KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:46 2014 Check: 00 .. Name: BACU012551/1-264 Len: 335 Check: 4822 Weight: 1.00 Name: ENSP00000421172/1-333 Len: 335 Check: 8300 Weight: 1.00 Name: ENSBTAP00000016283/1-294 Len: 335 Check: 9190 Weight: 1.00 Name: bmy_21258T0/1-264 Len: 335 Check: 798 Weight: 1.00 Name: ENSTTRP00000001167/1-329 Len: 335 Check: 4339 Weight: 1.00 // 1 50 BACU012551/1-264 MPLPSKKDLK TALEVFALFQ WALSALVIVS SVILVNLYLV VFTPYWPVTV ENSP00000421172/1-333 MLLPSKKDLK TALDVFAVFQ WSFSALLITT TVIAVNLYLV VFTPYWPVTV ENSBTAP00000016283/1-294 ---------- ---------- ---------- ---------V VFTPYWPVTV bmy_21258T0/1-264 --MTAKRSP- ---------- --------LS AVILVNLYLS ---------- ENSTTRP00000001167/1-329 MLLPSKKDLK TALEVFALFQ WALSALVIVS TVILVNLYLV VFTPYWPVTV 51 100 BACU012551/1-264 LMLTWLAFDW KTPERARHDS RFLSRSLARR ---DYTPLDS MLLKTYDLAP ENSP00000421172/1-333 LILTWLAFDW KTPQRGGRRF TCVRHWRLWK HYSDYFPLK- -LLKTHDICP ENSBTAP00000016283/1-294 LMLTWLAFDW KTPERGGRRF TCVRKWCLWK QYCDYFPLK- -LLKTHDLSP bmy_21258T0/1-264 ---------- ---------- ---------- --------E- -LLKTHDLSP ENSTTRP00000001167/1-329 L-LTWLAFDW KIPERGGCRF TCVRHWCLWK QYCDYFPLK- -LLKTHDLSP 101 150 BACU012551/1-264 SFNYILPCHP HELMSHSCFG HFATEKSGFS KIFPGMTPYS LTLETFFSGP ENSP00000421172/1-333 SRNYILVCHP HGLFAHGWFG HFATEASGFS KIFPGITPYI LTLGAFFWMP ENSBTAP00000016283/1-294 SLNYIVACHP HGLLSHSWFG HFATEMSGFS KTFPGITPYV LTLGAFFWVP bmy_21258T0/1-264 SLNYILACHP HGLMSHSCFG HFATEKSGFS KIFPGIIPSI LTLGAFFWVP ENSTTRP00000001167/1-329 SLNYILACHP HGLMSHSCFG HFATEKSGFS KIFPGITPYV LTLGAFFWEP 151 200 BACU012551/1-264 FLREYLMSTG PCSVSQSSMD FLFTHRGTNN MLIMVVSGLA ECRYSLPGSI ENSP00000421172/1-333 FLREYVMSTG ACSVSRSSID FLLTHKGTGN MVIVVIGGLA ECRYSLPGSS ENSBTAP00000016283/1-294 FLREYIMSTG ACSVSQSSMD FLLTRRGTGN MLIVVVGGLA ECKYSLPGST bmy_21258T0/1-264 FLREYVMSTG PCSVSQSSMD FLLTRRATGN MLIVGVSGLA ECRYSLPGST ENSTTRP00000001167/1-329 FLREYVMSTG ACSVSQSSMD FLLTRRGTGN MLIVVVSGLA ECRYSLPGSA 201 250 BACU012551/1-264 TLVLKNRTGF VHTALQH--- ---------- ---------- ---------- ENSP00000421172/1-333 TLVLKNRSGF VRMALQHGVP LIPAYAFGET DLYDQHIFTP GGFVNRFQKW ENSBTAP00000016283/1-294 TLFLKGRTGF VRTALQHGVA LIPAYSFGET ELYKQYTFTP GGFINRFQKW bmy_21258T0/1-264 TLVLKNRTGF VRTALRHGVA LIPAYAFGET ELYNQQIFTP GGFVSHFQKW ENSTTRP00000001167/1-329 TLVLKNLTGF VRTALWHGVA LILAYAFGET ELYIKQIFTP GGFVNRFQKW 251 300 BACU012551/1-264 ---------- ---------- ---------- -----GKPLS LPKIENLSKE ENSP00000421172/1-333 FQSMVHIYPC AFYGRGFTKN SWGLLPYSRP VTTIVGEPLP MPKIENPSQE ENSBTAP00000016283/1-294 FQSMVHIYPC AFYGRGFTEN SLGFLPYAQP VTTIVGKPLP LPKIENPSKK bmy_21258T0/1-264 FQSMVHIYPC AFYGHGFIEN SWGLLPYARP VTTIVGKPLP LPKIEDPSKE ENSTTRP00000001167/1-329 FQSMVHIYPC AFYGHGFI-N SWGLLPYARP VTTIVGKPLP LPKIENPSKE 301 350 BACU012551/1-264 IVTKYHVVYI YALHKLFDKH KTKFGFSETQ KLVLT ENSP00000421172/1-333 IVAKYHTLYI DALRKLFDQH KTKFGISETQ ELEII ENSBTAP00000016283/1-294 TVAKYHAIYV DALRQLFDQH KTKFGFSEAQ ELVVT bmy_21258T0/1-264 TVAKYHVVYI DALHKLFGQH KTKFAFSETQ ELVLT ENSTTRP00000001167/1-329 TVVKYHVVYI DALHK--GQH KTKFGFAETQ ELVLT