KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:40 2014 Check: 00 .. Name: ENSP00000440167/1-217 Len: 273 Check: 1133 Weight: 1.00 Name: ENSBTAP00000016258/1-217 Len: 273 Check: 513 Weight: 1.00 Name: ENSTTRP00000009026/1-236 Len: 273 Check: 8270 Weight: 1.00 Name: bmy_04335T0/1-254 Len: 273 Check: 408 Weight: 1.00 Name: BACU006740/1-217 Len: 273 Check: 2159 Weight: 1.00 // 1 50 ENSP00000440167/1-217 MHFSSSARAA DENFDYLFKI ILIGDSNVGK TCVVQHFKSG VYTETQQNTI ENSBTAP00000016258/1-217 MQFSSSARTV DENFDYLFKI ILIGDSNVGK TCVVQHFKSG VYMEAQQNTI ENSTTRP00000009026/1-236 MQFSSSARAA DENFDYLFKI ILIGDSNVGK TCVVRHFTSG VYTEAQQNTI bmy_04335T0/1-254 MQFSSSARAA DENFDYLFKI ILIGDSNVGK TCVVQHFTSG VYTEAQQNTI BACU006740/1-217 MQFSSSARAA DENFDYLFKI ILIGDSNVGK TCVVQHFTSG VYTEAQQNTI 51 100 ENSP00000440167/1-217 GVDFTVRSLD IDGKKVK--- ---------- ------MQVW DTAGQERFRT ENSBTAP00000016258/1-217 GVDFTVRALE IDGKKVK--- ---------- ------MQVW DTAGQERFRT ENSTTRP00000009026/1-236 GVDFTVRALE INGKKVKSSH QGWELLMRTP FPALLQMQVW DTAGQERFRT bmy_04335T0/1-254 GVDFTVRALE INGKKVK--- ---------- ------MQVW DTAGQERFRT BACU006740/1-217 GVDFTVRALE INGKKVK--- ---------- ------MQVW DTAGQERFRT 101 150 ENSP00000440167/1-217 ITQSYYRSAH AAIIAYDLTR RSTFESIPHW IHEIEKYGAA NVVIMLI--- ENSBTAP00000016258/1-217 ITQSYYRSAH AAIIAYDLTR RSTFESVPHW IHEIEKYGAA NLVIMLI--- ENSTTRP00000009026/1-236 ITQSYYRSAH AAIIAYDLTR RSTFESVPHW IHEIEKYGAA NLVIMLI--- bmy_04335T0/1-254 ITQSYYRSAH AAIIAYDLTR RSTFESVPHW IHEIEKYGAA NLVIMLIGRS BACU006740/1-217 ITQSYYRSAH AAIIAYDLTR RSTFESVPHW IHEIEKYGAA NLVIMLI--- 151 200 ENSP00000440167/1-217 ---------- ---------- ---------- ----GNKCDL WEKRHVLFED ENSBTAP00000016258/1-217 ---------- ---------- ---------- ----GNKCDL WEKRHVLFED ENSTTRP00000009026/1-236 ---------- ---------- ---------- ----GNKCDM WEKRHVLFED bmy_04335T0/1-254 ISKCFTFLDC PPPSMLSFFC IKLLIGIFAS LSLPGNKCDM WEKRHVLFED BACU006740/1-217 ---------- ---------- ---------- ----GNKCDM WEKRHVLFED 201 250 ENSP00000440167/1-217 ACTLAEKYGL LAVLETSAKE SKNIEEVFVL MAKELIARNS LHLYGESALN ENSBTAP00000016258/1-217 ACILAEKYGL LAVLETSAKE SKNIDEVFVL MARELMARHS LPLYGEGAPG ENSTTRP00000009026/1-236 ACTLAEKYGL LAVLETSAKE SKNIDEVFVL MARELMARHS LPLYGEGTLG bmy_04335T0/1-254 ACTLAEKYGL LAVLETSAKE SKNIDEVFVL MARELMARHS LPLYGEGTLG BACU006740/1-217 ACTLAEKYGL LAVLETSAKE SKNIDEVFVL MARELMARHS LPLYGEGTLG 251 300 ENSP00000440167/1-217 GLPLDSSPVL MAQGPSEKTH CTC ENSBTAP00000016258/1-217 SLPLESTPVL MAPAPREKNQ CTC ENSTTRP00000009026/1-236 SLPLDSSPVL TAPGPREKSQ CTC bmy_04335T0/1-254 SLPLESSPVL TAPGPREKSQ CTC BACU006740/1-217 SLPLESSPVL TAPGPREKSQ CTC