPA DEGTYSCHLH HHYCGLHERR VFHLRVTEPA ARPPPPPRDS bmy_10028T0/1-487 SLRIDPLEPA DEGTYSCHLH HHYCGLHERR VFHLKVTEPA AR--PPPRDS BACU001174/1-315 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000307887/1-442 PGNGSSHSGA PGP---DPTL ARGHNVINVI VPESRAHFFQ QLGYVLATLL ENSTTRP00000016156/1-450 XXXXXXXXGA PGP---DPTL TRGRSVINVI VPEGRAHFFQ QLGYVLATLL ENSBTAP00000016253/1-463 PGNGSSHSGA PGPGARDPTL TRGRSVINVI VPEGRAHFFQ QLGYVLATLL bmy_10028T0/1-487 PGNGSSHSGA PGP---DPTL ARGRSVINVI VPEGRAHFFQ QLGYVLATLL BACU001174/1-315 ---------- ------HPTL ARGRSVINVI VPEGRAHFFQ QLGYVLATLL 401 450 ENSP00000307887/1-442 LFILLLVTVL LAAR-RRRGG YEYSDQKSGK SKGKDVNLAE FAVAAGDQML ENSTTRP00000016156/1-450 LFILLLITVI LATRQRRRGG YEYSDKKS-K SKGKDVNMVE FAVAAGDQPL ENSBTAP00000016253/1-463 LFILLLITVV LATRQRRRGG YEYSNKKS-K SKGKDINMAE FAVASGDQSL bmy_10028T0/1-487 LFILLLITVI LATRQRRRGG YEYSDKKS-K SKGKDVNMVE FAVAAGDQAL BACU001174/1-315 LFILLLITVI LATRQRRRGG YEYSDKKS-K SKGKDVNMVE FAAAARDQAL 451 500 ENSP00000307887/1-442 YRSEDIQL-- -----DYKNN ILKERAELAH SPLPAKYIDL DK-------- ENSTTRP00000016156/1-450 YRREDIRLAC SLPASGYKNN LLKEKVGLSH SPLPAKSIDL DK-------- ENSBTAP00000016253/1-463 YRSEDIRL-- -----DYKNN ILKERAEVAH SLPPAKNIDL DK-------- bmy_10028T0/1-487 YRREDIRL-- -----GYKNN LLKERVELSH SPLPAKSIDL DKAEGQRADT BACU001174/1-315 YRREDIRL-- -----GYKNN LLKERVELSH SPLPAKSIDL DK-------- 501 550 ENSP00000307887/1-442 -------GFR KENCK-- ENSTTRP00000016156/1-450 -------G-S PGLCPLG ENSBTAP00000016253/1-463 -------EFR KEYCK-- bmy_10028T0/1-487 RLSPWLPEFR KEYCK-- BACU001174/1-315 -------EFR KEYCK--